TCONS_00046297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046297
Unique NameTCONS_00046297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046297 ID=TCONS_00046297|Name=TCONS_00046297|organism=Clytia hemisphaerica|type=transcript|length=913bp
TGACCACGCAGCGAGTTATTGTGGAAAGCGATGTTGGAGCCAACCAGAAC
ATCTATAGATTTTGACCAACCAGAATACTTTTCATCTCAAGCCACCAACC
AGAAACCATCACTACCCAGTTCCTAGAAGTTCCTCAAAACAAAGTTTAAA
TACAAACACAAATGGGTGATCCCGTCAGTTATGGTGCACATCAGTCCAAT
TCAGAAGCTGGCCAATTGTTGGCAACCTACTGGCCACGTGTCATGGCTGA
TATCCGGACCAAACCATTTTTGCAGAAAACTGGAAAGAAAGATGAACCAA
TTCAAGAACTTCCGCTTGCAAGAATCaagaaaataatgaaacaaGATGGT
GATGTGAAGATGATAAGTGCTGAGGCTCCCATACTATTTGCCAAAGCTGC
AGAGATTTTTATCAGCGAATTATCTTTGCGTGCTTGGATTCATACAGAAG
ATAATAAGAGAAGAACTTTACAGAGAAATGATATAGCGATGGCAATAACA
AAATAtgatcaatttgattttttaattgataTTGTTCCAAGAGATGAACT
GAAACCTGCAAAGCGACAAGAAGAAGTTGTCCGTCAACCTCCGAACGTGA
TGGCACCAGAGCAAGTCCAATACTATTTCCATTTATCACAACTTCAATCA
AATGCAGCAGCTGCAGCAGGGACTACCAACTCATCTGCAACTCCTGTTCA
AGCAACCGCCAACACGCCACAAATCACCCATTTACCACCAGGCGCACATG
TAATCCAACAGAACGGTCAATTCATTATTGCCACACCTCAACAATTAAGT
GGTCTACAATCAACCGGTGCAACTCCAGCACAAACTGCCAACGTAAGCTC
ATCACAATAGTATGGTAGAGTTCATTCCATTCATAGTTTTCTTTTGATGC
GCTTAAAatgtca
Run BLAST on NCBI

transcript from alignment at scaffold_108:385479..395648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046297 ID=TCONS_00046297|Name=TCONS_00046297|organism=Clytia hemisphaerica|type=transcript|length=10170bp|location=Sequence derived from alignment at scaffold_108:385479..395648- (Clytia hemisphaerica)
TGACCACGCAGCGAGTTATTGTGGAAAGCGATGTTGGAGCCAACCAGAAC
ATCTATAGATTTTGACCAACCAGAATACTTTTCATCTCAAGCCACCAACC
AGAAACCATCACTACCCAGTTCCTAGAAGTTCCTCAAAACAAAGGTAAAT
GAAAGTATAATTTTTTAAATGTGCAACCATAAAAAGCAAATCTTATCCTT
CAGCTATATCCTAAGGTTTGGTCCTTTTTTACGAAATTTTATGAAAAACT
TGATCACCACTGTGATCACTGTGGAGTCAGAGAGGCATTAGGCTATTCCA
TTTTTAATCCATAATCATAAAGGAGTATTCACAAACTTTTCCAGGCGGTC
TTACTTAATCCCAGATTTTCCAATGGGTTTTAATTGTTTTTGAATATTTC
CAAGGGCAGGGGGTTATTGAATTTTTTCCAGGGTATCAGAGGAGCTTAAA
GAAAGTTTTCCAGGACCTATATTTGAGGAATTCGATGAAAAACCCATAAA
