TCONS_00045177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045177
Unique NameTCONS_00045177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045177 ID=TCONS_00045177|Name=TCONS_00045177|organism=Clytia hemisphaerica|type=transcript|length=737bp
GAAACTTTGACCTTCAGTCAAAAGCAGTTTTACTTGCGTAAAGATGGTTT
TTTCCAACGAAGATAAAGCTGTCATAAAGAATGATTATACCGAAAAAGGC
TGGTCAGCGTACAGGATTTGTAAAGAGCATCCCATGAAGAAGTGGTATAA
AAGTTCTGTGCAAAATCTCATTAATCGATTCAAAAAAAGTGGGACCATGG
ACAGAAAACCCGGCTCCGGCCGCCCAATAACTGTAACCACTGCAGAAAAC
GAAGAAATTGTTGAGCAACTGATTTGCTCGCAGGAAGAATCACCTGGAGA
GATTGAAAAGATAACGGGAATAAAGAGATCATCAGTGCGAAGAACGGTGA
AACGAAATGGATGGAAGCAGTATAAAAGAATCAAGACCCCGAGAGTTACC
GAAGGAACAAAGAAACGACGAACGGAAAGATCTGGTGCTTTGGCAGAACG
GTTTTCCCACAAAAGAAGCGTAGAGAAGTGTGTGTTCCAAGACGAGAAAG
ACTTTACTCTTGATGTACTCATTAATTCACAAAATAGCAGAGTATATAGC
CAAGGAAAAAAGGCTGATGTCCCTGATAAACGTTTGTATCATGAAAAAAA
CCGACAGTCAAAAAAAGTGATGGTGTCTGCCTGTGTCACGTGGCACGGGG
ccacaaaacctttttttgttACGAACAATAATGTTAAAGTAAATGCCAAG
AGATATAAAACGCATCTTCAAAAGTATCTTCTTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00045177-protein

>TCONS_00045177-protein ID=TCONS_00045177-protein|Name=TCONS_00045177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MVFSNEDKAVIKNDYTEKGWSAYRICKEHPMKKWYKSSVQNLINRFKKSG
TMDRKPGSGRPITVTTAENEEIVEQLICSQEESPGEIEKITGIKRSSVRR
TVKRNGWKQYKRIKTPRVTEGTKKRRTERSGALAERFSHKRSVEKCVFQD
EKDFTLDVLINSQNSRVYSQGKKADVPDKRLYHEKNRQSKKVMVSACVTW
HGATKPFFVTNNNVKVNAKRYKTHLQKYLLP
Run BLAST on NCBI

transcript from alignment at sc0007139:170..906

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045177 ID=TCONS_00045177|Name=TCONS_00045177|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0007139:170..906 (Clytia hemisphaerica)
CTGGAAGAAGATACTTTTGAAGATGCGTTTTATATCTCTTGGCATTTACT
TTAACATTATTGTTCGTaacaaaaaaaggttttgtggCCCCGTGCCACGT
GACACAGGCAGACACCATCACTTTTTTTGACTGTCGGTTTTTTTCATGAT
ACAAACGTTTATCAGGGACATCAGCCTTTTTTCCTTGGCTATATACTCTG
CTATTTTGTGAATTAATGAGTACATCAAGAGTAAAGTCTTTCTCGTCTTG
GAACACACACTTCTCTACGCTTCTTTTGTGGGAAAACCGTTCTGCCAAAG
CACCAGATCTTTCCGTTCGTCGTTTCTTTGTTCCTTCGGTAACTCTCGGG
GTCTTGATTCTTTTATACTGCTTCCATCCATTTCGTTTCACCGTTCTTCG
CACTGATGATCTCTTTATTCCCGTTATCTTTTCAATCTCTCCAGGTGATT
CTTCCTGCGAGCAAATCAGTTGCTCAACAATTTCTTCGTTTTCTGCAGTG
GTTACAGTTATTGGGCGGCCGGAGCCGGGTTTTCTGTCCATGGTCCCACT
TTTTTTGAATCGATTAATGAGATTTTGCACAGAACTTTTATACCACTTCT
TCATGGGATGCTCTTTACAAATCCTGTACGCTGACCAGCCTTTTTCGGTA
TAATCATTCTTTATGACAGCTTTATCTTCGTTGGAAAAAACCATCTTTAC
GCAAGTAAAACTGCTTTTGACTGAAGGTCAAAGTTTC

Coding sequence (CDS) from alignment at sc0007139:170..906

>TCONS_00045177 ID=TCONS_00045177|Name=TCONS_00045177|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0007139:170..906 (Clytia hemisphaerica)
TGGAAGAAGATACTTTTGAAGATGCGTTTTATATCTCTTGGCATTTACTT
TAACATTATTGTTCGTaacaaaaaaaggttttgtggCCCCGTGCCACGTG
ACACAGGCAGACACCATCACTTTTTTTGACTGTCGGTTTTTTTCATGATA
CAAACGTTTATCAGGGACATCAGCCTTTTTTCCTTGGCTATATACTCTGC
TATTTTGTGAATTAATGAGTACATCAAGAGTAAAGTCTTTCTCGTCTTGG
AACACACACTTCTCTACGCTTCTTTTGTGGGAAAACCGTTCTGCCAAAGC
ACCAGATCTTTCCGTTCGTCGTTTCTTTGTTCCTTCGGTAACTCTCGGGG
TCTTGATTCTTTTATACTGCTTCCATCCATTTCGTTTCACCGTTCTTCGC
ACTGATGATCTCTTTATTCCCGTTATCTTTTCAATCTCTCCAGGTGATTC
TTCCTGCGAGCAAATCAGTTGCTCAACAATTTCTTCGTTTTCTGCAGTGG
TTACAGTTATTGGGCGGCCGGAGCCGGGTTTTCTGTCCATGGTCCCACTT
TTTTTGAATCGATTAATGAGATTTTGCACAGAACTTTTATACCACTTCTT
CATGGGATGCTCTTTACAAATCCTGTACGCTGACCAGCCTTTTTCGGTAT
AATCATTCTTTATGACAGCTTTATCTTCGTTGGAAAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028760XLOC_028760Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045177-proteinTCONS_00045177-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045177-exon-sc0007139-1491911889:170..906TCONS_00045177-exon-sc0007139-1491911889:170..906Clytia hemisphaericaexon
TCONS_00045177-exon-sc0007139-1510915933:170..906TCONS_00045177-exon-sc0007139-1510915933:170..906Clytia hemisphaericaexon
TCONS_00045177-exon-sc0007139-1575043694:170..906TCONS_00045177-exon-sc0007139-1575043694:170..906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007139supercontigsc0007139:170..906 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.094	1.09119	1.53014	0.996953	0.279771	0.355084	0.172774	0.657442	0.333425	0.357433	0.147399	0.0516239	0.343011	0.149245	0.226574	0.172823	0	0	0.0854866	0.149487	0	0	0.461738	0.0777922	3.62086	3.19341	0.0949794	0.0983284	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top