TCONS_00046142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046142
Unique NameTCONS_00046142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046142 ID=TCONS_00046142|Name=TCONS_00046142|organism=Clytia hemisphaerica|type=transcript|length=1391bp
GTGTAAATAAAGCAGAAAGATTTcgtttttaaaggaaaatgtaTAAATGA
ACGAAGTGAATGACATAAAAATACAATATAAAAATAGTAAGAAGATAATG
CTAATCGTAACGAATTAAACCATGTCCACCAAATACATTGTAAAGTCACC
GAGAAATACATCGTCTTTTCGTTTGGCTTGAATAGTAAGCACTCCTCGAG
GTTTTAAGGTCAAAAGTTTAAAGTGGCAATATTTTTGGTATCCCGCACTT
TATTGGGAGTGGTTCACGTCAAACATATACCCCTCTTAAATTGCCGCTAC
AAAAGCAATCAAGCGTATTCAGTAATGTTGTGTCTTTGAATGATATGGAA
ACTACTTTCAAGCTAGGTGTGCTTTGCCTAGCACTTTGGCAAGTGATACT
TTTTCTCTCGGTAGTTCAGCTATGTCGCGTTCAGCTTTCACTTTTCCATG
TATTTGAATGTAAAGCTCTTTGGTGAGGATGAAGATATCAGGTACGGGTT
CCCAATGTTTAATATCAAACCAAACAGCACCATAAGCTTGGTCTTGAAGG
CTCCCTCCTTCCCCAACATACAGTGGGTTTGGCTGTTCAAGGAGCACTTT
ATAATTCAGAAACCCAGGAATGATGTATTTGTTTTTGGAATCGAtaaact
ttaaaatttgaatCGTTTGATTCCTGATAGTTTCATATTTATCAATTGGA
GAGAAACATTTCTTGATGTTGTGTAAGATGACCGAAACTCCACCGATTTG
CTGGATGGGTGAATCTTCACCAACTCTAGGGTGTGTTCCAAGAAGAAATG
ACTCATAGGAAATCTTGTCTTTCTCGATTTTCCTCAACATCTTGTATTTT
ACCATATACATTGAAACCAACCAAGGAACATGTTTTTTACTGAGATTCAA
TTCCGACAGATCCTCGAAGATATTctcattttttaatttgtcaccGCTTG
GAAGCTCGAATTTAGTGTGGTCATAATAACCATCGTTATGCAACACTTGC
CACCATTTTAAGTAATCATAAGCTTCTTGTGGCTCATCCAGCAAGAACAG
CATACCAGGAATATGTGCCCAACAGCCTGAATGGTCACCTCGGTTAAACA
TGAGAATATCTATCAAATGTTCCAAACACAGCTCTAAAGCTAAACGTGAA
TCATTTTTCTCACCacaaaattgaaagccaatagCTAAATCAAAACGCTC
CTTCAGATAAGGTTGCATCTTAGTTATTCTCCATGATTTACCAGTCGCTT
CGAGTTTGGCCATCTCTTTCTCTACTGACACTATTTTCTTTCTGATATGT
TTACAAGCGACTTTATGCCAGTCCCAATGAGCTTTTTGACATTCTTTGGA
GCAATATTTGACGGCCGTACATCTTGAACATCTGTTTTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_106:298855..306321+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046142 ID=TCONS_00046142|Name=TCONS_00046142|organism=Clytia hemisphaerica|type=transcript|length=7467bp|location=Sequence derived from alignment at scaffold_106:298855..306321+ (Clytia hemisphaerica)
GTGTAAATAAAGCAGAAAGATTTcgtttttaaaggaaaatgtaTAAATGA
ACGAAGTGAATGACATAAAAATACAATATAAAAATAGTAAGAAGATAATG
CTAATCGTAACGAATTAAACCATGTCCACCAAATACATTGTAAAGTCACC
GAGAAATACATCGTCTTTTCGTTTGGCTTGAATAGTAAGCACTCCTCGAG
GTTTTAAGGTCAAAAGTTTAAAGTGGCAATATTTTTGGTATCCCGCACTT