TTACTTTCCAGGGGGCTCGTGCAGCCAGGGATTATACTCTAGTTGTTACA
AGATATACTCTACAGGACAGGATTAAAAGATTGGTCAGAATCACTGATTG
AAAACAGGTTTTTTTCCTCTCTGACCTCCCCAATAATGGGCCATTCCAGT
TTTTATTCGTTACCCCCCAATGGACGACATGGAATTTCCGTAGCAAATTG
CTTTCAAGAAAGTCCGGAATTTCCGTAACAAATTTTCAAAATACCTATCA
AAACAGTGGAATTCCGTTACTGTAACCTAAAAAAATCATGGAATTCCAAT
ACTTTAATGCAACATTAAGTAAAATTCATGGAATTCCGATACTTTCTCTT
TAAAGTTTGCCTGGAATTCCGTGCCAAAATTTATTTCAAAAATTGATGTC
ATCCATTAGGGGGTAATTTTTTTTTTCTGGAATGGCCCAATCTGTCCGGC
TCTAAAGAAGGGTGTTGGAATTAGACGAGGGATGTCGACATTAGACCAAC
TTACGGTATTTAAGAGAAGTTCTCTTCATTAGGAGATATCTTTATATACC
TTAGTTAGGAGATTTTTTTACCATGCTGATTTTTGACCTTACAATGGGCA
GTTAGTGAAGCCCCCCCCTGCCAGCCCCCAGCGGACTCTCAATTCACGCA
ATCACGCAATTTTTTTTTGAAATTCACGCATTCACGCAAATTTTCCTCGA
GTTTCATGCAATAACTCAATTTTTCAGAAAATCGGGGAAACATTGGAAAA
TCGGGGACACTGCACACCATCAGTGGAAAAAAAACTAAAATTCACGTATT
CACGCACAAAATGGCCCAGATTCACGCATTCACACAGTCAAAAAGTGGAT
TTTCACGTTCACGCAAGTTTTTTCAATTCACGCATTCACGCATTTTTTTT
TCAATTTTCTCGCATTCACGCATACCGCTGGGGGGGGGGCGTGTTAGTCA
CACTAGGAAATTTTAAACTTTCAGAAAAAACAACATCAGTCATCTACACA
GGATGTATTTGCAACAACAAGGATGAGAGTTACCTGAATCAAGTTCAAGA
TCCCAAGACAATCAATTAAAACGAGACAGCGCTTCGATTTTAAGGCCTTG
TTTATACGCTAAAGTAAAAATAATAACCCACATGTAAATGGGTCATTGTT
GAGGTCCGGCAAAATTTCCAGGAAACAGCCTACCCAATGGTGCGCGGATC
TAGGTGGGTTCCCTTAGATCTTTTTCTTGGGAAGTTGATCTTCAAATTAG
TTTTCAAGGTTGGCTTGACTCAAAGTTTTTCATCTATAGCTCAAATTTTA
GGCAATTTCTCAAAGTTTTTGAAAATGTTAATTTCATTAAAAAGTGCCGG
GTTATTTTTTCATGAATACCTTTAGAAGTTTTGCGCTTTTGCAGCATTAA
TCTTTGGCAAGACGCTAGTGTGACTAGCTGATGGGCTATTCCAAAAAAAA
ATTGTACAGGGGTATTGACAAACTTTTCTCACTAACCCCCCTGGAAATTT
TTGATAACAATTATCCCCTGGAAATTAGGAGTCGACACCCCTGGAAAGTG
AAATTTTGTGAAAAAGGGCCTGGAAAGTGACTATTGATGTCAGTTTCAGT
TTAGGAGGGGAGAACCCCCTGGAAACCTTTAATGGGTCATTTCCCCCTTG
GAAAATCTGAAAATGAACAAAAACCCCTTGGAAAATCAAGGCTCAGACCC
CCCTGGTCTGGTCTGGAAAAGCTCGTCAATACCCCTGTATGGTTTAAAAA
TGGAATAGCCCAATCATCTTGCGGTATACTGCAATTGCGGTATAAATGTC
ACTTTTACATTTTTCATAATATACTGCAATTGCAGATTATTCAAAAAACA
GAATTCAAGATTCAAGGAGAAAACAGGCAATTTTTGTACATAATTGACAA
TATCTTTTTAATACGCACAGGCAAAATATTTTTTCTGTAGATCAGATTCC
