TCONS_00045702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045702
Unique NameTCONS_00045702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045702 ID=TCONS_00045702|Name=TCONS_00045702|organism=Clytia hemisphaerica|type=transcript|length=962bp
ccagaaatcagaaaaaacagagttagagataggaaatagagaaaaagagg
agaagggcggaattggtgattgaaacTAGATCTTTCCCATGAAGACGCCA
AGCTGCGTTCGTTCTGGAAATTAAAAGTTAAAccaaaaaaaccaaaaaga
tCAAACGAGaaATGAGTGTTTATGCTACAAAAGGCGTGAGAATTCTACTT
GTTGGTGATGATGGTGTAGGAAAGACCTCCTTAATCCTTTCGCTGGTCAC
AGAAGAATTCCCTGATGAGGTGCCATCACGAGCTGAAGAGATAACTATTC
CAGCTGATGTGACTCCAGAGAAAGTACCTACACACATTGTCGACTTCTCT
TctGCAGAACAAACTGAAGATGAGCTGAGGTTTGAACTTGAGCAGGCAGA
CGTCGTTTGTGTTGTCTATGCCTGCGACAATGATGAATCCATCTCAAGGA
TCACTTCATACTGGCTACCCATTGTTTTTGATGTGTGCGGAGAACCTCGC
AAACCCATTGTTTTGGTGGGCAACAAGTCAGACTGCATGGAAGCAGAGGG
TGACAGAATGAATGAACTACTCAGTATCATGGACCAGTACCCTGAAGTTG
AAACTTGTATTGAGTGTTCAGCCTATGatttgaagaatatttcagaGTTA
TTTTACTATGCGCAAAAAGCAGTTCTACATCCGACTGCACCTCTATACTC
ACACGACGAACAAATGctTACAGAAAAATGTCAAGAAGGCCTTGAAAGAA
TTTTTAGGATATGCGATCTTGATAATGATGGAGTACTCAATGATACCGAA
TTGAACGAATTTCAGAAACGATGTTTTCGGAATTCACTCCCACCACACGG
CTTACAAGAAGTGAAGAACACCGTTCAAAAACACATGAAAGAAGGTGTCA
CCGAAGAAGGAGTCACCATCGAAGgatTCTTGTACCTTCACACGCTATTT
ATACAAAAGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_100:789326..811460+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045702 ID=TCONS_00045702|Name=TCONS_00045702|organism=Clytia hemisphaerica|type=transcript|length=22135bp|location=Sequence derived from alignment at scaffold_100:789326..811460+ (Clytia hemisphaerica)
ccagaaatcagaaaaaacagagttagagataggaaatagagaaaaagagg
agaagggcggaattggtgattgaaacTAGATCTTTCCCATGAAGACGCCA
AGCTGCGTTCGTTCTGGAAATTAAAAGTTAAAccaaaaaaaccaaaaaga
tCAAACGAGGTAGGATTCATTTTGTTAGGTTTTTTTTCAGTGAAATATAT
ATACGAAGCTTTGTGCCTCAAACAAATCAAGAATGGTCTAGACTAGTCGT
ATTGCATAAGGGTTGCAAAGCGATCCAGACTCATCATCCATGCCATCCAC
CACCATCCACCCTCTCTCGCTCCTCTCATTTACAATTACAATTTTGCAAg
ctgctagcaaaataagatagACACAGTGAACTAGCTGTATTGTCTGAGGG
TTACAAAGCAATCCAGACTCCAAATCAACTTACAATTTGCTAGCAAAATA
GGAGACACTCTGAAAAATCCCTAAAGAAAAGAGACAGACAGACAGCTCTA
AAACTCTAAAATAGCATCTAATAacaacatgaaaaccagaatatgattct
tcaatgggaattaAAACTATAAAGTGTACTTACAAACAACaataccgtaa
atcctcgaataagcgctcccccttttagttaaaataatattataagtTAA
GTGCctcgctcgaataagcgccagGCAGGGaggtagcgactccagaagtc
atgcaactttcgttgatgtcaaaccaaatgtttcatttttccgtgaactt
tgaacccttcaaactttttttctatgtatgttAGAGCGTTCCggttttac
taaatgaaagcccgtgatcttagctttcggtatataacactgtgctgttt
acacgggctagacggcaaattggtaaaatgccaaacgttttgcaacattt
tgaaaattgtttgctgacaggagaaaaaaaattagcaactatcgatgaac
aaatgtgtctggaaacggaggaaaatgtatagaccttttttcaaagaggc
caccttgttgaataattatgtagtccagcagaaaaacaatgataataacc
atgcataattattacaatatacatgatacagtaattatgcatggctctat
cattgtttttatggctggactacataattattcaacaggacgtcctcttt
gaaaaaaggtctatttgaaggctgaaactttgtatgtttatcagaaaaag
gttgaggaataaacctttttttaaagaggccaccctgttgaataattatg
taatccagcagaaaaacaatgataaaaccatgcataattattacaatatg
catgatacagtaattatgcatggctctatcattgtttttatggctggact
acatataATTATttaacaggacgtcctctttgaaaaaaggtctattcaaa
aatcacattcgctaattttagttctttcattttcatgtagtttttttcac
