TCONS_00045200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045200
Unique NameTCONS_00045200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045200 ID=TCONS_00045200|Name=TCONS_00045200|organism=Clytia hemisphaerica|type=transcript|length=1027bp
tTGACTAgaagaaatattgaaaagaaatttctttataaaatatatctttt
ttgctattttacttatacataaaaatatataatgtcCCTGAAAAATATAA
CCTCTACTAAAAATTGGTTACAAACCACTATAGAAAAACAACTAAAAATG
caaattatcaaaaaagttaATATCACTAGTAAAAATATGAAAGTAAtcgt
ttaaaaatatatttcaaaccaTAACCAATATAACTGAATATACAAAACTA
CAATAACAAAACTGTAACAATAACAAAAGTCTTTTTAACATGTTCCGTAG
TAGCGATCCCCATAATCGCCAAGACCAGGAACGATAAATTTATTTTCgtt
caatttttcatcaacACAGCAAGTGACAACTTTAATTTTAGGGTATGCTT
CATACATACTCTGAAGGCCTTCAGGACAGCAAATAAGATTAATAAACATG
ATTTTCTCCTCAGGAACTCCGGCTTCTAAAAGGACTTTGATTGCTCTTTT
GGCACTTCCCCCAGTTGCTAACATGGGGTCAACAAGGATACAAAAACATT
GAGAGatattttttggcaattttttgtaaaataaaacaGGAGCCTTATCA
CTCCTGCTTTCATCTCTCTGAATTAAGATTTTACCAATTCCAACTCCAGG
ACAAATTTGACGAACAGCTTCTTGAAGAATGTCTCCAGAGCGTGGAATGG
AAACAACACAAAGGTTTTGACCTTCAATCTCAACAAGACCCTCAGCTGGC
CCACAAGGTGTTTCTACCTTTCCCATTTCTACATTTGGAAGTCTTGCAAG
AGCTTCTTCAGCCAAGATACGCATCAATCGGTCAccgtaaaaattgaatt
tcttacATCTGGTATCTTTATTTCTCAGTTTCATTAAAAGAAATTCAACT
GCTCTTGATTGAAGAATTTCGACATTTCCTCTGTAACCAttcattttgat
aaattttcctGATTATCTAAATAAAAATGACAGTTAGAAGAAAAATACTT
TTACAATCTTAATCAAGCAAATAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00045200-protein

>TCONS_00045200-protein ID=TCONS_00045200-protein|Name=TCONS_00045200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MNGYRGNVEILQSRAVEFLLMKLRNKDTRCKKFNFYGDRLMRILAEEALA
RLPNVEMGKVETPCGPAEGLVEIEGQNLCVVSIPRSGDILQEAVRQICPG
VGIGKILIQRDESRSDKAPVLFYKKLPKNISQCFCILVDPMLATGGSAKR
AIKVLLEAGVPEEKIMFINLICCPEGLQSMYEAYPKIKVVTCCVDEKLNE
NKFIVPGLGDYGDRYYGTC
Run BLAST on NCBI

transcript from alignment at sc0007181:5..1031

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045200 ID=TCONS_00045200|Name=TCONS_00045200|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at sc0007181:5..1031 (Clytia hemisphaerica)
TTTCTATTTGCTTGATTAAGATTGTAAAAGTATTTTTCTTCTAACTGTCA
TTTTTATTTAGATAATCaggaaaatttatcaaaatgaaTGGTTACAGAGG
AAATGTCGAAATTCTTCAATCAAGAGCAGTTGAATTTCTTTTAATGAAAC
TGAGAAATAAAGATACCAGATgtaagaaattcaatttttacggTGACCGA
TTGATGCGTATCTTGGCTGAAGAAGCTCTTGCAAGACTTCCAAATGTAGA
AATGGGAAAGGTAGAAACACCTTGTGGGCCAGCTGAGGGTCTTGTTGAGA
TTGAAGGTCAAAACCTTTGTGTTGTTTCCATTCCACGCTCTGGAGACATT
CTTCAAGAAGCTGTTCGTCAAATTTGTCCTGGAGTTGGAATTGGTAAAAT
CTTAATTCAGAGAGATGAAAGCAGGAGTGATAAGGCTCCtgttttatttt
acaaaaaattgccaaaaaatatCTCTCAATGTTTTTGTATCCTTGTTGAC
CCCATGTTAGCAACTGGGGGAAGTGCCAAAAGAGCAATCAAAGTCCTTTT
AGAAGCCGGAGTTCCTGAGGAGAAAATCATGTTTATTAATCTTATTTGCT
GTCCTGAAGGCCTTCAGAGTATGTATGAAGCATACCCTAAAATTAAAGTT
GTCACTTGCTGTgttgatgaaaaattgaacGAAAATAAATTTATCGTTCC
TGGTCTTGGCGATTATGGGGATCGCTACTACGGAACATGTTAAAAAGACT
TTTGTTATTGTTACAGTTTTGTTATTGTAGTTTTGTATATTCAGTTATAT
TGGTTAtggtttgaaatatatttttaaacgaTTACTTTCATATTTTTACT
AGTGATATtaacttttttgataatttgCATTTTTAGTTGTTTTTCTATAG
TGGTTTGTAACCAATTTTTAGTAGAGGTTATATTTTTCAGGgacattata
tatttttatgtataagtaaaatagcaaaaaagatatattttataaagaaa
tttcttttcaatatttcttcTAGTCAa

