TCONS_00045605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045605
Unique NameTCONS_00045605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045605 ID=TCONS_00045605|Name=TCONS_00045605|organism=Clytia hemisphaerica|type=transcript|length=1723bp
gtTCAATTTTGTTCTCAATTTATTTTGTACTTTACTACAGTGAAAGACAG
ACGATTTTGTTTCacttcttttttcttaaaagaatCATCAAAGTCCAAAA
CTAAAGTCGAAGTTGAAAAAAACGAtcgagaattttcaaaatgatgcAAA
GTGGATTTCAATTCGAGATTGCAGGACCTGGACTAAAGGAATTGGAATGT
CCAATCTGTTTAGGGATTGTTCGAAATGCAACAGAGCTTCCCTGTGAGCA
CTTGATGTGTAAAGCATGTTTGGAACACTATGAAAAAGAAGTAACTGATA
AATTAGAAAGAGAAAGACTCAACAACGACAACAGCAGCAACAACAATGTT
GTGTTCAGATGCAGTGTTTGCATGACACCTTACAAAGTAGAAGATAAAAA
GTCGGTGAAGTCCATGGATAGAATAGCACAGACATCCGTACATATCAAAT
GCTTACAAAAATAATGTGACTGGGTTGGCTGTATTAAAGACTACACAGAT
CACGAGAAGAAATGTAATTTCATTTGGATCCAATGTCCATTTGCTCAACT
TGGCTGTTCTACTGATGTTCTGAGAGGAGAACTTATGATGCACAATGAAA
CCAATCGACTTGCCCATGATTCATTAGTTCTGGCTGCACTCAGCTCCTTT
GCAGATGAGAGAAAAACATATCAGCATAAAATAAACCAGCAAGGTGAACA
AATACAGAATTTAGAAAAGCTTCTTCttaaaaatacccaaaagatcCAAT
CAatagaagaagaaaacgaaaagcTCAAATACAAAACAGACCAACAGGCC
ATGGTTTCCAATAAAACCACAAATgatattgaaaatttgaaatgtgaCCA
AAAACAATTGGAAATGAAAATTGATGGGCATGAGTTGACTGTTGGCAACT
TAACTGTGGCTGTGAATGATATGAAAAGTAAGACACAGTCTTCGGAAAGC
TTGGTCAATATTAACAGTAATGAGATCAACAATCTGAAAACTTTTGCTGT
TAGAATGAGTCAATTGCATATGAAATTGAGTGATACGAACATACACaacg
aaaataatattttcaattatCTTGAAGAATGGCAATATGTTGATAACGAA
GACGTCATCTCTTGGAATATTTTTGTGGATAATTTTTCCGAAGAGATTGA
AGAATATCCCTACCTAGACACCCTTGAAAAAGCTTCCAGGAgatacaaaa
atacaatttatCCAAAATACTGGAGTGAGAGGTTGAACAAATTACGCCAA
TATTTGGTTTGCGGTGTTGTGGCATGGAACTATGTAAAACTTACAATTGG
ACCACTAAGAAATATATTTGTTACCATCTACGAGACGCTAGCAGAATTTA
ACGAAGAAGTTAGCAAAGCAAAATATTGTAGACGTTCGGCGTTGACAGCT
AGCTATCGAAACTATGAAGAAAGTTGTCTCTATATTGCTGTTTTTTATTA
TCGTGCGATAGAAGATGTATGGGTTTTGGACTGGGAAGACATAGAGATGA
GCAAGTCTGTACTACCCGGAGAGATGGTGGCTTTGGAGGCCAGCAAACAT
TGGGAAGGAGACGTTATTTTAGAAATCAACGAGGCATAATTCAAAATGTA
CTAATCTTAAAATTGATCAACTTTAAATATCTCTAACGTTTAAGGAAATG
AAAggatttttctcaattttcagGACATTATTCGGTTATACGAGCAGTGA
AGTTTAGTTCACCTATATACTTG
Run BLAST on NCBI

protein sequence of TCONS_00045605-protein

>TCONS_00045605-protein ID=TCONS_00045605-protein|Name=TCONS_00045605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MMHNETNRLAHDSLVLAALSSFADERKTYQHKINQQGEQIQNLEKLLLKN
TQKIQSIEEENEKLKYKTDQQAMVSNKTTNDIENLKCDQKQLEMKIDGHE
LTVGNLTVAVNDMKSKTQSSESLVNINSNEINNLKTFAVRMSQLHMKLSD
TNIHNENNIFNYLEEWQYVDNEDVISWNIFVDNFSEEIEEYPYLDTLEKA
SRRYKNTIYPKYWSERLNKLRQYLVCGVVAWNYVKLTIGPLRNIFVTIYE
TLAEFNEEVSKAKYCRRSALTASYRNYEESCLYIAVFYYRAIEDVWVLDW
EDIEMSKSVLPGEMVALEASKHWEGDVILEINEA
Run BLAST on NCBI

transcript from alignment at scaffold_10:234643..238805+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045605 ID=TCONS_00045605|Name=TCONS_00045605|organism=Clytia hemisphaerica|type=transcript|length=4163bp|location=Sequence derived from alignment at scaffold_10:234643..238805+ (Clytia hemisphaerica)