ttttttgcttcttttgcataggaatgtcccaaaaaaaagtttttatttct
gccgaaatggattttcttttcatttggggtttttcctttttcagaagaac
ttattctttactcataagtttttgttcctccatttccagaggccccttga
aaatgggtcctacgaccttttttgactcatttcaaccttttccaagcttt
tttcttcaaaaacaaaaataaaacaatgcaatgtcttcttttttcaaaaa
aagatatatctttcgttattttgataaatatactaaatattttacaaatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaatttttccaagctattttcctaacctgttttttcacatttttagt
caaatttttgacactaaaatttgaatatctttacaaccacttatcctttg
gaggcctatgacccctcattttctttctttttcaaagctctacaagatag
gatggattttgaaaaaaaaattaaaatttgaaaaatcttctggagttgct
aagggAGGGAGAGGGGCGCTTATTTgaatattgttattgattgaataaga
tattgagtacatacttgtgtcttaaaaggaaagaaagcgattaagaataa
aatgatagaaattgtcaattggatttttccaatttttcttttattcatcc
ttttttgaaaaatcaatccTTTGTCTTTGAAACCAGTTACTCTTTAGAca
ggaatatttttttaaatctgatgaatacttgacgggtcagagctgtgagt
cagattttggcctcaaaaaaattacagtgggaaattcgaatttagcgctg
tcctcacttactaaaataaagaccaaatttcggaacttgcgctttcttta
agaaagtgtgaccagtgaaacaataacaggaTTTGATTACGCACAGAGCA
agcgttagcgagcggagtgcgactcttttggcaaacgcatgcgcgtaagc
aaaatttacaaaatttcaatcatATGCGGgcccaaaaaatgaaattcagt
ttttttcacaatttttttcgtctagccgctattccaccatgtttagcctc
tggaatgtttcaactttgaaaatttcgtcaaaattagcgtttttaagAGA
Aatcgttgcagtgtcaatctttcgcaaatttaaaaaaaaattgacgtttt
ttaggacccttggggcataaggtacctgttgaccgcaaaaatttcaaaat
tcgcgaattgaccgttgacaacattaggatAAAGGAACCCACTGACGTCa
cgggtttgggaaaaacttcaaaatgtgatatctcgagtttgaagaagagt
GGAGAGGTCGTTGACTCCTCATTttatcgggaattttatggggaatgaga
tgagagggtttataaggcttgagtaggactttcaaatttggctgaatttt
tagccattttcaacTGATTACACATAGGGTCCTCCAGGCTTCAGGTACCC
CCAATAAAATTAGGTACCCCCAAcgatttaggtacccccaaagtTGTTTG
GATTCTTAGGTAGCCCCCAGGATTTGGTACCCCCATTAAAATTAGGTACC
CCCAAcgatttaggtacccccaaagtTGTTTGGATTCTTAGGTAGCCCCC
AGGATTTGGTACCCCCATTAAAATTAGGTACCCCCAAcgatttaggtacc
cccaaagtTGTTTGGATTCTTAGGTAGCCCCCAGGATTTGGTACCCCCAT
TAAAATTAGGTACCCCCAAcgatttaggtacccccaaagtTGTTTGGATT
CTTAGGTAGCCCCCAGGATTTGGTACCCCCATTAAAATTAGGTACCCCCA
AcgatttaggtacccccaaagtTGTTTGGATTCTTAGGTAGCCCCCAGGA
TTTGGTACCCCCATTAAAATTAGGTACCCCCAAcgatttaggtaccccca
aagtTGTTTGGATTCTTAGGTAGCCCCCAGGATTTGGTACCCCCATTAAA
ATTAGGTACCCCCAAcgatttaggtacccccaaagtTGTTTGGATTCTTA
GGTAGCCCCCAGGATTTGGTACCCCCATTAAAATTAGGTACCCCCAAcga
tttaggtacccccaaagtTGTTTGGATTCTTAGGTAGCCCCCAGGATTTG
GTACCCCCattaaattatgttttttaggtacccccacttaaagggggggg
gggggtgacaccatgattacgtcatcaaaatagaaaacatgcgatatctc
gagtttgaagaagagtTGAGAGGTTGGGTAAGCAgtgtgaaaaaatcaaa
acaaaacacccgaaaagaactgaactctcggaataaataatggaaaaacg
taaaaaaactattttttgatgagctcttactccattctttccaaaaattC
AGTGAAATTAAAACTGATTCAATATATAGaatttattacaaaactactcg
acaagcacgtgacacgacccaaagcaaataaaatccAGCTTTCGGCACTT
TCGTTCGTTTCGTGAAAACCAAACAGTTCTTTTCATCAATCATTCAATGT
ATgcataaaaactttaaattctttaatacttATTGTCAATaatattttcc
ataacaaaacgagggaaattcaatgtctttgattaaacCAGGTAGGGAGg
gtttttgtaaaaagtctTTTGTGTCTCTCCCAATCCTCCACAAAACTTTG
TCTTTGAAAAAGCTGCTGCATATATTTTGAAGCTTCTGGATcgacaaaat
tttttattttgatgtgcataATTTCGGCAAGAACTTcggtcgaatgtttt
tgttcgaatctataattcgaatctaacaagattttcgaacaaaaacattc
gaaattatagagacctggaagttatttttcattttttaattttggaattt
ttgcttcctttagctttctgagttatttttgattttctaactcgggaaat
tgtgcttcctttatccgagttatttttctttttttaacttgggaattttt