TATTGGGAGTGGTTCACGTCAAACATATACCCCTCTTAAATTGCCGCTAC
AAAAGCAATCAAGCGTATTCAGTAATGTTGTGTCTTTGAATGATATGGAA
ACTACTTTCAAGCTAGGTGTGCTTTGCCTAGCACTTTGGCAAGTGATACT
TTTTCTCTCGGTAGTTCAGCTATGTCGCGTTCAGCTTTCACTTTTCCATG
TATTTGAATGTAAAGCTCTTTGGTGAGGATGAAGATATCAGGTACGGGTT
CCCAATGTTTAATATCAAACCAAACAGCACCATAAGCTTGGTCTTGAAGG
CTCCCTCCTTCCCCAACATACAGTGGGTTTGGCTGTTCAAGGAGCACTTT
ATAATTCAGAAACCCAGGAATGATGTATTTGTTTTTGGAATCGAtaaact
ttaaaatttgaatCGTTTGATTCCTGATAGTTTCATATTTATCAATTGGA
GAGAAACATTTCTTGATGTTGTGTAAGATGACCGAAACTCCACCGATTTG
CTGGATGGGTGAATCTTCACCAACTCTAGGGTGTGTTCCAAGAAGAAATG
ACTCATAGGAAATCTTGTCTTTCTCGATTTTCCTCAACATCTTGTATTTT
ACCATATACATTGAAACCAACCAAGGAACATGTTTTTTACTGAGATTCAA
TTCCGACAGATCCTCGAAGATATTctcattttttaatttgtcaccGCTTG
GAAGCTCGAATTTAGTGTGGTCATAATAACCATCGTTATGCAACACTTGC
CACCATTTTAAGTAATCATAAGCTTCTTGTGGCTCATCCAGCAAGAACAG
CATACCAGGAATATGTGCCCAACAGCCTGAATGGTCACCTCGGTTAAACA
TGAGAATATCTATCAAATGTTCCAAACACAGCTCTAAAGCTAAACGTGAA
TCATTTTTCTCACCacaaaattgaaagccaatagCTAAATCAAAACGCTC
CTTCAGATAAGGTTGCATCTTAGTTATTCTCCATGATTTACCAGTCGNTG
TTCCAAACATAGCTCTAAAGCTAAACGTGAATCATTTTTCTCACCacaaa
attgaaagccaatagCTAAATCAAAACGCTCCTTCAGATAAGGTTGCATC
TTAGTTATTCTCCATGATTTACCTCTACCTTCGAGTTTGGCCATCTCTTT
CTCTACTGACACTATTTTCTTTCTGATATGTTTACAAGCGACTTTATGCC
AGTCCCAATGAGCTTTTTGACATTCTTTGGAGCAATATCTGACAGCCGTA
CATCTTGAACATCTATTTTGAGCATCATCTTTTGAACAATTACTGCATTT
GAATGTAGTACTTCTTGGTGATACTTTAATTCTTggcttcattttatttt
tggtcTGGTGAAACAAAAAAAGGACGAAATACAAAGTTTATAAAGCAACT
TTGAACACAATTTTGGCGGAAACTCGAGTCAATACAATCTCTAAAATTTC
ACGAGAATTTAACTAAATTTTCCCGATAGTGGGAAAAACTGAATTTGGCG
GGAAATTAAACTGACGGACTTTGGTCAAATCCAAAACATTTTCTTCCCGT
CAACTaccttcccttaaggtattatttGAATGAGTGTTAGATTGGTCTGT
CGACTTTTATTCGTTTTTACGCCAGATTTTAATTTCAAGTTTATAAAACA
ATGTTTTCGTTTTTAAAAGGAAAGTTACAAATGAATATGAATATAgcact
aaaaataaaatatgaaaatagaaaaaaaagtaatTGTAACAGAAGGAATG
GATCATAAAATCCTGTACCTTAAAATCTGAATactaaccccctggaaaaa
attATATCTAGCTccctggaaaatgaaaatgtcttCATCCCCTCGAAAAA
CTAAAGGACTTATCGTAGATAAACTTGTCTCGATAATTTAACCCCTCGGA
AAAAGACCAACTTTGACCAATACAAACTCCCTGGGAAAGCGAAAATTCGT
CTTGCATAATACCCTTTGGAAATGCTCGTCCGATCCTTGTATGGATATTA
TCAAAAGGTCGAAAAATGTTGTTAGATGGCATTGGTTACTAAAGTCAATG
AAAGTCATCGGAGAAACACTTTGCTTGAACAGCCTTTGTTGGTGATAAGA
AAACCTTTATAAAAATGAGAGCAAACAGTCAAAAAAGACTAGTAGGGCAT
TGGGATATGATATCTAGCCGGTGATACACTTTCTTTAGGTAACTCAGTGA
TATTATATTCCGCCAACGCCGATCCATGTATTTGAGCGTAAAGCTCTTTA