gtTCAATTTTGTTCTCAATTTATTTTGTACTTTACTACAGTGAAAGACAG
ACGATTTTGTTTCacttcttttttcttaaaagaatCATCAAAGTCCAAAA
CTAAAGTCGAAGTTGAAAAAAACGAtcgagaattttcaaaatgatgcAAA
GTGGATTTCAATTCGAGATTGCAGGACCTGGACTAAAGGAATTGGAATGT
CCAATCTGTTTAGGGATTGTTCGAAATGCAACAGAGCTTCCCTGTGAGCA
CTTGATGTGTAAAGCATGTTTGGAACACTATGAAAAAGAAGTAACTGATA
AATTAGAAAGGTACCGTTAAAATTGGTTGGAAGAGGGGATGCTTATTTTG
AACGTGGCTTTAAGGGTCATTTTGGTGGTAGCTTAAGGGTCTTTTTTCAC
TTTGGCTAGTTTTCCAGGAGTTACCCAAACATTTTATGGTTAAATAACTT
CGCTAAATTATTATTAGCACGTTAAAAAATggtaaataattcaaaaagaa
ggAAAGTCTCaaatataaatttctttcaGACTCAGGCTAGCAGTACCAAA
AATGTGTGTGCAGCAACAGCTAATTAAAGCTAATTGAAATATGTTTCATT
GTATATTTAGAGAAAGACTCAACAACGACAACAGCAGCAACAACAATGTT
GTGTTCAGATGCAGTGTTTGCATGACACCTTACAAAGTAGAAGATGTAAG
AacattttcactttcactttcaaacTAAATTTTCATAACCCCAAATTTGA
TACACTAGGAATGAGGGTTTTAATTAAAGCCCActagaaatatttcaaaa
cattgggccatttcattttttgaccatacaggggggtggacgaacatttc
cagggggtaatccgagaagaatttccagggggtctaaagaagtttttttt
tcattttttccaggggtaaaaagttattcctgaatttccagggggtgaac
aactgattttagttcgtccaccctcacttttggtggttcttttgcaaatt
atgccattttccagggggtatctacaatttttttttacttgaaaaggttc
gtccaaccccctgtatggaaattttatggaacagcccattacCCAGCTAT
TTAATTTAActgtttaaaaatgtttttcgtaaATGGTTTTAGAAAAAGTC
GGTGAAGTCCATGGATAGAATAGCACAGACATCCGTACATATCAAATGCT
TACAAAAATAATGTGACTGGGTTGGCTGTATTAAAGACTACACAGTAAGT
TCAAAACTTCCaacaaaattttctagcttACAAAAAGTGCCTGACAAAAA
TGAACGACTGAAGTTAAATAACGTAAACAGCAAAATATGAGTGtcgaatt
attttcattttactttaatcggatttaTTTTCGTGAATCAACAAAAAGTC
TGTTAGAAATGGCCCTGAATACGTCAAATATTTGTCAAGATTCGATCTTA
AAATTTCGTGTGAATTCAATTTTGCGAGTCAGCAATCTCACTGTcaggaa
aaagacaaaaaatcgtgaaaacgattctcgccaaatttaatataattata
taagaaatcaaaaagaataaaaatcttTATCTTTCATACAGGATCACGAG
AAGAAATGTAATTTCATTTGGATCCAATGTCCATTTGCTCAACTTGGCTG
TTCTACTGATGTAAGTAAATCTCGTACACTtttcaaatcacattcattga
CCCAGATAAATTTTCTCGAGATCTTAATTgttttcacaaatttttacCAT
TCTTGCGAAATTTTCTAAATCAAATTTCAACGTAAAATATATCTTAAATA
TGACATTTTGGCGTTTACaggacaaatttaaaaatattttgacagaTTCC
GAAAATTAAATCcacgtgaaatttttcaaaatgctattcgcgaaaataaa
atcTAGAATATTTCGGAATTTTCCGGATTGCGAAAATTACTTTTCTTAAC
CATTAAAACGAGAACCCTGCCTCGAAAAggaatttctattattttacaaa
aaatattacaagcCAACTATACATTTTATTTCAGGTTCTGAGAGGAGAAC
TTATGATGCACAATGAAACCAATCGACTTGCCCATGATTCATTAGTTCTG
GCTGCACTCAGCTCCTTTGCAGATGAGAGAAAAACATATCAGCATAAAAT
AAACCAGCAAGGTGAACAAATACAGAACTTAGAAAAGCTTCTTCttaaaa
atacccaaaagatcCAATCAatagaagaagaaaacgaaaagcTCAAATAC
AAAACAGACCGGCAGGCCATGGTTTCCAATAAAACCACAAATGatattga
aaatttggaaatgaAAATTGATGGTCACGAATTGACTGTTGGTAACTTAA
CTGTGGCTGTAAATGATATGAAAACNTCTGTTAGAAATGGCCCTGAATAC
GTCAAATATTTGTCAAGATTCGATCTTAAAATTTCGTGTGAATTCAATTT
TGCGAGTCAGCAATCTcaggaaaaagacaaaaaatcgtgaaaacgattct
tgccaaatttaatataattatataagaaatcaaaaagaataaaaatcttT
ATCTTTCATACAGGATCACGAGAAGAAATGTAATTTCATTTGGATCCAAT