gcttcctttaactttctatAAATAGATTAAATCTATTAAATTTTACGTTT
AATAAAAAGGCTCGCCTCACtcgctcgtaaaatatttctcgtattgcact
caaagtcatgcgataactattacttattgagTCTTCATTGGATTGGTAAT
CATCGATAGAATCTATTGGATCAATTAAAAATCGAGTTCATTTCAGTAAA
Gttaaaagtttattaccctttaatttagggccaaaatgacgtcctcctca
aaaaaaactttaacaatgtagtcactaaaaactaattagcatgctttcat
tcaACGGAACGCAGATATCAGTGTTGCTGGAATCCctcagatccttggtt
agaaaaagctatacctgtttacttttttcttgccagattcaacaagccat
caaccaacaaaattaatactgacatcaaaaaattcacacaacctttccac
tagacacttctaaattatctgccattatgaagatgttccAAAATTAATCA
atcgggtttacaatcggaattcctctgggagttagcgagtcgggaaatgt
aaagttatgtaataggtaatacataatttttcTGGGGGTTAAATGtataa
atgaaattgaaatggtttgtttttttcttcattatatatttaagtttcca
ttatcaaaattctagaaatgctagtttgtagaccatattagaaaatggtt
atataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ataaacacttacaaaagctattacttactatttttacccccgctttTTAA
ACAGCGTCTTCTGTGGGCGTGATATCAGGCGGAGACAAAGCGCCCTCGTC
GTAAGACTCTCGGGTCgtcttattgtttgttccttttgtcgAGTCTGTCG
GTCCTATTGTTCATGCTAAATCCATACACAATGACGTCAATGTTTGGTGG
CAtacctgaaaagaaaaagaaaaagattatcataatatttttgcatgaat
tacgctaccttatacgtcattataaaattatacaaaacgaaaGCGAGTCT
AGGCCACCCGCCTAGAGTGCGggccctaatattttttctctcgcagtctt
caggggaaaacgaaagtgatcaaTATTTGGCAAAGAAAAACGcccagtca
aaattttttcatcttcgcaggatccattcccaacctcaaaatacatcttt
ttgtctagAGGTGTTTGTTTGGCAAATTCTAttgatcactttcgttttcc
cctgaagactgtgagagaaaaaatattagggccCACACTCTAGGCGGGTG
GCCTAGACTCGCtttcgttttgtataattttataatgacgtataaggtag
cgtaattcatgcaaaaatattatgataatctttttctttttcttttcagg
taTGCCACCAAACATTGACGTCATTGTGTATGGATTTAGCATGAACAATA
GGACCGACAGANaatctttttcttctttttttttggcaaagccaaaaact
ctattttttttcttccctcaagctaaaaaggttacgggTTTTGGGTTTTG
GCGCTTCAGAAATTTCTGGAAcagctaaaaaaacactatttttctctccg
GAAAGTTCCTAAGCTCTTCCGGTGCTTCCAGAGCAAGTGATTCTTAACAC
AATTCCGGAGTTCCGGTGCAGACCAATCGCCAAAAATCGTGCTCCGGAAC
ACCGGAAGTGCTCCGGAATCTTCCAATGTGTTGGAGCACGATGAAAAAAC
GGCACTTTTTGCTCTGGACGTTTCCGGAGCACCGGGAGGGTCCTATAAAA
TCAAACTATAAGCCCTCGAACGATTGAACATTTTTACTTGAATCGTCTGT
CGGaatcaaaacataacaaaacAGAAATGAAAATATCTACAAAGATGGCT
TGAAGGACCTCCCAGCCCTTCAGAAATTTCTGGAGCAGCTaaaaaaacta
tattttttctctggaaagtTCCGGAGCTCTTCTTCCGGTGCTTCTTCGGA
GCAAGCGATTTTTAACACGTTCTAAAAGACGGTTTTAAATATGGTTACAA
TAATATTTGTCCCCAGTCTTTGAGGATGATGGTCCagccattaatgaaat
tgaaattgtcaCATATTTGAAAGCATCACTggtctaaatatcaaaactac
CATGATGAGTTGGCTGTTATTTTTAAATACGCATGTGCGCAGTTAGTTTT
CACATGATTAGCACAGGGAGCACTATCATAATTATATAGCGGATATCTTG
CTCCGGAACACCGGAAGTGCTATGGAATCTTCCAGTGTTCCGAAGCACGA
AAAAATGGCACTTTTTGCTCCAGACATTTCCAGAGCCCCGGGAGGGTCct
tggcttgttggttctttttgGCTCTTggccagtttgaatttgtttttttt
gacaAGTTCCACAAATTTGATTACACGTGTATGTATTGTCAATGTACAGC
CAAGGCAAAGACATTCCATTGTAATTGGTGGGTGTCTTTCAGTGGGTGTG
GGTGTGTGAGTGCGAGAAACAAATTCAATATTTGACATCATGGGCCAAGA
TTCTTGTTATAGATTGTCTATTTTCTCAGATGGTTAGGTAAAACTTCACT
AAAATTCATCaattttcgataaaaatcaCCAATCCTTCTGGTTTACCCGA
GCTTGGAAGCCGGCATCATGATGCCATCAAGGCCAGAAGAAGGTGGTGGC
CGATTGCTGGTTTGCACACTAAAACAATGCACCGACGATATCGTTGATAA
AGACAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNGTGAAGTAAAACCCAAACATGGTGAAAAATGGCAAATCCA
CGAATACGAAATGAAAGACTACAAAGTTGTTAACTCCACTAATACCAATA
ACAACAAAGGTTGAGGAATCGTTATATTGGCACACTCATCAATAGACCAT
