TCONS_00045070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045070
Unique NameTCONS_00045070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045070 ID=TCONS_00045070|Name=TCONS_00045070|organism=Clytia hemisphaerica|type=transcript|length=1034bp
CTGTTTTAGGTGCACCAGCCTTGACTTCTCGAAATATGAAGAACGAAGAT
TTTGTGAAAGTGATCGATTTTATTGACCGTGCTGTGGAAATTGGGATTGA
AGCTCAGCGTGGAACAAAGTTATTGAAAGATTTCAAGAAGAAGTTAGCGA
ATGATGAGACCATTGTCAATCAATTGAACACCCTGAAAGCTGAGGTTCAA
GAATTTGCTGCAGCATTCCCTATGCCTGGATTAGAGCTTCAGTGATCTGG
ATTTTATGGACCCCACCGAAAGATTTAAACAGTATAGATTCGTATTTTAA
TTTATCTTGCTGATTCGAGGTCTTAGATGATGTTTTACAAGCGATTTTTG
CAAACGGTTTTCTCTCCATGGAAGAGAAAGTTAGTGTAAAACTCCGTCAG
TAAAGTTTTTGCATTAAAATTACTTACCTTTTcgtctaaaaaaaattttc
tctgcaaaATATGGACTGAATGAAATGATTCGTGTAAGATACAAGCATAA
TGGAATAAGTTACTTCATGTTGatgaaaagtttaaaatatgTCCTTCTTT
TTATTAATGTTTTAAAAACCTAGAAAATATTTATGTAAACGACAACAAGT
TTAGTTTAATTGTACagtttagaatttcttttgcactttttttacaatat
ttaaTAGTTATTTTGTGACTTTGTTGAACATTTTTTATTACCCACTTTAA
ATTTTAGTTTGTAAGTTTGGTCATATTTTTATATCGACATGTGCTAATTT
TCTTTCGTTACGACAGAGACCAATGATTCTCGTTAAACGATTAGTTCTTC
ATCGATCCACAGTCGAGATGCTTAAAAATATAACTTTCTCAAAATGTTCT
AGAGAATCATTCGTTTAAGTTTCGCAGTTTTGGtcgtaagttttttttaa
agtatgcatttttttgtttaggtATGTTAAAACACGTTTGGATTTTTATG
agatatttataatttttaaaatttagggTTGTGAGTGTattgaaaatagt
attttttaaattgaaatctcAATCAACTCGTTTT
Run BLAST on NCBI

transcript from alignment at sc0006827:3..1411-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045070 ID=TCONS_00045070|Name=TCONS_00045070|organism=Clytia hemisphaerica|type=transcript|length=1409bp|location=Sequence derived from alignment at sc0006827:3..1411- (Clytia hemisphaerica)
CTGTTTTAGGTGCACCAGCCTTGACTTCTCGAAATATGAAGAACGAAGAT
TTTGTGAAAGTGATCGATTTTATTGACCGTGCTGTGGAAATTGGGATTGA
AGCTCAGCGTGGAACAAGTAAGATTTTCCATGGATCATTTAATAACAATC
TGAAGAACCCCGAATAATAGATTAGATCTTAAATCCCCTTTGGATTTTTG
ATGGAAAATACCCAGACATTGTTGGTTTATCTAATATTTTGTTACCTTAC
CTTACCTGGTCGGCCATAGCCGGCTAACCTAATATTTTGTTAGGATATTT
TATTCAATTGAGTTTCGAAAAATAATATGGAACCTCTTCGCTGCATTGAG
ACCAAAACATTTTTAGGAACAAGAACAATACTACGTGTAAGTACCTAAGG
GAAGCTTGATGCCATTTTTAACTATCCCAGACTATCCAGTGACTTTGTAC
AAGTTTTGCAAGTGGTACAATATATTCTCTCTCTATTTCCAGAGTTATTG
AAAGATTTCAAGAAGAAGTTAGCGAATGATGAGACCATTGTCAATCAATT
GAACACCCTGAAAGCTGAGGTTCAAGAATTTGCTGCAGCATTCCCTATGC
CTGGATTAGAGCTTCAGTGATCTGGATTTTATGGACCCCACCGAAAGATT
TAAACAGTATAGATTCGTATTTTAATTTATCTTGCTGATTCGAGGTCTTA
GATGATGTTTTACAAGCGATTTTTGCAAACGGTTTTCTCTCCATGGAAGA
GAAAGTTAGTGTAAAACTCCGTCAGTAAAGTTTTTGCATTAAAATTACTT
ACCTTTTCGTCTAAAAAAAATTTTCTCTGCAAAATATGGACTGAATGAAA