GTGACAATAAAGATGTTAGGAGTGGCTTTCCAATGTtgagcatcaaaata
aacagcGGCATAAGCTTGATCTTGCTGAGTTCCTCGCCCATCATAAAAAG
GGTTTGGTTGTCGAAGAAGCGTATCAGAATTCAACAGCCCAGGAATGATG
TTTCGATTCATCATATCAATCAGTTTTAAAATGTCAAGCATTTGATTCCT
AACAGTGTCATATTTATCAATAGGAGAGAAACATTTCTTGATGTTGTGTA
GGATGACCGAAACTCCACCGATTTGCTGGATGGGAGAATCTTCACCAACT
CTAGGATGTGTTCCAAGGAGAAATGACTCATAGGAAATCTTGTCTTTCTC
GATTTTCTGGAACATCTTGTATTTCACCATATACATTGACACTAGCCATT
GAGGATGCGTTTTTNACATCTTGTATTTCACCATATACATTGAAACTAGC
CATTGAGGATGTGTTTTCCCGAGGTGTAATTTCGACATATCCTCGAAGAT
ATCTTCACCCTTCAAGTTACAATAAGGAAGATCAAGATTGTAGTAATCAT
AACGCTCTTGATGTGAAACTTGCCACCATTTTAAGAAATCGTAAGCTTCT
TCAGGCTCATCAAGCATGAACAGCATTGAAGGGATATGGGCACGAACGCC
TAAATAATCACCTCGGTTTAAAAACAAGATATCCAATAAATGTTCCACAG
CCAATTCTAAAGCTAATCGCGAATTGTTTTTCATACCACATACATGAAAA
GCTGTTGCTAGTTCAAAACGTTGCTGACAATAGAGCTGGGTCTGTTCTAT
TCTCATAAAGTTACCAACCTCCTCTTTGAATAAGTTTTTATTGAAGAAAT
TTCGTAGCGGCGCTGCCTCCTTTTCTAATAATATCATTTTCTTCTTGATA
TCCTTGCAAAGTACTTTATGTTTCACCCAATGATCTTTTTGACACTCTTT
GGAGCAATATTTGACGGCCGTACATCTTGAACATCTGCTTTGAGCCTCAT
TTTTTGAACAATTACTGCATTCAAACGAAGTGCTTCTTGGGGAAACCGTC
GTTtcgcttatttttcttttttctttgtgcattcttagtttttttcctgg
aaagaaaaataaaccgtTCTTTGGTTAGGTTAGGAATAAGTATTAGTCAG
GAAATAGTGTATAGTTAGGAATATGGTTGCTTTGAAAAATAACaactttt
atcatttttttccagaaaaaaaaaatttaagatatttcacatgtattgta
tttataaaaatctaaatctaagTTTAAAACGTAAAATTGGAGGAGATTGG
AGGTTATGAAAATTAACAAGGTAAAATGTATGCCAAATTAAATCTTTTTA
TATTAAGGAAAGAAGACGAGTTTTCACAATGAAGATTTACTTCTAGTCTA
AAATTACCCATAGGGCAACAAACGGTGAACCAGTAAACGGcgagtcgaaa
aaaaaaaaaattctgagaaGTATCTTGGAGAAAAATCTTCTTTGTATCAT
ACATATTTATAGTCCACAAATATTGTAGGTATATATAGACATTAGAAGAA
GACCAGACAGTgggtttgaaaaacaaaaatttaatataCCCTTTTGTCAA
AAGAGCTTTAAGAATCTTAAGAAGCTttaagacttcgatggccaaaatat
taagttaaaaaggttttatttaccaacacttttatcaaaaaattgtggAA
ATAAGAACGCTCTAAGAATatatttaggcttaaaacttaaaaatgttTAG
AATATCTTGGCTTAAAAGATTTTCGACATAGTGACTGGCAAACATAAAAT
GGATTGGAGGCACTTGGAGCCTTGAAATCCTTAAAGCACAGAAGTCAGTC
ATTTAGCCGGGTACTGTAGAAAAATGCTTCAAAATAAAAACTATGTACAT
TTTAAACTATATACATCTAAAAATATAAATATATCATATGTAGGTTCTAA
AATAAACTTTTTCTTTTGTATAAAATAAAAATATGAACACAATGCTGATA
CGGCAAAAAATATCCCAGGTCTAAGTATCTTAATGAAACGCATCCATTTC
TGGAATGATACTGATAAAATTCTGAAAATAATCCTTCGATAATTTGATAA
CAATTTATTTTGGTTTCAGGAAAAGGGAAGGTGTAAAAGCGATACCCTAC
TCTATGGTCCCGAATAGTAGGTGGTTCAAAACAAAAGGGGTTCGAATTTT
TTTTCAATTTAACAAGCAGAGGGTCCGAATAAACAGGGGGGGGGAGTTGG