CTAGTTGCTGACATCGAAAGTCctgttgaatttgaagaaaccTGTATTAT
CGAGATTCGTCTAGCAAAGAAAGACAAACTTGTATTTGCGTGTATATACA
GAAGCCCTACGAAGCAAGCTAACTCGCACGAAAACAATTCTATGTTGAAC
AGCCTGTTGAAGTCATTGAGTCAAGANNNNNNNNNNNNNNNNNNNNNNNN
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CACCTCGGGCCTGTGAGCTTGTATacatcataataataataaaaaaaaaa
ataatcttgtTTCCAGAAATCAACCGGGCGAACTATTTTTGAAGAGTCAC
CCAGCTACtacagaaataatttttgaggaaattgaGGAAGAATACTTTTT
AAACTCAAGGTTTCAGATAAAAGTTTCTCCTCATcaattataaaaacatt
ttttgtgtaCAAGTGTATAATCTAGCTTTTGTGTAaaagaaaacagcgtt
tttgattttcaaagtcATCACTTTCAATAATTGCGCCAGTcctaaaatgg
tcaaaatatattttagtgtattttaacatttttccaGAATTTAAAGTTTA
GGCGAGAATtactattttagcacttccacattctttcattgaatatttca
attttggacgggttcggtggcttctgggctatattccaagccttattgga
gcaaatttgagtttttaaatcctgagatcctaaaaATACTAAGTCTTTTG
TTAATAAAACTcggagttaaaactctactttccaactgtagtttaacgcg
cttaataaaaacatttgtGGTATTTGaaatttcgcagggaaatccccttt
gtctcaaatattttataCATGATTGTAGACCAGACTCTATCAACCAGTCA
ACATcttaaaacaaatattttggtttatatatTTGCTATTGGCAAACATA
ACCATgcaacaaactaacaaacaacTAGGGCCGAGCAGCCACAAGTGTCT
GTGAGAAGCTAGAGTAGAATCAGctgaaattaaattttctaaaaggcTAT
TACTAAGACTGTAGACGGCTTTTAATATGACTGTACCAAGACCAGTCCAA
TTTTTAGGTACTTTTTATAGCCACTGCACTGTCTCTTGCATTGAACTCTA
TACTGAAATTTATACCTTTTATGCACCATCTAATAACAAAggaataaaat
aaaacacaatatagcagcagtgctgcaaataaagAAATTTCATTTGGCCG
GTGATTTTTCAAGTGTAACGAGAATGATTTGAGCAAGGAGTCTGGTGGAA
CCCCCTTAGAAAACTTTGTCTGAAATGATCTTTAGACTGGCTAAACACTT
GTTTTAATTTAAAGTCTATTCCTCTTTTAATTAGAAGCGCTATTAGGTTT
TTATCTAAGCCTCTAGTTTTCAAAGTTTAACCAGACGAAATGAAAAATTG
AGCTTCAGAATGGCCGgtagaaactacaaaatgaTCGGTATTCACCGGTC
ACCAGttgttatttgcagcactgagctgtttgtttttctcttcctttTGT
cattcagaaaaaccaaaaccaaTAACCAGGGCTataaaacaaacattttt
gtaAGTTTGATTTCCATCATACCATCATGATTTCCATCATATACTGTCAA
AAAATCCCAAGTTAAAAACAATTGAATGAAGCGAATAAAGCATGCCGGTG
CTAATCAGCTAATTTagctaatttttttaaaaatttttctctttagaaAT
GAGTGTTTATGCTACAAAAGGCGTGAGAATTCTACTTGTTGGTGATGGTA
AGgacattgtttatttttttagttttcattaTGAAttaattccaaaattt
ttgaaccctTTATCAACCTTGgttttttttaaatcctacAATATTGTTTt
gcaattttcaaattattcttttaaagaatttttgttttgtttgcatTGGA
AATAAGTGTaggaaaaatgctaaaaatcatcttttttcACCTGGTTACTT
TTTAGATGGTGTAGGAAAGACCTCCTTAATCCTTTCGCTGGTCACAGAAG
AATTCCCTGATGAGGTTGGTATGTTGTCCCATTGTCCCAggaacaaagaa
aaattttccaaagtcatttaagCCGTTCCTTTTCAAAgttaaaaagtcaa
agaaacttAGCTTAGTAAAATTTACTATGACTTTGTAGTGATTTAGTTTA
ATTTTGAAGATGTACTAACATTGATctgtttaaaaattttataaagtttC
TTGTGTCAGTTATGGAAGGTTATGGTCCATATTCATTTCTATTGCAAaga
ttgatttttttaataaaaccaaAGTTGACCATGCTCCCTCAAGGTTTATT
ATAACTTTAGAATTTTCATTCCAGAATTCTTGGATATTCTCTATTTAGAA
ATTTATGTTTGGAATCAGCCTGAATCAAACGATCTCTTCTTATTCAATTT
ATAGGTGCCATCACGAGCTGAAGAGATAACTATTCCAGCTGATGTGACTC
CAGAGAAAGTACCTACACACATTGTCGACTTCTCTTGTAAGAAGTAGTAC
TTTTCCTATTAAAGcctactttttttaaagagttcagatgttttaaaaac
agggccattgaaattgaaattgtcaACCATGATTAGATAATCTATGCCTG
ATTGAACCACTTCTATGGGTGCTATCAAATGGTGCATGGGTCATGGGGCT
CCCAGGTCACTGCTGGCAGTATCCAGTCAAAAATGAGTTATACCGCACTC
ATTTTTTACTAGAACGTACCCTTTTCTCTGGAATGgcagaaaaattcaat
ttcctCTTTTGTACTAAGTCATTTAAGTGATTTAAAACCGTTccttttca
aagtttaaaagtcaaagaaacTTAATTAATTTAGTAAAAAGTCTCGTAAT
ACCTACCTAGTACATTCATGGCAATAGACCTTAtctgagtttttgatttt
tctaaagcagtgatgcattgtgggattgttacGGGGTATTAATACTAGTA
