TCONS_00044968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044968
Unique NameTCONS_00044968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1195

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044968 ID=TCONS_00044968|Name=TCONS_00044968|organism=Clytia hemisphaerica|type=transcript|length=1195bp
ACCTGCAATTGGCAAGCCTGCCATCTAAGctcttttccaaaaaagaaaaa
gtcattaatttgaaagttcttataatctgGGTTCTTCTAAAGAAATGTGT
TTGCATGGTGGGAAACACCCCTTCAACCTGAAATAACTAGAATAAGCCAC
CCCACCTAAAAGAAGCCATAACCCACCTAAAAGAAGCCACCCCCAACCTA
AAAGCAGCCACCTCCACCTAAAAGCAGCCACCCCCACCTATAGGGTAACC
CCGGCATCTAAAATTGGTTACCATCCCAAACTATATTGATCTTAACCCCA
ACCTATATTCATCCAACCCTCATCTCCTTGGTTTATCCTTCTTTGGTTAT
TCTTGCCTAAATTATAAGTACATTTTCTGAGTGCCACTAAATCTAACCCA
CCAACCCTATTGCGCTGGAATGATGCTAAGCGTGGGGAAAATCGATATGC
AGTTAGCCCCTTGCCAAGGCCCCCAAGCCCCCCACAAGCGGTTGGCATGA
TGGGGCTTTTTACAGCGTGATgaggcaaaatttcaaaaaaatacggcgtg
atggcgtgaagtTAAGTGCCAACATGAACACAAAACTGAAGAAAATTGAG
GCGTGATGACgtgaaaaagaaatatatttgCCGTGAATATTGGGTCCGCT
TGGGGGGAGGGCTCCTTACCTCCACCTGAAATTTCTAATAACCCAACCCc
aatctatttttgaaaaatttgaaaatcctcTCAACCCCCCAGAATCAAGG
GGGGGGGTCGGGTGCCAATTTTGATATACgactaaaaaagacaaaactga
taaatttttcgaaaattgtccacccaggacatttttattccaaccccacc
cccctgcttattacagttttgagattttttccaacccccgcttattccaa
accctggctattaggtacccgagagtaagcaAAGCAATATAAATAGTTTC
CATAGGCGATTCCGACCTTTCTACTATTCCTatcacgaccctcgacatgg
cccgagaattctcgggccaaaacttttattggaatgcgCATAAAGCCCGA
GGATGGCCCGAGCATGGCCCGAGTACACGAGGAGTTTGTTAAGTTTATTT
AGCAAGATGAACTGGATGAAACGCgaagaaataaattaaaattaaaattt
tcacacattttcaacttcattttcacgttttcatttcattatgaC
Run BLAST on NCBI

transcript from alignment at sc0006572:359..1677-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044968 ID=TCONS_00044968|Name=TCONS_00044968|organism=Clytia hemisphaerica|type=transcript|length=1319bp|location=Sequence derived from alignment at sc0006572:359..1677- (Clytia hemisphaerica)
ACCTGCAATTGGCAAGCCTGCCATCTAAGCTCTTTTCCAAAAAAGAAAAA
GTCATTAATTTGAAAGTTCTTATAATCTGGGTTCTTCTAAAGAAATGTGT
TTGCATGGTGGGAAACACCCCTTCAACCTGAAATAACTAGAATAAGCCAC
CCCACCTAAAAGAAGCCATAACCCACCTAAAAGAAGGNAAAAGTCATTGA
TTTGAGAAAGTTCTTATAATCTGGGTTCTTCTAAAGAAATGTGTTTGCAT
GGTGGGAAACACCCCTTCAACCTGAAATACCTAGAATAAGCCACACCCAC
CTAAAAGAAGCCACCCCCAACCTAAAAGCAGCCACCTCCACCTAAAAGCA
GCCACCCCCACCTATAGGGTAACCCCGGCATCTAAAATTGGTTACCATCC
CAAACTATATTGATCTTAACCCCAACCTATATTCATCCAACCCTCATCTC
CTTGGTTTATCCTTCTTTGGTTATTCTTGCCTAAATTATAAGTACATTTT
CTGAGTGCCACTAAATCTAACCCACCAACCCTATTGCGCTGGAATGATGC
TAAGCGTGGGGAAAATCGATATGCAGTTAGCCCCTTGCCAAGGCCCCCAA
GCCCCCCACAAGCGGTTGGCATGATGGGGCTTTTTACAGCGTGATGAGGC
AAAATTTCAAAAAAATACGGCGTGATGGCGTGAAGTTAAGTGCCAACATG
AACACAAAACTGAAGAAAATTGAGGCGTGATGACGTGAAAAAGAAATATA
TTTGCCGTGAATATTGGGTCCGCTTGGGGGGAGGGCTCCTTACCTCCACC
TGAAATTTCTAATAACCCAACCCCAATCTATTTTTGAAAAATTTGAAAAT
CCTCTCAACCCCCCAGAATCAAGGGGGGGGGTCGGGTGCCAATTTTGATA
TACGACTAAAAAAGACAAAACTGATAAATTTTTCGAAAATTGTCCACCCA
GGACATTTTTATTCCAACCCCACCCCCCTGCTTATTACAGTTTTGAGATT
TTTTCCAACCCCCGCTTATTCCAAACCCTGGCTATTAGGTACCCGAGAGT
AAGCAAAGCAATATAAATAGTTTCCATAGGCGATTCCGACCTTTCTACTA
TTCCTATCACGACCCTCGACATGGCCCGAGAATTCTCGGGCCAAAACTTT
TATTGGAATGCGCATAAAGCCCGAGGATGGCCCGAGCATGGCCCGAGTAC
ACGAGGAGTTTGTTAAGTTTATTTAGCAAGATGAACTGGATGAAACGCGA
AGAAATAAATTAAAATTAAAATTTTCACACATTTTCAACTTCATTTTCAC
GTTTTCATTTCATTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028559XLOC_028559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044968-exon-sc0006572-1575043694:1492..1677TCONS_00044968-exon-sc0006572-1575043694:1492..1677Clytia hemisphaericaexon
TCONS_00044968-exon-sc0006572-1575043694:359..1367TCONS_00044968-exon-sc0006572-1575043694:359..1367Clytia hemisphaericaexon
TCONS_00044968-exon-sc0006572-1510915933:1492..1677TCONS_00044968-exon-sc0006572-1510915933:1492..1677Clytia hemisphaericaexon
TCONS_00044968-exon-sc0006572-1510915933:359..1367TCONS_00044968-exon-sc0006572-1510915933:359..1367Clytia hemisphaericaexon
TCONS_00044968-exon-sc0006572-1491911889:1492..1677TCONS_00044968-exon-sc0006572-1491911889:1492..1677Clytia hemisphaericaexon
TCONS_00044968-exon-sc0006572-1491911889:359..1367TCONS_00044968-exon-sc0006572-1491911889:359..1367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006572supercontigsc0006572:359..1677 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361743	0.423719	1.50064	1.3862	1.95281	1.78052	2.07126	1.71013	1.23945	1.99891	1.3883	2.53928	1.69239	1.55206	0.666282	0.84514	1.19299	1.41599	0.953743	1.33989	1.00265	1.38135	0.210801	0.517905	3.1011	2.91021	1.3789	0.162173	0.569893	0.800252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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