TCONS_00045625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045625
Unique NameTCONS_00045625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045625 ID=TCONS_00045625|Name=TCONS_00045625|organism=Clytia hemisphaerica|type=transcript|length=673bp
NCTGCCTTTTTGTGTGAAGTGTATACCACATTCTTCACACTTGAAAGGTT
TTTCTCCAGTATGAGTTTTGAAATGTTCTGTCAAGTTCTTTTTTTGGGTA
AAGagtttaccacattcttcacacTTAAAAGGCTTTCCACCTAAATGAGT
TCTCAAATGTGCTTTCAAGTTGCTATTTTGAGTAAACTgcttaccacatt
cttcacattgAAAACCCATGACTTCACCATGTACTTTTTGTATATGCTCA
TTAAGGAACTCCTTTTTGTCGAAACAGAAACTACACTTTAtgcatttgaa
ataattttcatttttcctttctTCTTCATCTATAACAATTGAACTTGCCa
tttccattaaattttcagTATTTGACAAGTCTTCTTCCGTAGATATTGAC
AGATTATCGGAGGTTTCCATGGTTAAAACTTCATTATCTTTAGAAATTAA
ATCAGGGACCAAATCAATCTGCAGACTGGTCATATCTGTTTTTTCCATAT
CCAAAGTGGTCCTAACAAGATCATTGAAATCCAAAGtctggtcttcaaaa
tcaagTTCTCTCCCATTGATTGGTTCATTCCATGTAAAACTGAAATTATT
TTCCATGTTACAGTCTGtgacttcattttcaatctcCATTGTCAAGACTG
GGAgtttttatcttgattttttt
Run BLAST on NCBI

transcript from alignment at scaffold_10:287429..288101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045625 ID=TCONS_00045625|Name=TCONS_00045625|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_10:287429..288101- (Clytia hemisphaerica)
NCTGCCTTTTTGTGTGAAGTGTATACCACATTCTTCACACTTGAAAGGTT
TTTCTCCAGTATGAGTTTTGAAATGTTCTGTCAAGTTCTTTTTTTGGGTA
AAGAGTTTACCACATTCTTCACACTTAAAAGGCTTTCCACCTAAATGAGT
TCTCAAATGTGCTTTCAAGTTGCTATTTTGAGTAAACTGCTTACCACATT
CTTCACATTGAAAACCCATGACTTCACCATGTACTTTTTGTATATGCTCA
TTAAGGAACTCCTTTTTGTCGAAACAGAAACTACACTTTATGCATTTGAA
ATAATTTTCATTTTTCCTTTCTTCTTCATCTATAACAATTGAACTTGCCA
TTTCCATTAAATTTTCAGTATTTGACAAGTCTTCTTCCGTAGATATTGAC
AGATTATCGGAGGTTTCCATGGTTAAAACTTCATTATCTTTAGAAATTAA
ATCAGGGACCAAATCAATCTGCAGACTGGTCATATCTGTTTTTTCCATAT
CCAAAGTGGTCCTAACAAGATCATTGAAATCCAAAGTCTGGTCTTCAAAA
TCAAGTTCTCTCCCATTGATTGGTTCATTCCATGTAAAACTGAAATTATT
TTCCATGTTACAGTCTGTGACTTCATTTTCAATCTCCATTGTCAAGACTG
GGAGTTTTTATCTTGATTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029170XLOC_029170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045625-exon-scaffold_10-1575043694:287429..288101TCONS_00045625-exon-scaffold_10-1575043694:287429..288101Clytia hemisphaericaexon
TCONS_00045625-exon-scaffold_10-1510915933:287429..288101TCONS_00045625-exon-scaffold_10-1510915933:287429..288101Clytia hemisphaericaexon
TCONS_00045625-exon-scaffold_10-1491911889:287429..288101TCONS_00045625-exon-scaffold_10-1491911889:287429..288101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:287429..288101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63919	1.36223	1.01444	0.570167	0.584249	0.787624	0.512705	0.184059	0.193296	0.0798093	0	0.281229	0.277437	0.0528099	0	0	0.150073	0.186368	0.243838	0	0.469871	0.211075	0.576736	1.214	2.23599	2.95145	0.209685	0	0.135652	0.251184
Blast
[Close]
BLAST of TCONS_00045625 vs. Swiss-Prot (Human)
Match: ZN253 (Zinc finger protein 253 OS=Homo sapiens GN=ZNF253 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.260e-27
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = -2 
Query:   10 NYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQ 306
            N FKCI C   F +   L  H +K+H     ++CEECGK F Q++NL  H R H G KP++CEECGK F Q  NLT H K HTGEKP+KCEECG  F +
Sbjct:  170 NLFKCIICGKAFKRSSTLTTH-KKIHTGEKPYRCEECGKAFNQSANLTTHKRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNR 267