ATCGtataattgcacgacaaaacatacgattccgaggaaatcgtcagtaa
ataatcattagtaaatcattgattttttgtaaacattcaaaaacctcctt
tttttcttttgtttaaaaagaaaacattgcagtgtaatttttctttgttt
tcaattaaaagaagctattgtaacgtaacatttctttgttcttttttata
ttgaagaaaaaaaatgtctttgttttttattatatagtaaaaagaaatct
ctgacacaggacttgggagagaaaagaataaggggacaaaagtgtccccc
cgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaatcgcac
tcctctaaaccaatcagattcgagtaattttgcacggctgacgattacac
TAAAAATCTCTTATGAATTCCTCGAGCTTCTTAtataaatttgttaaaat
tttgaatttttttacattttagctGCAGAACAAACTGAAGATGAGCTGAG
GTTTGAACTTGAGCAGGTTAGTTAGTTAGCtcttcaatattttctttcgt
TTTAACCGAAGAAGGAGGATGGGAAATTTTGCATTGTAGGGAGGGAGGTA
TGAATCCTAATTTATGGTATCCTCTCTGAAATGTATACTTTTCTGTGTTT
TTGTACCTTCAAAAGGGACATTGTCCAAATCGTAATTTATTCCCAATTTT
TAAAGTCAGTGCTTAGTGTGGTTTGCTGGAAAAATTCAACAACCGTTTGG
GATCTGTATTTTTTAAGCTTTAGGGATGAAAAAGGGGggcatttttttat
tcaatctatATTTTGTTTTAGGCAGACGTCGTTTGTGTTGTCTATGCCTG
CGACAATGATGAATCCATCTCAAGGGTAAGAGAACTATTAAAAGGTTGCA
GAAAATTTCTGTATTGTTAACACTTTTGTATCAGTTAGAGGCTGACATTA
CGTCACGggcccaacagctgattggttgtaagtgacgtaaaatcagtcaa
tacgtcacttgcaatcAATcggctgttgggtccgtggaagacattgcaat
ggtgcatatcatgaatacagtaCTGATTGCTTTGTTGTTTTTGCTATATT
GCAAATAAaacaattgaattttgattccAGACGTATgggtaaatttattt
tttgaaacaaacaaatttgcgacgaagttgttttttttttccagtggaCA
CCATACTTATAAACGTTGAGCTTCTTtgtcttattcatgatatgcaccat
tggagagtcttctgagaacttttaaaaaaatttttcacccaatacgtcac
ttaaacaatagaaaaagtgacgtattgggtggaacaaaaacagaaaagtt
gcataaagtcattgcagtggtacATATCTTTAATTTacttcactttttca
aaatatgctAAATAAATTAAATGACCTTTTAAAGTTAAACTTATCATCGT
TTGAAAAGCTAACAACAAGGATGGCTAATGCaattaaatatgtttttacA
CAGATCACTTCATACTGGCTACCCATTGTTTTTGATGTGTGCGGAGAACC
TCGCAAACCCATTGTTTTGGTGGGCAACAAGTCAGACTGCATGGAAGCAG
AGGGTGACAGAATGAATGAACTACTCAGTATCATGGACCAGTACCCTGAA
GTTGAAACTTGTATTGAGGTTTGTCACTTAGTATACTGAACTCGtagatt
tttctaagcacttttttatgtccGTATATATAccggccaaaatactcaat
ctAACATTGGTTTTTGCTCTTTATGAGCAAATGTAACTAATATAATCTAC
ATATCTAAGATTTTTCGGGAGCTTCGACCTCTGAACACCCACCAGACTCC
CAGCTTCATTAATATACAGCTTTGCTTAGCAAATATTTAGAAACTCAATC
TAAGTTTACAAAAACGGTCTCAGCTctaagtgcttagaaaaatccctgag
aACAATGTAACGTCTGTTGAGTGGGTATTGGATGCGTTCCCCTTGAGAAG
GATTCTTGCCAAGTAGCTCAGTTTTAACATTGAGGAATTTCATGTCTTGC
TATTCaattatttgttgtttttttttcaagcactgAAATGTCCAGAATTA
CTCTTTTTGTGCAAATAAAAGTGAAACtgcaaataaaaaattataagcat
attttgttttgtggaatcttaaaataaaaaaaatttgtttctatcattgt
ttttttattcgtTTTCTAGTGTTCAGCCTATGatttgaagaatatttcag
aGTTATTTTACTATGCGCAAAAAGCAGTTCTACATCCGACTGCACCTCTA
TACTCACACGACGAACAAATGgtatgttttacttttttttgcccGTTGTC
AGAACACGAACGGTTGggcttgaatttaaaaattcttggtttgccgtcac
ccgatcCTAGATTTTGAAGGTGGGTCGGACGGTCCGAAAATTTTTGGTTA
TTCATGGaatttttttctgcattttgtattttttgaagaaaaaaatcgaa
atagcAATAGCAATAAAAGTTTTTAGTTTGGCAAGTTTAGAGAAGAGTCG
GTAGGCTGACGGcaaatcaacattttttaaagCCCAGCCTTGCTAGGGAC
ACAATTTTATATGATTACCTGTTATTTGATCATACCAAATATACTTTCCA
ATGTATTCAAATTCTTCAGTccactttcattttttcagctatcctatacc
gtattacttcgaataaacgccctctTCAAAACGCCCTCCTGTTTTTAAAC
GACcgcctcaaataaacgcccctctttaaatctaaaatttaATGGGCGTT
TATTTCAAGTAATACGGTATGATCAAATTGTTATCAATTATTGTCTCGAA
TTAAATCTCgcataaaaatagaaaagctctattttttggaaaattgagtt
atgaccataccgatgctttacaccccatttttatcgattttttggcttaa
