TCONS_00045354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045354
Unique NameTCONS_00045354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045354 ID=TCONS_00045354|Name=TCONS_00045354|organism=Clytia hemisphaerica|type=transcript|length=834bp
CTAAATTTTAGACCCTTGGGATGAATACTGTCTGCCATGGAGAAAAATTG
ACCAGTACTTACCACATCTTTCAAAAAGTTCTCTCATCACATTCTAATCA
ATCTGACTGGTCAAATTATGATGTAATTGATCCAAGTAGACAAATGAGCT
CTCAGAAAAACGCTTTGAATGTTGATCAATCTTTTGGAAAGTTAGCCGTA
CGGCATGGGACTTACCTTTCCGGGAAAAATGTTATTTATTCGTTGGAAAA
TCATCTTCACACGACCGAAGAAAAATGcacccaaaaaatcaaaaaatcca
gtCGTCTAAGTGGCGTGANTTTATTCGTTGGAAAATCATCTTCACACTAC
CGAAGAAGAATGcacccaaaaaatcaaaaaatccagtCGTCTAAGTGGCG
TGTTACGTATTGTGTAAACCAAAATCATTCATGAAAAATAGACAGTTTTT
AATAATCTGCTTCTTCGTGTGGGGCCACTCTAGAGAGTAAGGAACAACAT
CATATTAATTTGAATTCGATTAAAAAATGTGACCATCGAAGCGGAGAAAG
TACAAAGAAAGTGATTGACAATGACAAAAACCCTGCAAATAGGATTCAGG
AATACAAGTGATCGCTCTTGTGTAATTTGAaagcaaaactatttttatta
CGAAGGGCTAcaaagcaataaaaaaattctttgttatttTATGACTACCG
GGCAATAGTTTTTATGCATTATTTCCTCttgttacttttttttcaaaaat
caaacttttgataCTTTACACTTTTGAGTGGATTTGGGTCGAATTTGTCA
ATGTTGGCAAGTACCGTTGTTTTTCACGAGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00045354-protein

>TCONS_00045354-protein ID=TCONS_00045354-protein|Name=TCONS_00045354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MNTVCHGEKLTSTYHIFQKVLSSHSNQSDWSNYDVIDPSRQMSSQKNALN
VDQSFGKLAVRHGTYLSGKNVIYSLENHLHTTEEKCTQKIKKSSRLSGVX
LFVGKSSSHYRRRMHPKNQKIQSSKWRVTYCVNQNHS
Run BLAST on NCBI

transcript from alignment at sc0007592:4..837

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045354 ID=TCONS_00045354|Name=TCONS_00045354|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0007592:4..837 (Clytia hemisphaerica)
AAACCTCGTGAAAAACAACGGTACTTGCCAACATTGACAAATTCGACCCA
AATCCACTCAAAAGTGTAAAGtatcaaaagtttgatttttgaaaaaaaag
taacaaGAGGAAATAATGCATAAAAACTATTGCCCGGTAGTCATAaaata
acaaagaatttttttattgctttgTAGCCCTTCGtaataaaaatagtttt
gcttTCAAATTACACAAGAGCGATCACTTGTATTCCTGAATCCTATTTGC
AGGGTTTTTGTCATTGTCAATCACTTTCTTTGTACTTTCTCCGCTTCGAT
GGTCACATTTTTTAATCGAATTCAAATTAATATGATGTTGTTCCTTACTC
TCTAGAGTGGCCCCACACGAAGAAGCAGATTATTAAAAACTGTCTATTTT
TCATGAATGATTTTGGTTTACACAATACGTAACACGCCACTTAGACGact
ggattttttgattttttgggtgCATTCTTCTTCGGTAGTGTGAAGATGAT
TTTCCAACGAATAAANTCACGCCACTTAGACGactggattttttgatttt
ttgggtgCATTTTTCTTCGGTCGTGTGAAGATGATTTTCCAACGAATAAA
TAACATTTTTCCCGGAAAGGTAAGTCCCATGCCGTACGGCTAACTTTCCA
AAAGATTGATCAACATTCAAAGCGTTTTTCTGAGAGCTCATTTGTCTACT
TGGATCAATTACATCATAATTTGACCAGTCAGATTGATTAGAATGTGATG
AGAGAACTTTTTGAAAGATGTGGTAAGTACTGGTCAATTTTTCTCCATGG
CAGACAGTATTCATCCCAAGGGTCTAAAATTTAG

Coding sequence (CDS) from alignment at sc0007592:4..837

>TCONS_00045354 ID=TCONS_00045354|Name=TCONS_00045354|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0007592:4..837 (Clytia hemisphaerica)
TCATGAATGATTTTGGTTTACACAATACGTAACACGCCACTTAGACGact
ggattttttgattttttgggtgCATTCTTCTTCGGTAGTGTGAAGATGAT
TTTCCAACGAATAAANTCACGCCACTTAGACGactggattttttgatttt
ttgggtgCATTTTTCTTCGGTCGTGTGAAGATGATTTTCCAACGAATAAA
TAACATTTTTCCCGGAAAGGTAAGTCCCATGCCGTACGGCTAACTTTCCA
AAAGATTGATCAACATTCAAAGCGTTTTTCTGAGAGCTCATTTGTCTACT
TGGATCAATTACATCATAATTTGACCAGTCAGATTGATTAGAATGTGATG
AGAGAACTTTTTGAAAGATGTGGTAAGTACTGGTCAATTTTTCTCCATGG
CAGACAGTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028934XLOC_028934Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045354-proteinTCONS_00045354-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045354-exon-sc0007592-1491911889:4..837TCONS_00045354-exon-sc0007592-1491911889:4..837Clytia hemisphaericaexon
TCONS_00045354-exon-sc0007592-1510915933:4..837TCONS_00045354-exon-sc0007592-1510915933:4..837Clytia hemisphaericaexon
TCONS_00045354-exon-sc0007592-1575043694:4..837TCONS_00045354-exon-sc0007592-1575043694:4..837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007592supercontigsc0007592:4..837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.655757	1.17229	0.65852	0.782218	1.12898	0.867163	2.26237	2.66458	0.956685	1.30351	1.04786	0.740346	0.769761	0.952699	0.805817	0.864765	0.990572	1.86074	0.362051	0.694577	2.07945	1.73704	2	2.38178	1.65066	1.90373	13.9175	7.85604	0.719853	0.60851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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