TCONS_00045171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045171
Unique NameTCONS_00045171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045171 ID=TCONS_00045171|Name=TCONS_00045171|organism=Clytia hemisphaerica|type=transcript|length=859bp
GATCGAGGCTATGGCGGTGACCGTGATCGAGGCTATGGCGGTGACCGTGA
TCGAGGCTATGGTGGAGACCGTGATCGTGGATATGGCGGTGACCGCGATC
GAGGATATGGAGATCGTGATCGAGGAACTCCCGACCGAAGGGGAGGAGGA
GGCTACGACAGGCGAGATGATCGAAGAGACGATTCTCGCGGTGGAAGTTA
CAACCGTCCTCAAAGTGGATGGCGTGATGGCGGTGGTGATAGCTGGCGTT
CAGGTGGAGGTGCTCGTTCCGAAgGTCGTTCGTATCAAGCATCACGCGTT
CGATCGGACCGCGATCGTGGGGAAGAGCGGTCTCGTGATGAGCGTGGTGG
AGGTGATGAAGGATGGACCACCGTAGGGAAATAAATCCAATCAGAAATCA
GAATGTAACCTCTTACCAGatcgaaatacaatttttcttATGAATTATTT
TACATGATACGTGTCCCTTTTATTGACTAAGATGAATTAATAACAGCTCA
CTTAGCTAATGATTGACTAATTCAGAAAACCGTGTGTGCGTTTCAACGAG
AAGAGGtatgtcttttctttctttttctcattCTTATCGCGTAAGGAAGG
ATGAAGTGATTCCCACAACAGGGATCTTCGTTAATAATTTCTTCCCGGCG
ATGGAGGGGAggatatgtatttttttattgcaccACCTATATCATTGGCC
AGTCATCAAACAAACCCCCTCCTCCTCGAAATGAAAATTTACCCATGACT
TTGTCGCTaagggccgtccacatagtacgttcgcactaaaatgtcaaaaa
tcgaGCACCCCCTCCCACCGTGTATGCAAGCGTACGCAATTGCCAATACC
CCCTGTTta
Run BLAST on NCBI

protein sequence of TCONS_00045171-protein

>TCONS_00045171-protein ID=TCONS_00045171-protein|Name=TCONS_00045171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
DRGYGGDRDRGYGGDRDRGYGGDRDRGYGGDRDRGYGDRDRGTPDRRGGG
GYDRRDDRRDDSRGGSYNRPQSGWRDGGGDSWRSGGGARSEGRSYQASRV
RSDRDRGEERSRDERGGGDEGWTTVGK
Run BLAST on NCBI

transcript from alignment at sc0007130:32..1143-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045171 ID=TCONS_00045171|Name=TCONS_00045171|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0007130:32..1143- (Clytia hemisphaerica)
GATCGAGGCTATGGCGGTGACCGTGATCGAGGCTATGGCGGTGACCGTGA
TCGAGGCTATGGTGGAGACCGTGATCGTGGATATGGCGGTGACCGCGATC
GAGGATATGGAGATCGTGATCGAGGAACTCCCGACCGAAGGGGAGGAGGA
GGCTACGACAGGCGAGATGATCGAAGAGACGATTCTCGCGGTGGAAGTTA
CAACCGTCCTCAAAGTGGATGGCGTGATGGCGGTGGTGATAGCTGGCGTT
CAGGTGGAGGTGCTCGTTCCGAAGGTAATTTTAAATTATTTTTTCTTTTA
TCAACCTTTTCGAAGCTTGGTGAATTTTGGAGGCTGAAGATACGGAGGAA
TCTGTTAAAAGTGAGAAAGCCGCGAATATCATAACCACCTCAACATTATT
TTTGAAACTCAAATGAATCTTTTTGACAAAAAGTCTCTATTTCTTAGCCT
CAAATTGTGCTCCCTTATGTTAGATATTCCATTCATGTGTTCTTCATGTT
TCTTTCCCTAATATTTTATTTCTTCAGGTCGTTCGTATCAAGCATCACGC
GTTCGATCGGACCGCGATCGTGGGGAAGAGCGGTCTCGTGATGAGCGTGG
TGGAGGTGATGAAGGATGGACCACCGTAGGGAAATAAATCCAATCAGAAA
TCAGAATGTAACCTCTTACCAGATCGAAATACAATTTTTCTTATGAATTA
TTTTACATGATACGTGTCCCTTTTATTGACTAAGATGAATTAATAACAGC
TCACTTAGCTAATGATTGACTAATTCAGAAAACCGTGTGTGCGTTTCAAC
GAGAAGAGGTATGTCTTTTCTTTCTTTTTCTCATTCTTATCGCGTAAGGA
AGGATGAAGTGATTCCCACAACAGGGATCTTCGTTAATAATTTCTTCCCG
GCGATGGAGGGGAGGATATGTATTTTTTTATTGCACCACCTATATCATTG
GCCAGTCATCAAACAAACCCCCTCCTCCTCGAAATGAAAATTTACCCATG
ACTTTGTCGCTAAGGGCCGTCCACATAGTACGTTCGCACTAAAATGTCAA
AAATCGAGCACCCCCTCCCACCGTGTATGCAAGCGTACGCAATTGCCAAT
ACCCCCTGTTTA