atccatcaaaaaccaacctaaagtggcctaatttttttaagcctatagaa
aaataagaattttcacTTTATTTCCAGGGTAAAAAAGCCTTAGGTCACAT
CAGTTTAGGGcaaaaagccttaagtccagcgtgtaaacacttttttaaca
CAAATATATTTCAAATGTTAATGGTTTGTCAGGATTtaaggaaaaataat
ttaaagtcgattttctcaaaacaacaaaaatggacttaaagcttttttat
tttgatacaacGAAACCgttttcaaaagaattgacTCCTCTAAAGTTCCt
tttttccttaagaaactGTGTACATTTCTCTTTATCTCATcttaaacttt
taaattttagctTACAGAAAAATGTCAAGAAGGCCTTGAAAGAATTTTTA
GGGTAAGATAATTTTGGTTCAATTCATCAGTGTGTCAGATATTGCGATGG
TTTTTGAaacaacccagctggcacaaatGTTGTCATTTGCAGGTTTTATG
GACGTAAAATGGACGTTGTCTTTTTTTTGAAGGCTGGATAAATTTCTCTA
GGCCAATTTTGTTCTGCTTCTGAAAGTTGGTGTAATATGAATTAGCATGA
GGAAAATCTCTTTCtattgacaaaaaatgaaagtaattaaGAAGTCTAAA
GATAGAGGAATGTTTTTATGATTAATTAAATCAAATATTCTTATTATGAT
AATTTTGTTNAAGGAATGTTTTTAATGATTAATTAAATCAGATATTCTTA
TTATGATAATTTTGTTGTCTTTAGATACGCGagcttttttttacttttga
tcgAGCAGTCTAGATAAATTTTGAACCAACTAGTTCCCGCCAATTTGTTT
TCCTATTTGGCTTTTTATGTTGGACTCGAATGTCATTTGAATGTTGACCG
TTGGAAAACTGAGAACTGAAAACACTTAaatggattttatttttgacttt
tatttgttTCAGTTTTCCAAAAGTGGACACACTTTTTAAGGTAGATTCAA
AACACTTGGTTTATGAATTCCTTATAGAAAGTGTGCCCACATTAGGAGAT
ATCTGTGCCTTTTTAGATATGCGATCTTGATAATGATGGAGTACTCAATG
ATACCGAATTGAACGAATTTCAGgttagtcaatttttttagtgttctttg
tttacttttgagTTTTTCCGAACGAGGAAGCGTTAGGAgagaatcaaaat
caaaatggtaTCATTGTGTAGAGTCGCTTTTGTTATTTAACAAGAAGATA
CAGATTAAGATACATTTTTCTATTAGAGTTAAAAGATCTCCCGTCTAAGT
GAATTGTACATAAGAAGGTTTTTCCGtttcaaaattctgcataattcacc
aaaattttaagaatatgtTCTAGTTTGCTTGGttaaatccattttccgtc
tcagacgaaaaaccTCGCTTTGACCACTGCTCTATACACGTATCAGCCAT
ACAGAGGAATTGGGTCGAGGTGGGAAACAAGTGGGAATGACGGCAAATTA
TGTGTCTATTTTAAATAAGATATCTTTAGAATCTTGCAACTTACgtcaaa
aatatgttttgtaaCCATCACCGGGAGACTACTGTACAAAAACCgtgtat
ttattttaaaattaattttccagATATTTTTAACCTATAAAACACAGTTT
AAAGTTTTGTTGATCGATTTTAATTGCTAAAATGTCTCTTTCCTTTCCTT
CAATAGAAACGATGTTTTCGGAATTCACTCCCACCACACGGCTTACAAGA
AGTGAAGAACACCGTTCAAAAACACATGAAAGAAGGTGTCACCGAAGAAG
GAGTCACCATCGAAGGTttggtttgtttgtttgtttgttactTATCGTTG
ACATAAAAACAAATAGTCACTAGGCTAATGCAAGTCAACCTATTTACAAC
tcattcatgatatgcaccactggagagtcttctgagaacttttaaaattt
tccgcCCAATACGACACTTGAACAATAGAAAAGGTGACGTATTGGgtaga
attttttgaaaattcttggaaaactCTCTAGTGTTGCATTTCATGAAGAT
AGTTCTTAAATGAAGCCGTCCATTGATGTACACTTTACATATTCTACACT
GGCATAACGTTGGTTTCCAATGCTTAATTCTGTCTTTAAATTCTTTAAGG
TCATTGAGATGTCGAAGTCTTGTTAATCTTGTTATATCTAAATATATAAA
CTATCAATCTTAAGGTCAAGTTTAAACGGCCAGTTTTCTGACTCACTCAC
ATTTTCTCGGCCGGTAGAAAATCGACTATCGAATATCAATCCGATGCATT
TTTTCGACGTCTGGCTTTGTTTAATCTTtcccaaacaaaaaaatttacac
AGTTACGCTCCGACGAAAagagtggagcgaaaccgtttcggtCTTTTtcg
ctttgtaacgtcttcttttttgacgtttcgaatttttggTGTTCACACAG
CGTTTTCGAACCGTCATCGCAGAAAGTCCAAATTGTTAATGGTTTTTTAG
GGATACAATATTAGGATGTAAATGATAATGTTTGTAAATGCCCTTTCATG
CAGATTTTAGATAACCATCACTAGCTGACGAATGCTTGAAAGAGTAGGGT
GGAAACTTTGATTATTgttcagataaaaaaaatcttttcttaacttttca
aTAATTGTACCGCCCCTCTACCAATGttattgtctgtacacagacccagc
atctacggctaatttcaaaattcgttgtcgtactacgaagcgataaacat
GAGGTACAGAATACCAATGTCGTTAAGTACTCTGTTATTATTAATGTATT
TGTAGCACCTCTCCGAAAcctaacattttcaaattctttttttaaaggat
