TCONS_00045269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045269
Unique NameTCONS_00045269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045269 ID=TCONS_00045269|Name=TCONS_00045269|organism=Clytia hemisphaerica|type=transcript|length=467bp
CAGAGTAATTTacttcaaatttaattttttgacttgaCTTGACTTATCTG
CACACCTCTGGTTGAGGATTCGTCCACTTGTTGACTTTCTCTCACCATCT
GACTCTGCCACGTGCGTTCAGCCGTTGCTAAGGGAAGGCCGGTGTCTTCC
CTTCCCTAATGACATCTTGCCATATTTTCGCTGGTCTACCTCTCCTCCTT
GTGCCTTGGAACTCTCTTTTCAATCACCTTTTTACAAGGCTTTCCTCTGG
TAGTCTTGCAATATGGCCGAACCATGACAAGCGTCTTTTCTTAATGACGT
GGACAATCGGCATTTGGAGCTGCTACAgaatcaccagaaccaccaagtCC
TGCTGCAGATttaccagaaccaccaactcctgctgcaaaaTCACCAGAAC
CACTAAGGCCTGTggcagattcaccagaaccaccaagtCCTGCTGGTATG
CTCACTTTTTCATTTAC
Run BLAST on NCBI

transcript from alignment at sc0007360:22..488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045269 ID=TCONS_00045269|Name=TCONS_00045269|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0007360:22..488 (Clytia hemisphaerica)
GTAAATGAAAAAGTGAGCATACCAGCAGGacttggtggttctggtgaatc
tgccACAGGCCTTAGTGGTTCTGGTGAttttgcagcaggagttggtggtt
ctggtaaATCTGCAGCAGGacttggtggttctggtgattcTGTAGCAGCT
CCAAATGCCGATTGTCCACGTCATTAAGAAAAGACGCTTGTCATGGTTCG
GCCATATTGCAAGACTACCAGAGGAAAGCCTTGTAAAAAGGTGATTGAAA
AGAGAGTTCCAAGGCACAAGGAGGAGAGGTAGACCAGCGAAAATATGGCA
AGATGTCATTAGGGAAGGGAAGACACCGGCCTTCCCTTAGCAACGGCTGA
ACGCACGTGGCAGAGTCAGATGGTGAGAGAAAGTCAACAAGTGGACGAAT
CCTCAACCAGAGGTGTGCAGATAAGTCAAGtcaagtcaaaaaattaaatt
tgaagtAAATTACTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028850XLOC_028850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045269-exon-sc0007360-1491911889:22..488TCONS_00045269-exon-sc0007360-1491911889:22..488Clytia hemisphaericaexon
TCONS_00045269-exon-sc0007360-1510915933:22..488TCONS_00045269-exon-sc0007360-1510915933:22..488Clytia hemisphaericaexon
TCONS_00045269-exon-sc0007360-1575043694:22..488TCONS_00045269-exon-sc0007360-1575043694:22..488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007360supercontigsc0007360:22..488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.293076	0	0	0.115878	0.287066	0	0	1.09745	0.664831	0	0	0.412915	1.26967	3.21589	2.60038	0.797718	1.1673	0.157667	1.43342	0.442917	0.263529	0	0	0.152626	0.155502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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