Coding sequence (CDS) from alignment at sc0007181:5..1031

>TCONS_00045200 ID=TCONS_00045200|Name=TCONS_00045200|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0007181:5..1031 (Clytia hemisphaerica)
atgaaTGGTTACAGAGGAAATGTCGAAATTCTTCAATCAAGAGCAGTTGA
ATTTCTTTTAATGAAACTGAGAAATAAAGATACCAGATgtaagaaattca
atttttacggTGACCGATTGATGCGTATCTTGGCTGAAGAAGCTCTTGCA
AGACTTCCAAATGTAGAAATGGGAAAGGTAGAAACACCTTGTGGGCCAGC
TGAGGGTCTTGTTGAGATTGAAGGTCAAAACCTTTGTGTTGTTTCCATTC
CACGCTCTGGAGACATTCTTCAAGAAGCTGTTCGTCAAATTTGTCCTGGA
GTTGGAATTGGTAAAATCTTAATTCAGAGAGATGAAAGCAGGAGTGATAA
GGCTCCtgttttattttacaaaaaattgccaaaaaatatCTCTCAATGTT
TTTGTATCCTTGTTGACCCCATGTTAGCAACTGGGGGAAGTGCCAAAAGA
GCAATCAAAGTCCTTTTAGAAGCCGGAGTTCCTGAGGAGAAAATCATGTT
TATTAATCTTATTTGCTGTCCTGAAGGCCTTCAGAGTATGTATGAAGCAT
ACCCTAAAATTAAAGTTGTCACTTGCTGTgttgatgaaaaattgaacGAA
AATAAATTTATCGTTCCTGGTCTTGGCGATTATGGGGATCGCTACTACGG
AACATGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028783XLOC_028783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045200-proteinTCONS_00045200-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045200-exon-sc0007181-1491911889:5..1031TCONS_00045200-exon-sc0007181-1491911889:5..1031Clytia hemisphaericaexon
TCONS_00045200-exon-sc0007181-1510915933:5..1031TCONS_00045200-exon-sc0007181-1510915933:5..1031Clytia hemisphaericaexon
TCONS_00045200-exon-sc0007181-1575043694:5..1031TCONS_00045200-exon-sc0007181-1575043694:5..1031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007181supercontigsc0007181:5..1031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.46233	6.85161	5.79465	6.67808	1.28675	1.52521	3.45716	4.54162	5.29949	6.519	6.01991	3.55286	12.9802	10.814	30.095	25.5835	37.996	29.1334	4.28774	4.63154	31.5762	29.1468	36.103	33.5463	9.08034	10.9716	33.3036	24.4355	26.2356	21.6292
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000836PRibTrfase_dom
IPR029057PRTase-like
Vocabulary: Biological Process
TermDefinition
GO:0009116nucleoside metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009116 nucleoside metabolic process
Blast
[Close]
BLAST of TCONS_00045200 vs. Swiss-Prot (Human)
Match: UCKL1 (Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.012e-40
Identity = 78/196 (39.80%), Postives = 127/196 (64.80%), Query Frame = -3 
Query:  291 LRNKDTRCKKFNFYGDRLMRILAEEALARLPNVEMGKVETPCGPAEGLVEIEGQNLCVVSIPRSGDILQEAVRQICPGVGIGKILIQRDESRSDKAPVLFYKKLPKNISQCFCILVDPMLATGGSAKRAIKVLLEAGVPEEKIMFINLICCPEGLQSMYEAYPKIKVVTCCVDEKLNENKFIVPGLGDYGDRYYGT 878
            +R+K+T   +F FY  RLMR+L E AL+ LP  +   V+TP G         G+ +  VSI R+G+ ++ A+R +C  V IG ILIQ ++   +  P L Y +LPK+IS    IL+D  ++TG +A  A++VLL+  VPE+KI  ++L+    G+ S+  A+P+++++T  VD+++N+   I+PG+G++GDRY+GT
Sbjct:  340 IRDKETSRDEFIFYSKRLMRLLIEHALSFLP-FQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRIGTILIQTNQLTGE--PELHYLRLPKDISDDHVILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGT 532
The following BLAST results are available for this feature:
BLAST of TCONS_00045200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UCKL15.012e-4039.80Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=... [more]
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