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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045585 ID=TCONS_00045585|Name=TCONS_00045585|organism=Clytia hemisphaerica|type=transcript|length=3361bpRun BLAST on NCBI protein sequence of TCONS_00045585-protein >TCONS_00045585-protein ID=TCONS_00045585-protein|Name=TCONS_00045585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MEDTFYLQEGSIEAESVDGFQYDEITVDDEFSITGTDIDEDLETALHTAQRun BLAST on NCBI transcript from alignment at scaffold_1:246900..340229- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045585 ID=TCONS_00045585|Name=TCONS_00045585|organism=Clytia hemisphaerica|type=transcript|length=93330bp|location=Sequence derived from alignment at scaffold_1:246900..340229- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_1:246900..340229- >TCONS_00045585 ID=TCONS_00045585|Name=TCONS_00045585|organism=Clytia hemisphaerica|type=CDS|length=31914bp|location=Sequence derived from alignment at scaffold_1:246900..340229- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045585 vs. Swiss-Prot (Human)
Match: SPG16 (Sperm-associated antigen 16 protein OS=Homo sapiens GN=SPAG16 PE=2 SV=2) HSP 1 Score: 520.005 bits (1338), Expect = 2.454e-170 Identity = 264/601 (43.93%), Postives = 376/601 (62.56%), Query Frame = 2
Query: 278 SMEDTFYLQEGSIEAESVDGFQYDEITVDDEFSITGTDIDEDLETALHTAQEKDSLNSFEEKSAVSSIVTRTRPEVTEDFVRNFLVRMNMVKTLDTFQTEWYEFKEKGMLKEEDTSNVPDVYIRNRQLDELVNHLKDELQSFKNAGQKAKDTHLKLRKERDFHRMHHKRVVQEKDKLLNEIKRMKQHYENYEPTLKALRQKYETAMKEKMLTKLERDRALAQIEGIQTSQAQNQNFTEKQAKQPKY-----VPITPNYDIQDNFQYSSEISPTK-----HPKDSEFPADKGVNPMLAKQKITCPHVSRSGGFRLTNSIQGHSLGISGFALHPRKQILATVSDDKTWKLWGLLEGELIMTGEGHTEWLSDCHFSPSGTQLVTTSGDSTVKVWDFAEERCIVTFNDHTHAVWGCSWHHTGDFIATCANDGISKIWDLNSLRCRTTLRGHADSVNSVQFLAYSNTLCTCSADKTISLWDARTGLCAQTLYGHMHSVNHATFNMQGDVLASADAYGHVYLWDIRTCSISSKIDLGPHAINKIAFDPGSSVVACASNDGLVKIYEIENEQVTTLTGHEDAVQTVIFDRQGEFMLSGGSDSLVKVWS 2050
+ E +YL++ +I S D ++Y+EI DD FSI + +EDL A+ AQE+ + E+ V PEV EDF+ NFL++M M +TLD FQ+EWYE +KG+ + NVPDVY + L+ +LK +L+ +K A KA++ LK++KERDFHRMHHKR+VQEK+KL+N++K +K HY +YEPT++ L +K+ T +KEKMLT LERD+ + QI G+Q + + Q Q K P Q + + E + K + KDSEFP D NP L K + ++L N + H L +S ++ P K IL + +D+ WK+ GL + +++TG GHT+WLSDC F PSG +L T+SGD+TVK+WD + CI+TF H+ AVW C+WH G+F+A+ + D SKIWD+NS RCR TL GH DSVNS++F +SNTL T SADKT+S+WDARTG+C Q+LYGHMHS+N A F+ +G ++AS DA G LWD R ID+GP N++ FD V+A AS +G++ + ++++ ++ L GHE+ TV+F GE + SGGSD V+ WS
Sbjct: 37 AAEGAYYLEQVTITEASEDDYEYEEIP-DDNFSIP--EGEEDLAKAIQMAQEQATDTEILERKTVLP-SKHAVPEVIEDFLCNFLIKMGMTRTLDCFQSEWYELIQKGVTELRTVGNVPDVYTQIMLLENENKNLKKDLKHYKQAADKAREDLLKIQKERDFHRMHHKRIVQEKNKLINDLKGLKLHYASYEPTIRVLHEKHHTLLKEKMLTSLERDKVVGQISGLQETLKKLQRGHSYHGPQIKVDHSREKENAPEGPTQKGLREAREQNKCKTKMKGNTKDSEFPIDMQPNPNLNVSKESLSPAKFD--YKLKNIFRLHELPVSCVSMQPHKDILVSCGEDRLWKVLGLPKCNVLLTGFGHTDWLSDCCFHPSGDKLATSSGDTTVKLWDLCKGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDVNSERCRCTLYGHTDSVNSIEFFPFSNTLLTSSADKTLSIWDARTGICEQSLYGHMHSINDAIFDPRGHMIASCDACGVTKLWDFRKLLPIVSIDIGPSPGNEVNFDSSGRVLAQASGNGVIHLLDLKSGEIHKLMGHENEAHTVVFSHDGEILFSGGSDGTVRTWS 631 The following BLAST results are available for this feature:
BLAST of TCONS_00045585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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