GTCCATTTGCTCAACTTGGCTGTTCTACTGATGTAAGTAAATCTCGTACA
CTtttcaaatcacattcattgaCCCAGATAAATTTTCTCGAGATCTTAAT
TgttttcacaaatttttacCATTCTTGCGAAATTTTCTAAATCAAATTTC
AACGTAAAATATATCTTAAATATGACATTTTGGCGTTTACaggacaaatt
taaaaatattttgacagaTTCCGAAAATTAAATCcacgtgaaatttttca
aaatgctattcgcgaaaataaaatcTAGAATATTTCGGAATTTTCCGGAT
TGCGAAAATTACTTTTCTTAACCATTAAAACGAGAACCCTGCCTCGAAAA
ggaatttctattattttacaaaaaatattacaagcCAACTATACATTTTA
TTTCAGGTTCTGAGAGGAGAACTTATGATGCACAATGAAACCAATCGACT
TGCCCATGATTCATTAGTTCTGGCTGCACTCAGCTCCTTTGCAGATGAGA
GAAAAACATATCAGCATAAAATAAACCAGCAAGGTGAACAAATACAGAAT
TTAGAAAAGCTTCTTCttaaaaatacccaaaagatcCAATCAatagaaga
agaaaacgaaaagcTCAAATACAAAACAGACCAACAGGCCATGGTTTCCA
ATAAAACCACAAATgatattgaaaatttgaaatgtgaCCAAAAACAATTG
GAAATGAAAATTGATGGGCATGAGTTGACTGTTGGCAACTTAACTGTGGC
TGTGAATGATATGAAAAGTAAGACACAGTCTTCGGAAAGCTTGGTCAATA
TTAACAGTAATGAGATCAACAATCTGAAAACTTTTGCTGTTAGAATGAGT
CAATTGCATATGAAATTGAGTGATACGAACATACACaacgaaaataatat
tttcaattatCTTGAAGAATGGCAATATGTTGATAACGAAGACGTCATCT
CTTGGAATATTTTTGTGGATAATTTTTCCGAAGAGATTGAAGAATATCCC
TACCTAGACACCCTTGAAAAAGCTTCCAGGAgatacaaaaatacaattta
tCCAAAATACTGGAGTGAGAGGTTGAACAAATTACGCCAATATTTGGTTT
GCGGTGTTGTGGCATGGAACTATGTAAAACTTACAATTGGACCACTAAGA
AATATATTTGTTACCATCTACGAGACGCTAGCAGAATTTAACGAAGAAGT
TAGCAAAGCAAAATATTGTAGACGTTCGGCGTTGACAGCTAGCTATCGAA
ACTATGAAGAAAGTTGTCTCTATATTGCTGTTTTTTATTATCGTGCGATA
GAAGATGTATGGGTTTTGGACTGGGAAGACATAGAGATGAGCAAGTCTGT
ACTACCCGGAGAGATGGTGGCTTTGGAGGCCAGCAAACATTGGGAAGGAG
ACGTTATTTTAGAAATCAACGAGGCATAATTCAAAATGTACTAATCTTAA
AATTGATCAACTTTAAATATCTCTAACGTTTAAGGAAATGAAAggatttt
tctcaattttcagGACATTATTCGGTTATACGAGCAGTGAAGTTTAGTTC
ACCTATATACTTG

Coding sequence (CDS) from alignment at scaffold_10:234643..238805+

>TCONS_00045605 ID=TCONS_00045605|Name=TCONS_00045605|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at scaffold_10:234643..238805+ (Clytia hemisphaerica)
ATGATGCACAATGAAACCAATCGACTTGCCCATGATTCATTAGTTCTGGC
TGCACTCAGCTCCTTTGCAGATGAGAGAAAAACATATCAGCATAAAATAA
ACCAGCAAGGTGAACAAATACAGAATTTAGAAAAGCTTCTTCttaaaaat
acccaaaagatcCAATCAatagaagaagaaaacgaaaagcTCAAATACAA
AACAGACCAACAGGCCATGGTTTCCAATAAAACCACAAATgatattgaaa
atttgaaatgtgaCCAAAAACAATTGGAAATGAAAATTGATGGGCATGAG
TTGACTGTTGGCAACTTAACTGTGGCTGTGAATGATATGAAAAGTAAGAC
ACAGTCTTCGGAAAGCTTGGTCAATATTAACAGTAATGAGATCAACAATC
TGAAAACTTTTGCTGTTAGAATGAGTCAATTGCATATGAAATTGAGTGAT
ACGAACATACACaacgaaaataatattttcaattatCTTGAAGAATGGCA
ATATGTTGATAACGAAGACGTCATCTCTTGGAATATTTTTGTGGATAATT
TTTCCGAAGAGATTGAAGAATATCCCTACCTAGACACCCTTGAAAAAGCT
TCCAGGAgatacaaaaatacaatttatCCAAAATACTGGAGTGAGAGGTT
GAACAAATTACGCCAATATTTGGTTTGCGGTGTTGTGGCATGGAACTATG
TAAAACTTACAATTGGACCACTAAGAAATATATTTGTTACCATCTACGAG
ACGCTAGCAGAATTTAACGAAGAAGTTAGCAAAGCAAAATATTGTAGACG
TTCGGCGTTGACAGCTAGCTATCGAAACTATGAAGAAAGTTGTCTCTATA
TTGCTGTTTTTTATTATCGTGCGATAGAAGATGTATGGGTTTTGGACTGG