TCTTGTACCTTCACACGCTATTTATACAAAAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029210XLOC_029210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045702-exon-scaffold_100-1491911889:789326..789484TCONS_00045702-exon-scaffold_100-1491911889:789326..789484Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:789326..789484TCONS_00045702-exon-scaffold_100-1510915933:789326..789484Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:789326..789484TCONS_00045702-exon-scaffold_100-1575043694:789326..789484Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:804372..804422TCONS_00045702-exon-scaffold_100-1491911889:804372..804422Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:804372..804422TCONS_00045702-exon-scaffold_100-1510915933:804372..804422Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:804372..804422TCONS_00045702-exon-scaffold_100-1575043694:804372..804422Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:804631..804689TCONS_00045702-exon-scaffold_100-1491911889:804631..804689Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:804631..804689TCONS_00045702-exon-scaffold_100-1510915933:804631..804689Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:804631..804689TCONS_00045702-exon-scaffold_100-1575043694:804631..804689Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:805080..805161TCONS_00045702-exon-scaffold_100-1491911889:805080..805161Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:805080..805161TCONS_00045702-exon-scaffold_100-1510915933:805080..805161Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:805080..805161TCONS_00045702-exon-scaffold_100-1575043694:805080..805161Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:806098..806141TCONS_00045702-exon-scaffold_100-1491911889:806098..806141Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:806098..806141TCONS_00045702-exon-scaffold_100-1510915933:806098..806141Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:806098..806141TCONS_00045702-exon-scaffold_100-1575043694:806098..806141Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:806447..806500TCONS_00045702-exon-scaffold_100-1491911889:806447..806500Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:806447..806500TCONS_00045702-exon-scaffold_100-1510915933:806447..806500Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:806447..806500TCONS_00045702-exon-scaffold_100-1575043694:806447..806500Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:807129..807293TCONS_00045702-exon-scaffold_100-1491911889:807129..807293Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:807129..807293TCONS_00045702-exon-scaffold_100-1510915933:807129..807293Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:807129..807293TCONS_00045702-exon-scaffold_100-1575043694:807129..807293Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:807845..807946TCONS_00045702-exon-scaffold_100-1491911889:807845..807946Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:807845..807946TCONS_00045702-exon-scaffold_100-1510915933:807845..807946Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:807845..807946TCONS_00045702-exon-scaffold_100-1575043694:807845..807946Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:808936..808977TCONS_00045702-exon-scaffold_100-1491911889:808936..808977Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:808936..808977TCONS_00045702-exon-scaffold_100-1510915933:808936..808977Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:808936..808977TCONS_00045702-exon-scaffold_100-1575043694:808936..808977Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:809642..809698TCONS_00045702-exon-scaffold_100-1491911889:809642..809698Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:809642..809698TCONS_00045702-exon-scaffold_100-1510915933:809642..809698Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:809642..809698TCONS_00045702-exon-scaffold_100-1575043694:809642..809698Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:810282..810390TCONS_00045702-exon-scaffold_100-1491911889:810282..810390Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:810282..810390TCONS_00045702-exon-scaffold_100-1510915933:810282..810390Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:810282..810390TCONS_00045702-exon-scaffold_100-1575043694:810282..810390Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1491911889:811423..811460TCONS_00045702-exon-scaffold_100-1491911889:811423..811460Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1510915933:811423..811460TCONS_00045702-exon-scaffold_100-1510915933:811423..811460Clytia hemisphaericaexon
TCONS_00045702-exon-scaffold_100-1575043694:811423..811460TCONS_00045702-exon-scaffold_100-1575043694:811423..811460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:789326..811460 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7264	8.39924	1.9816	3.51274	2.09533	1.83148e-07	0	0	4.5336	6.80397	3.16436	0.700483	6.33414e-07	0	0.155048	1.41747e-06	2.74924	0.871177	0	2.11271	12.3197	11.0671	10.6422	18.1273	0.55696	0	7.99607	1.40261	14.4691	12.836
Blast
[Close]
BLAST of TCONS_00045702 vs. Swiss-Prot (Human)
Match: MIRO1 (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 9.032e-100
Identity = 157/261 (60.15%), Postives = 204/261 (78.16%), Query Frame = 3 
Query:  180 KGVRILLVGDDGVGKTSLILSLVTEEFPDEVPSRAEEITIPADVTPEKVPTHIVDFSSAEQTEDELRFELEQADVVCVVYACDNDESISRITSYWLPIVFDVC-GEPRKPIVLVGNKSDCMEAEGDRMNELLSIMDQYPEVETCIECSAYDLKNISELFYYAQKAVLHPTAPLYSHDEQMLTEKCQEGLERIFRICDLDNDGVLNDTELNEFQKRCFRNSLPPHGLQEVKNTVQKHMKXXXXXXXXXXXXFLYLHTLFIQK 959
            K VRILLVG+  VGKTSLI+SLV+EEFP+EVP RAEEITIPADVTPE+VPTHIVD+S AEQ++++L  E+ QA+V+C+VYA +N  SI ++TS W+P++ +    + R P++LVGNKSD +E     M  +L IM+QY E+ETC+ECSA +LKNISELFYYAQKAVLHPT PLY  +E+ +   C + L RIF+I D DNDG LND ELN FQ+ CF   L P  L++VKN V+KH+ +GV + G+T++GFL+LHTLFIQ+
Sbjct:    3 KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSS--METILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFLFLHTLFIQR 261
The following BLAST results are available for this feature:
BLAST of TCONS_00045702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIRO19.032e-10060.15Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
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