TAGACTGAAAAAAATTCTAATTTTTGCTTTTATCTAATTTTATGAACTTT
CAAGCGGTTCCTACTGATAAAATGGAAATCAAACATGGGATAACAAATTC
GGACGTTCGAAAATTATTACACTTTAACTGAAAATGAGAAAACTAGAAAA
TTAATAAATCAATGAACGGGACGGGGGTCTCTTAAAACGAGAGGGGGTCC
CTTAAAACGAGAGGGGGTCCCTTAAAAGAACAGTTGGGTCCTAAAAGGAA
CGGGTTACGATCTGAAAACCATTGAAAGTTAATAAATGGGGTATGTTTAT
TCGGGACCTAAGAGTAGGGGACTTAGGAATCTATAAGACAATTGGAAGTT
GAAACAATGTAGGGCAAAGCCAATAACATAGGTCAGAGGGGCAAGAAAAA
TGACAAAGAATAGAAACTCATTTAGCCTCGTTAAAGAATCTTCAGAACAC
AAGAAATCGATATATAATATGAATCTTAAGAAAGTCGAGTGAACCCTTGC
CTTAGAAAATAAGAACCCTGTANATGTACATTTTAAACTATATAcatcta
aaaatataaatatatcaTATGTAGGTtctaaaataaactttttcttttgt
ataaaataaaaatatgaacaCAATGCTGATACGGCAAAAAATATCCCAGG
TCTAAGTATCTTAATGAAACGCATCCATTTCTGGAATGATACTgataaaa
ttctgaaaataatcCTTCGATAATTTGATAACAATTTATTTTGGTTTCAG
GAAAAGGGAAGGTGTAAAAGCGATACCCTACTATATGGTCCCGAATAGTA
GGTGGTTCAAAACAAAAGGGgttcgaattttttttcaatttaacaaGCAG
AGGGTccgaataaacaggggggggggagttggtagactgaaaaaaattct
aatttttgcTTTTATCTAATTTTATGAACTTTTAAGCGGTTCCTACTGAT
AAAATGGAAATCAAACATGGGATAACAAATTCGGACGTTCGAAAATTATT
ACACTTTAactgaaaatgagaaaactaGAAAATTAATTAATCAATGAACG
GGACGGGGGTCTCTTAAAACGAGAGGGGGTCCCTTAAAAGAACAGTTGGG
TCCTAAAAGGAACGGGTTACGATCTGAAAACCATTGAAAGTTAATAAATG
GGGTATGTTTATTCGGGACCTAAGAGTAGGGGACTTAGGAATCTATAAGA
CAATTGGAAGTTGAAACAATGTAGGGCAAAGCCAATAACATAGGTCAGAG
GGGCAAGAAAAATGACAAAGAATAGAAACTCATTTAGCCTCGTTAAAGAA
TCTTCAGAACACAAGAAATCGATATATAATATGAATCTTAAGAAAGTCGA
GTGAACCCTTGCCTTAGAAAATAAGAACCCTGTAAGAAAACACaagaaaa
tacaaacaaaacaaaagtaacaaaatgaaaattttaaaacacaaaattCT
AAAACATTATAAATATCAGCCAATTTGCTTTCAAAGTTAAAAGTTCTCAG
TTTTCGTCGTCAagaaacaagttttttttaaatgtttttcttcacTACAG
ATAAATTTGAATCCTATACCGAGAGCATAATATATCAATTCTCCATGGCA
ACAAAGTACAAGGTTACTCTTCATGGTCACCCATATCCTCCTCGTCACTG
CTTTCATCATCAGAGCAACCACACTGGCAACACGCTCATCAAAGGAAGCT
CCTTGATATTCTTCAGGGCTTGTCGCTTACCATGCATACCCATATAAAGt
ttcttcaaaaagtataaaacaTTAGGTGTTGCTTTCCAGTTCAAATGTTC
GTAATCTACAATGTTCCAAGCCTCGTTTTGAGTACCAGCAGCAACATATT
GAGGCGTTTGTTGCCCCAGCAGCACGGACGAATTAAGTAAACCAGGAATG
ATGAACTTGTTGACTTTATCAATGTGTTTGCCTAAGGCAACCAATTGAAT
CGCTAAGGTTTGGATCTTCTTGTCCATGCCAGGGGAAATAGCTTCTTTGA
TGTGCTCAAGAGCCAGCCAAACACCATTCAGCTTCAACACAGGCGAATCT
TCACCTAACTTAGGATCAGTGCCCAGAAGAAAAGCATCGTAAGATGCTTT
ATCTAGTTTCAACTGTCGTATTAGTTTATATTTGATGAGGAATAGGTCAA
CGTACCTGTGAACATCGGTGTGGTTGGTCAGTTTAAGCTCAGACAACGAT