Coding sequence (CDS) from alignment at sc0007130:32..1143-

>TCONS_00045171 ID=TCONS_00045171|Name=TCONS_00045171|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0007130:32..1143- (Clytia hemisphaerica)
GTCGTTCGTATCAAGCATCACGCGTTCGATCGGACCGCGATCGTGGGGAA
GAGCGGTCTCGTGATGAGCGTGGTGGAGGTGATGAAGGATGGACCACCGT
AGGGAAATAAGATCGAGGCTATGGCGGTGACCGTGATCGAGGCTATGGCG
GTGACCGTGATCGAGGCTATGGTGGAGACCGTGATCGTGGATATGGCGGT
GACCGCGATCGAGGATATGGAGATCGTGATCGAGGAACTCCCGACCGAAG
GGGAGGAGGAGGCTACGACAGGCGAGATGATCGAAGAGACGATTCTCGCG
GTGGAAGTTACAACCGTCCTCAAAGTGGATGGCGTGATGGCGGTGGTGAT
AGCTGGCGTTCAGGTGGAGGTGCTCGTTCCGAAGGTCGTTCGTATCAAGC
ATCACGCGTTCGATCGGACCGCGATCGTGGGGAAGAGCGGTCTCGTGATG
AGCGTGGTGGAGGTGATGAAGGATGGACCACCGTAGGGAAATAAGATCGA
GGCTATGGCGGTGACCGTGATCGAGGCTATGGCGGTGACCGTGATCGAGG
CTATGGTGGAGACCGTGATCGTGGATATGGCGGTGACCGCGATCGAGGAT
ATGGAGATCGTGATCGAGGAACTCCCGACCGAAGGGGAGGAGGAGGCTAC
GACAGGCGAGATGATCGAAGAGACGATTCTCGCGGTGGAAGTTACAACCG
TCCTCAAAGTGGATGGCGTGATGGCGGTGGTGATAGCTGGCGTTCAGGTG
GAGGTGCTCGTTCCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028754XLOC_028754Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045171-proteinTCONS_00045171-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045171-exon-sc0007130-1575043694:870..1143TCONS_00045171-exon-sc0007130-1575043694:870..1143Clytia hemisphaericaexon
TCONS_00045171-exon-sc0007130-1575043694:32..616TCONS_00045171-exon-sc0007130-1575043694:32..616Clytia hemisphaericaexon
TCONS_00045171-exon-sc0007130-1510915933:870..1143TCONS_00045171-exon-sc0007130-1510915933:870..1143Clytia hemisphaericaexon
TCONS_00045171-exon-sc0007130-1510915933:32..616TCONS_00045171-exon-sc0007130-1510915933:32..616Clytia hemisphaericaexon
TCONS_00045171-exon-sc0007130-1491911889:870..1143TCONS_00045171-exon-sc0007130-1491911889:870..1143Clytia hemisphaericaexon
TCONS_00045171-exon-sc0007130-1491911889:32..616TCONS_00045171-exon-sc0007130-1491911889:32..616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007130supercontigsc0007130:32..1143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.784	120.076	93.7499	97.7658	115.56	88.177	112.627	122.981	125.105	130.458	152.844	137.079	210.033	249.562	136.71	152.032	121.16	113.602	71.4238	80.0828	135.308	132.743	160.021	147.303	127.634	138.962	111.664	166.855	114.013	123.506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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