TCONS_00045419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045419
Unique NameTCONS_00045419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045419 ID=TCONS_00045419|Name=TCONS_00045419|organism=Clytia hemisphaerica|type=transcript|length=269bp
AACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAGAAT
CTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGTGAGGTATG
TGCTTGTCAGAGTCGAGCCACTGGTCAAATGTACGCAATGAAGAAATTGG
AGAAGAAACGCATCAAAAAGCGGAAGGGTGAAGGGATGGCATTGAACGAA
AAGCAACTTTTAGAACGTATAGATTGTAGGTTTATAGTAAGTATCAAGTT
ATATGTTGTTGTTATTGTA
Run BLAST on NCBI

transcript from alignment at sc0007769:1..738+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045419 ID=TCONS_00045419|Name=TCONS_00045419|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at sc0007769:1..738+ (Clytia hemisphaerica)
AACGTTATTTGCAATGGAAATCGTTAGAACGAATGCCAGTTTCCAAGAAT
CTCTTCCGTCATTATCGCGTACTGGGGAAAGGTGGCTTTGGTGAGGTGAG
TTTATCTTTGGATAAAAGATAACGGGAAAGAAACAGAattgaagaaaatg
ttaaacTGAGCAAAAATGAGAAGAATTGATATAAAGTCACAAAAGAAATA
TTAGGAAACGACTACACgctttttaaaattgattgaTAATTGAGGCTCGG
CTGATCCTTTTTTCGTGATTtacaggcttaaatgttctagAAATGTTTCC
TTATGTGCATACCTTATTCACTTATGTATTAACTTAAAAGGGGACTTGGG
CATTACCCTAATAGAGCCTAATCTTCCTATGAAATTGTTACAAAAAAGTG
TATAATGGgctccagaaaatgtccgtacatgtgAATCTTCGCTCGGATCA
GTTCGGCATTTTTCAATGACACGGTAATACAGGTCTTAGCTGTACAGATA
ACAAATTTAAGGCTGGACGGCGAAAGGTATAATATTGACAAGCTGATTTT
GTTCGACATTTTAGGTATGTGCTTGTCAGAGTCGAGCCACTGGTCAAATG
TACGCAATGAAGAAATTGGAGAAGAAACGCATCAAAAAGCGGAAGGGTGA
AGGGATGGCATTGAACGAAAAGCAACTTTTAGAACGTATAGATTGTAGGT
TTATAGTAAGTATCAAGTTATATGTTGTTGTTATTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028997XLOC_028997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045419-exon-sc0007769-1491911889:1..95TCONS_00045419-exon-sc0007769-1491911889:1..95Clytia hemisphaericaexon
TCONS_00045419-exon-sc0007769-1510915933:1..95TCONS_00045419-exon-sc0007769-1510915933:1..95Clytia hemisphaericaexon
TCONS_00045419-exon-sc0007769-1575043694:1..95TCONS_00045419-exon-sc0007769-1575043694:1..95Clytia hemisphaericaexon
TCONS_00045419-exon-sc0007769-1491911889:565..738TCONS_00045419-exon-sc0007769-1491911889:565..738Clytia hemisphaericaexon
TCONS_00045419-exon-sc0007769-1510915933:565..738TCONS_00045419-exon-sc0007769-1510915933:565..738Clytia hemisphaericaexon
TCONS_00045419-exon-sc0007769-1575043694:565..738TCONS_00045419-exon-sc0007769-1575043694:565..738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007769supercontigsc0007769:1..738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6711	8.96937	5.85804	2.54719	72.8725	59.4227	91.6461	95.4849	59.1003	64.8047	50.6703	31.0115	45.1144	30.9698	34.9278	37.1326	38.8395	40.2516	31.1659	35.1707	34.4604	39.8526	41.5252	41.3479	45.0562	50.6777	26.0125	29.4437	35.7312	42.9052
Blast
[Close]
BLAST of TCONS_00045419 vs. Swiss-Prot (Human)
Match: GRK6 (G protein-coupled receptor kinase 6 OS=Homo sapiens GN=GRK6 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.345e-29
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 3 
Query:    3 RYLQWKSLERMPVSKNLFRHYRVLGKGGFGEVCACQSRATGQMYAMXXXXXXXXXXXXXXXMALNEKQLLERIDCRFIVSI 245
            R+LQWK LER PV+KN FR YRVLGKGGFGEVCACQ RATG+MYA KKLEKKRIKKRKGE MALNEKQ+LE+++ RF+VS+
Sbjct:  169 RFLQWKWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSL 249
The following BLAST results are available for this feature:
BLAST of TCONS_00045419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRK66.345e-2979.01G protein-coupled receptor kinase 6 OS=Homo sapien... [more]
back to top