GAAGACATAGAGATGAGCAAGTCTGTACTACCCGGAGAGATGGTGGCTTT
GGAGGCCAGCAAACATTGGGAAGGAGACGTTATTTTAGAAATCAACGAGG
CATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029159XLOC_029159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045605-exon-scaffold_10-1491911889:234643..234952TCONS_00045605-exon-scaffold_10-1491911889:234643..234952Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1510915933:234643..234952TCONS_00045605-exon-scaffold_10-1510915933:234643..234952Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1575043694:234643..234952TCONS_00045605-exon-scaffold_10-1575043694:234643..234952Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1491911889:235253..235337TCONS_00045605-exon-scaffold_10-1491911889:235253..235337Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1510915933:235253..235337TCONS_00045605-exon-scaffold_10-1510915933:235253..235337Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1575043694:235253..235337TCONS_00045605-exon-scaffold_10-1575043694:235253..235337Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1491911889:235785..235886TCONS_00045605-exon-scaffold_10-1491911889:235785..235886Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1510915933:235785..235886TCONS_00045605-exon-scaffold_10-1510915933:235785..235886Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1575043694:235785..235886TCONS_00045605-exon-scaffold_10-1575043694:235785..235886Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1491911889:236234..236302TCONS_00045605-exon-scaffold_10-1491911889:236234..236302Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1510915933:236234..236302TCONS_00045605-exon-scaffold_10-1510915933:236234..236302Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1575043694:236234..236302TCONS_00045605-exon-scaffold_10-1575043694:236234..236302Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1491911889:237649..238805TCONS_00045605-exon-scaffold_10-1491911889:237649..238805Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1510915933:237649..238805TCONS_00045605-exon-scaffold_10-1510915933:237649..238805Clytia hemisphaericaexon
TCONS_00045605-exon-scaffold_10-1575043694:237649..238805TCONS_00045605-exon-scaffold_10-1575043694:237649..238805Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045605-proteinTCONS_00045605-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:234643..238805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152315	0.0634408	0.318373	0.311472	0.0584887	0.184874	0.390325	0.607784	0.18397	0.0452708	0.329557	0.273332	1.7545	1.72617	1.09778	1.87768	2.28125	2.53886	1.44463	1.21065	1.15318	1.16587	0.696202	0.587738	0.676663	0.663891	0.642629	0.190406	0.433249	0.367844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top