HSP 2 Score: 98.5969 bits (244), Expect = 1.648e-23
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = -2 
Query:   16 MEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 357
             + +S++   ++    E  ++C +C   F++   L  H +++H     ++CEECGK F Q+SNL  H + H G KP+KCEECGK F +  +LT H   HTGEKP+KCEECG  F
Sbjct:  181 FKRSSTLTTHKKIHTGEKPYRCEECGKAFNQSANLTTH-KRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTHKIVHTGEKPYKCEECGKAF 293

HSP 3 Score: 97.0561 bits (240), Expect = 5.552e-23
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = -2 
Query:   16 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 351
            ++S +   +     E  ++C +C   F+    L  H +K+H     ++C+ECGK FT  S L  H RTH G KP+KCEECGK FT    LT H + HTGEKP+KCEECG  F
Sbjct:  351 LSSHLTTHKILHTGEKPYRCRECGKAFNHSTTLFSH-EKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTGEKPYKCEECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAF 461

HSP 4 Score: 92.0485 bits (227), Expect = 3.158e-21
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2 
Query:   13 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFT 345
            S++ I +     E  +KC +C   F     L  H + +H     ++C ECGK F  ++ L +H + H G KP+KC+ECGK FT    L++H +THTGEKP+KCEECG  FT
Sbjct:  325 SNLTIHKRIHTGEKPYKCEECGKAFHLSSHLTTH-KILHTGEKPYRCRECGKAFNHSTTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTGEKPYKCEECGKSFT 434

HSP 5 Score: 90.8929 bits (224), Expect = 6.484e-21
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = -2 
Query:   16 MEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 357
             + +S++   ++    E  +KC +C   F++   L  H + VH     ++CEECGK F   S++  H + H  GKP+ CEECGK F    NLT H + HTGEKP+KCEECG  F
Sbjct:  237 FKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTH-KIVHTGEKPYKCEECGKAFKHPSHVTTHKKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAF 349

HSP 6 Score: 90.8929 bits (224), Expect = 7.068e-21
Identity = 46/99 (46.46%), Postives = 56/99 (56.57%), Query Frame = -2 
Query:   16 NENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 312
             E  +KC +C   F     +  H +K+H     + CEECGK F   SNL  H R H G KP+KCEECGK F    +LT H   HTGEKP++C ECG  F
Sbjct:  280 GEKPYKCEECGKAFKHPSHVTTH-KKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAFHLSSHLTTHKILHTGEKPYRCRECGKAF 377

HSP 7 Score: 87.0409 bits (214), Expect = 1.694e-19
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = -2 
Query:   10 FKCIKCSFCFDKKEFLNEHIQKV-HGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQ 300
            F+C K    F K  F N +  K  H  +  F+C  CGK F ++S L  H + H G KP++CEECGK F Q  NLT H + HTGEKP++CEECG  F Q
Sbjct:  144 FQCDKYGKVFHK--FSNSNTYKTRHTGINLFKCIICGKAFKRSSTLTTHKKIHTGEKPYRCEECGKAFNQSANLTTHKRIHTGEKPYRCEECGKAFKQ 239

HSP 8 Score: 76.2554 bits (186), Expect = 6.796e-16
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -2 
Query:   43 ASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPF 348
            ++++   E+    E  +KC +C   F     L++H ++ H     ++CEECGK FT +S L  H R H G KP+KCEECGK F    +L +H K H   KP+
Sbjct:  380 STTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKH-KRTHTGEKPYKCEECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAFNWSSDLNKHKKIHIERKPY 480
The following BLAST results are available for this feature:
BLAST of TCONS_00045625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2532.260e-2753.54Zinc finger protein 253 OS=Homo sapiens GN=ZNF253 ... [more]
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