TGATTCGTGTAAGATACAAGCATAATGGAATAAGTTACTTCATGTTGATG
AAAAGTTTAAAATATGTCCTTCTTTTTATTAATGTTTTAAAAACCTAGAA
AATATTTATGTAAACGACAACAAGTTTAGTTTAATTGTACAGTTTAGAAT
TTCTTTTGCACTTTTTTTACAATATTTAATAGTTATTTTGTGACTTTGTT
GAACATTTTTTATTACCCACTTTAAATTTTAGTTTGTAAGTTTGGTCATA
TTTTTATATCGACATGTGCTAATTTTCTTTCGTTACGACAGAGACCAATG
ATTCTCGTTAAACGATTAGTTCTTCATCGATCCACAGTCGAGATGCTTAA
AAATATAACTTTCTCAAAATGTTCTAGAGAATCATTCGTTTAAGTTTCGC
AGTTTTGGTCGTAAGTTTTTTTTAAAGTATGCATTTTTTTGTTTAGGTAT
GTTAAAACACGTTTGGATTTTTATGAGATATTTATAATTTTTAAAATTTA
GGGTTGTGAGTGTATTGAAAATAGTATTTTTTAAATTGAAATCTCAATCA
ACTCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028654XLOC_028654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045070-exon-sc0006827-1575043694:1295..1411TCONS_00045070-exon-sc0006827-1575043694:1295..1411Clytia hemisphaericaexon
TCONS_00045070-exon-sc0006827-1575043694:3..919TCONS_00045070-exon-sc0006827-1575043694:3..919Clytia hemisphaericaexon
TCONS_00045070-exon-sc0006827-1510915933:1295..1411TCONS_00045070-exon-sc0006827-1510915933:1295..1411Clytia hemisphaericaexon
TCONS_00045070-exon-sc0006827-1510915933:3..919TCONS_00045070-exon-sc0006827-1510915933:3..919Clytia hemisphaericaexon
TCONS_00045070-exon-sc0006827-1491911889:1295..1411TCONS_00045070-exon-sc0006827-1491911889:1295..1411Clytia hemisphaericaexon
TCONS_00045070-exon-sc0006827-1491911889:3..919TCONS_00045070-exon-sc0006827-1491911889:3..919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006827supercontigsc0006827:3..1411 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.93446	5.99671	54.1926	62.0222	14.1501	10.8608	14.1536	13.9751	16.9232	17.1018	9.67212	9.13615	6.12043	7.48479	5.71398	5.52926	39.7397	40.9966	5.94275	6.50568	23.9074	23.1804	11.5871	12.2378	18.1451	15.8644	60.4402	46.0649	3.53204	3.89037
Blast
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BLAST of TCONS_00045070 vs. Swiss-Prot (Human)
Match: GLYM (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.042e-17
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 3 
Query:    6 LGAPALTSRNMKNEDFVKVIDFIDRAVEIGIEAQRGTKLLKDFKKKLANDETIVNQLNTLKAEVQEFAAAFPMPGLE 236
            LGAPALTSR  + +DF +V+DFID  V IG+E +  T  L+DFK  L  D     +L  L+  V++FA AFPMPG +
Sbjct:  426 LGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFD 502
The following BLAST results are available for this feature:
BLAST of TCONS_00045070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLYM6.042e-1749.35Serine hydroxymethyltransferase, mitochondrial OS=... [more]
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