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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045287 ID=TCONS_00045287|Name=TCONS_00045287|organism=Clytia hemisphaerica|type=transcript|length=928bp
AGAGTAGGGAATAACTGGTACTTGCTGTTGCTGAACTACTTGTGGCGTTT
GATTCAACGAAGCAGGGTGGATCTTCACAACACCAGGAGCTTGTAGTACA
TGTATTGTAGGATGAGATATAATTTGCTTTGATACAATAGGCTGAATAAA
TTGATTAGGACGAACAACATTAAATCTAGGCACTTCATTCAGCGATATTA
TTCTTGGTGTAGCTTGACCACTTTTGACAACTGGTGGGTTAACAGAACCG
TAAAACATAGCTCTTGTTGTAACTATATTTGTATTTTGTTGTGGAAATGA
TTTTGCGGGAAGGACTTGAGGTTGAGGATACAACGCAGCATTGGTTTGTC
TATGATGTTGAATGGCATTATTTTCACGTACACTTTTTACCCATGGTGGA
ATTGATGTGACTGGTGTTTGAAAACCATGACGAGCTGACACTCCTTTTCG
GTAAGGGTCAGAGATGTTAGGTtttatattcatttttatttatttccatG
GATATAAGTCtatttctaaaacaaaaaagtaaTTATTTATATAGAAAACA
ATGGTCTctaggaaaaatagaaaaaatcatgAGGTTTTCTCAGCAGTTTt
aaataacaaattttggttggtcgATTTGCTATTcaattctattcaattgt
cttGGAATCTTAGACTTAAATCAGGTATATAACTctggtcttttgaataa
ctttacTACAGTATAATAAATATTATTAATGATAACGTCCTctaattgat
ttgtcttttacaacacaACTGTCACTTAGCAGCCTAGTATACCCTTGCAA
TCACGTTGGGTGTGTATTTCCAATGGGTTTTCCATGCCATGTGTAAATGT
GATAGGATGTCTAGGGTTGGCAGGAAAATTTCCAGGGTTTTGAGCTGCTa
tcgtttttatttcaaagattgaGTTTGA Run BLAST on NCBI protein sequence of TCONS_00045287-protein >TCONS_00045287-protein ID=TCONS_00045287-protein|Name=TCONS_00045287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MNIKPNISDPYRKGVSARHGFQTPVTSIPPWVKSVRENNAIQHHRQTNAA
LYPQPQVLPAKSFPQQNTNIVTTRAMFYGSVNPPVVKSGQATPRIISLNE
VPRFNVVRPNQFIQPIVSKQIISHPTIHVLQAPGVVKIHPASLNQTPQVV
QQQQVPVIPYS Run BLAST on NCBI transcript from alignment at sc0007415:17..944 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045287 ID=TCONS_00045287|Name=TCONS_00045287|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0007415:17..944 (Clytia hemisphaerica)
TCAAACtcaatctttgaaataaaaacgatAGCAGCTCAAAACCCTGGAAA
TTTTCCTGCCAACCCTAGACATCCTATCACATTTACACATGGCATGGAAA
ACCCATTGGAAATACACACCCAACGTGATTGCAAGGGTATACTAGGCTGC
TAAGTGACAGTtgtgttgtaaaagacaaatcaattagAGGACGTTATCAT
TAATAATATTTATTATACTGTAgtaaagttattcaaaagaccagAGTTAT
ATACCTGATTTAAGTCTAAGATTCCaagacaattgaatagaattgAATAG
CAAATcgaccaaccaaaatttgttatttaAAACTGCTGAGAAAACCTcat
gattttttctatttttcctagAGACCATTGTTTTCTATATAAATAAttac
ttttttgttttagaaataGACTTATATCCatggaaataaataaaaatgaa
tataaaACCTAACATCTCTGACCCTTACCGAAAAGGAGTGTCAGCTCGTC
ATGGTTTTCAAACACCAGTCACATCAATTCCACCATGGGTAAAAAGTGTA
CGTGAAAATAATGCCATTCAACATCATAGACAAACCAATGCTGCGTTGTA
TCCTCAACCTCAAGTCCTTCCCGCAAAATCATTTCCACAACAAAATACAA
ATATAGTTACAACAAGAGCTATGTTTTACGGTTCTGTTAACCCACCAGTT
GTCAAAAGTGGTCAAGCTACACCAAGAATAATATCGCTGAATGAAGTGCC
TAGATTTAATGTTGTTCGTCCTAATCAATTTATTCAGCCTATTGTATCAA
AGCAAATTATATCTCATCCTACAATACATGTACTACAAGCTCCTGGTGTT
GTGAAGATCCACCCTGCTTCGTTGAATCAAACGCCACAAGTAGTTCAGCA
ACAGCAAGTACCAGTTATTCCCTACTCT Coding sequence (CDS) from alignment at sc0007415:17..944 >TCONS_00045287 ID=TCONS_00045287|Name=TCONS_00045287|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0007415:17..944 (Clytia hemisphaerica)
atgaatataaaACCTAACATCTCTGACCCTTACCGAAAAGGAGTGTCAGC
TCGTCATGGTTTTCAAACACCAGTCACATCAATTCCACCATGGGTAAAAA
GTGTACGTGAAAATAATGCCATTCAACATCATAGACAAACCAATGCTGCG
TTGTATCCTCAACCTCAAGTCCTTCCCGCAAAATCATTTCCACAACAAAA
TACAAATATAGTTACAACAAGAGCTATGTTTTACGGTTCTGTTAACCCAC
CAGTTGTCAAAAGTGGTCAAGCTACACCAAGAATAATATCGCTGAATGAA
GTGCCTAGATTTAATGTTGTTCGTCCTAATCAATTTATTCAGCCTATTGT
ATCAAAGCAAATTATATCTCATCCTACAATACATGTACTACAAGCTCCTG
GTGTTGTGAAGATCCACCCTGCTTCGTTGAATCAAACGCCACAAGTAGTT
CAGCAACAGCAAGTACCAGTTATTCCCTACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045287-exon-sc0007415-1491911889:17..944 | TCONS_00045287-exon-sc0007415-1491911889:17..944 | Clytia hemisphaerica | exon |
| TCONS_00045287-exon-sc0007415-1510915933:17..944 | TCONS_00045287-exon-sc0007415-1510915933:17..944 | Clytia hemisphaerica | exon |
| TCONS_00045287-exon-sc0007415-1575043694:17..944 | TCONS_00045287-exon-sc0007415-1575043694:17..944 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007415 | supercontig | sc0007415:17..944 . |
Blast
The following BLAST results are available for this feature:
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