TCONS_00045198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045198
Unique NameTCONS_00045198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045198 ID=TCONS_00045198|Name=TCONS_00045198|organism=Clytia hemisphaerica|type=transcript|length=978bp
CTTTCAGGTATTGCACCAGCTCTGCTAATTATGAAAATCCCACAGAAATC
TCCTTCTAAAACTGTCTAAAGAAGAACAAAATGAGGTTTTTCCATGTAAA
AATATTTCCAGCTATGGAAAGCCATTTTAATCGACCGTTATACAGACTAT
TATACAAGCTCACTTCGCTGACCAATTTACATGCAGCTTGAAAAGTCCAT
ATTATACCAATATCCAACAGCATAGTTATGGTATAACATGAGTGCACTAC
AAGGCCCTGTAAAACACAGCTCTAAAGTCATTTTCGCAACATATTATGTT
AATCACAAGAACGAGATATGTTTGGGGATGTGGTGACCCTGTTAATACCG
GGATTGCTACGGACAGGCAGATATTTGTAATACTCTCCAGTATAGAATAT
GATTGAATAATATGAGTGTATCTTTCCTCCACAATATGCACCAATACCAT
ATAAATATAGTCCTTTCAATACAcatttaacaagaaaacaacaaGCCCAC
AATTCAATCTACTATACCAATGCCAATCAGTTGATATTTGGTCTGAAGTG
TTTACAGCTTCCTATTTCAATCCATGATGCAGTCAATTTCGGTTGAGTAT
GTGTGAaatttgaacatatttttgtgaGGTATTTTTCCATTTATGAAAGC
ATGTCttcaaatttctctttttttcccaaAGGGTTatcgaaaaaagtaaa
aagtttttaaaaacatgcTTTTTCATGGTATTTAAGTGTAATGTGAGAAT
CATGATTTGTAATTAGCCGTTAACCAGGTTAATCCTTCATAAAGTCCATC
CCCGGTTGTAGCACATGAGGGCTGTACAAACCAATTCCTATCTCTGATTC
GTGTTAATcctaatttttcttgaatttcgtGAGGTTTCATAGctataaaa
gaagaaagataagaaCTTTGCGTTGGATGGTTATCTCATTTTAAGTCTCT
TTAGGGGCACTGTGATTACTTTTCAATG
Run BLAST on NCBI

transcript from alignment at sc0007178:129..1106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045198 ID=TCONS_00045198|Name=TCONS_00045198|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at sc0007178:129..1106 (Clytia hemisphaerica)
CATTGAAAAGTAATCACAGTGCCCCTAAAGAGACTTAAAATGAGATAACC
ATCCAACGCAAAGttcttatctttcttcttttatagCTATGAAACCTCac
gaaattcaagaaaaattaggATTAACACGAATCAGAGATAGGAATTGGTT
TGTACAGCCCTCATGTGCTACAACCGGGGATGGACTTTATGAAGGATTAA
CCTGGTTAACGGCTAATTACAAATCATGATTCTCACATTACACTTAAATA
CCATGAAAAAgcatgtttttaaaaactttttacttttttcgatAACCCTt
tgggaaaaaaagagaaatttgaaGACATGCTTTCATAAATGGAAAAATAC
CtcacaaaaatatgttcaaattTCACACATACTCAACCGAAATTGACTGC
ATCATGGATTGAAATAGGAAGCTGTAAACACTTCAGACCAAATATCAACT
GATTGGCATTGGTATAGTAGATTGAATTGTGGGCttgttgttttcttgtt
aaatgTGTATTGAAAGGACTATATTTATATGGTATTGGTGCATATTGTGG
AGGAAAGATACACTCATATTATTCAATCATATTCTATACTGGAGAGTATT
ACAAATATCTGCCTGTCCGTAGCAATCCCGGTATTAACAGGGTCACCACA
TCCCCAAACATATCTCGTTCTTGTGATTAACATAATATGTTGCGAAAATG
ACTTTAGAGCTGTGTTTTACAGGGCCTTGTAGTGCACTCATGTTATACCA
TAACTATGCTGTTGGATATTGGTATAATATGGACTTTTCAAGCTGCATGT
AAATTGGTCAGCGAAGTGAGCTTGTATAATAGTCTGTATAACGGTCGATT
AAAATGGCTTTCCATAGCTGGAAATATTTTTACATGGAAAAACCTCATTT
TGTTCTTCTTTAGACAGTTTTAGAAGGAGATTTCTGTGGGATTTTCATAA
TTAGCAGAGCTGGTGCAATACCTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028781XLOC_028781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045198-exon-sc0007178-1491911889:129..1106TCONS_00045198-exon-sc0007178-1491911889:129..1106Clytia hemisphaericaexon
TCONS_00045198-exon-sc0007178-1510915933:129..1106TCONS_00045198-exon-sc0007178-1510915933:129..1106Clytia hemisphaericaexon
TCONS_00045198-exon-sc0007178-1575043694:129..1106TCONS_00045198-exon-sc0007178-1575043694:129..1106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007178supercontigsc0007178:129..1106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.7497	66.4133	69.602	73.9718	257.229	171.858	183.168	194.732	117.725	118.488	81.9734	64.7813	63.5604	50.0074	60.2988	56.4074	88.6299	88.3003	43.7281	69.8701	87.5605	84.8411	85.5132	91.102	47.0472	66.8475	113.877	89.6103	93.1813	94.1883
Blast
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BLAST of TCONS_00045198 vs. Swiss-Prot (Human)
Match: ARF6 (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.663e-25
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = -2 
Query:  753 AMKPHEIQEKLGLTRIRDRNWFVQPSCATTGDGLYEGLTWLTANYKS 893
            AMKPHEIQEKLGLTRIRDRNW+VQPSCAT+GDGLYEGLTWLT+NYKS
Sbjct:  129 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
The following BLAST results are available for this feature:
BLAST of TCONS_00045198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF64.663e-2593.62ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
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