TCGTACATATCCTCGCCCTTCAGATTGCAATACGGTAGCTTCATGTCATA
ACAACACGAAATGAGATCTCGATCTTGCCACCATTTCAAGAAATCATATG
CTTCTTGAACTTCCCCTAAAATACAAAGTGTCGAGGGAATGTGCAAACGA
ACACCGAGGTTATCTCCACGACACAACCAGATCAAATCCAACATATGTTC
GACAGAAAGCTCTAAAGCCAGTTTCGAGTTATTATTCATGCCACATGAAC
GTAGCTTTAAAGCAAGTCCCAGTCTCTCCTTACAATAGTTTCTTGGTTCA
ACCAATCTCCAGAAAATTCCAATAGCAACTTTGAAAAGACTCCCAGGTAG
AAGGTCTTCAAGTTCATAAAACTGTCGTAAAGTTTCAGCTTCTTTTGCCA
CAATCTTGGTACGTCTTTTGATTTCATTGCAATGAGTTTTGTGTTTCACC
CAATGATCTTTTTGACATTCTTTGGAGCAATATTTGACGGCCGTACATCT
TGAACATCTGTTTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029477XLOC_029477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046142-exon-scaffold_106-1491911889:298855..300101TCONS_00046142-exon-scaffold_106-1491911889:298855..300101Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1510915933:298855..300101TCONS_00046142-exon-scaffold_106-1510915933:298855..300101Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1575043694:298855..300101TCONS_00046142-exon-scaffold_106-1575043694:298855..300101Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1491911889:300233..300325TCONS_00046142-exon-scaffold_106-1491911889:300233..300325Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1510915933:300233..300325TCONS_00046142-exon-scaffold_106-1510915933:300233..300325Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1575043694:300233..300325TCONS_00046142-exon-scaffold_106-1575043694:300233..300325Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1491911889:306271..306321TCONS_00046142-exon-scaffold_106-1491911889:306271..306321Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1510915933:306271..306321TCONS_00046142-exon-scaffold_106-1510915933:306271..306321Clytia hemisphaericaexon
TCONS_00046142-exon-scaffold_106-1575043694:306271..306321TCONS_00046142-exon-scaffold_106-1575043694:306271..306321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:298855..306321 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0433382	0.0798058	0	0	1.85858	1.89686	1.12281	1.13657	1.0084	0.840555	0.737102	0.758854	1.07807	1.69835	0.190818	0.402081	0.39857	0.336454	0	0.0526551	0.241761	0.216927	0	0.187568	3.82257	7.46558	0.147618	0.175693	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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