TTAATAAAGACAAACTCTCTTCTTTTATGATTATTTACAATGTTTGTTTA
TCTTTGTTGACCAGTGCTATTATAAGCCTTTGTAGGCTAACCACGAATGA
AAACTACTGCAATTGCAGTATACTGCAAATTGAGGGATATCCCTGACTGT
CTATAGATCGTCTCAGTACGTCATTTTCTTCCTTCTGACAAAATTTAGTT
GAAATCTGCTTATATTTAGAAAAAGGTGTTGCGAAAATCATTATCTTTCA
TTTTGATTTGGTTACTTCAGCAGTAATAAGGCTAATTTTGTGTTTTTTTG
ACAATTGAAAGCAAATCTTCCGGTGTTCCGGAGCACAAAAAACAGCACTT
TTTGGGTCCAGAGCGCTGAGAGGGTCCTACCTTAAGGAAATCAGTCAAAT
GTGCCAAATTCTCCTAGTTTAGGTATGGTTCTCTTAAGTAGGAGACTAAA
AATCTCCTAAATAAGGTAATCCTCTATTTGGGTTTTCTCTTATCTAGAGT
ATAATCCTCACCTGTCCTAACTCAATTTCCAGGGGGTTATGCTGATCAAT
TACCCCTACGAACAACTAATATGGATCAAATGGTTGATAGTGTAAAACCC
ACCAAAGTGTTAATGTACTAATCTATAAAAACGTAAGATAATATAGAAAC
AACAGGAGTGTTGATAGTATACCCCAGACAGTCCCAGGTAAATGCCTGGG
ATAGAAAAAACTATTTTTCCCTAGATATGTGACTTGTGCACCACCATGCG
CATCTGTAGAGGCACGCTGGGCGGTCATTCAAATTTACTGCACGATCACC
ATGTACACTGCCCAACCCTTTGAGTACGTTGCGCTGCCAGCACGGCACAT
CACAGTGCCAGAACACTGTGGAATCGTTTGAGTACGTTGCGCTGCCAGCA
TGGCACATCACAGTGCCAGAACATCGTGGAACCGTGTGAGTGCGTTGCTT
CGCCAGTACAGCACATCACAGGCATATTTCTCTAATGTTGCACGAACAAC
ACACCAAGTTCGGGGGCGTCCAAGGCACTAAGTTTCTAAATAAATGTTAA
AATCCCTGGACATTTAACAAGAAATCGCTCGACTGTCTGGAATATCAGCA
TGGTCATATACCCCTGTAAATTGATTACAAATGGAATAGCCCATTGTCAA
CAATGTTATCTCCCCAACCACTCCCTGTATTTATCTTTTGCATAGTCAGG
CAGCTGAGGTCACATAAAAATGAACGGGGTGCAAACAATCTAATAAAACC
ATTTTTAAATTATACAGCCCAGATATCTATCAACTGGACCTATCCAAATA
GTTGTTATGGAGAATGCAACAATCTATTGAATAACAAATAACTCCACATA
CATTATTTTCCCTTAGCAATCGCGTTCTCCTATTCTCTTATTTACATGTC
ATCCTCGTTAACATTTTGGGTCCCAGATGACGTCATATAGGCCCAAGATG
ATAGAATCCAATAACCATTCAAAAGCTCTCAAAAATCAATATAGAAGAAG
ACTTTTAAGAGGATATGTATAATTTCTCAATATAACTCAAGAAAATTGAT
TCTGAAAAAGGGGCAAAATTTCCACATTGTGACGTCATTAGAATTACAAA
CCGTTATTAAAATTTCCAGGTGAAATTTGGAAATTTTATGGTTTTAGGTG
GGAGAAACAAGTTAAGGTGGGGATTAATTTCTTTAGGTGCGATTTTTAGT
GTTTTGGTAAAAGTTAATGTTAGTTTTTTCTTCTTTCCAATTTAATAATA
ATTTCTTCTAAATTTTATATTCTAAATAATTATTTTACTATCTATACTAA
ACTTTTCTCCTTTTTATTACCGGGTGTCTCTGAAAAAACTTCCCCCTGTT
TGATTCAAAATTGCGAAAAAGTGAAAAAATATATTAGCTTGATTTTTTCG
AAATCGTTTAGAGGATGGTTTAACTTAAATTTTGGTATATCAAACTTTAA
AATTGCTTCATTAGACCAAAAGTTATGACAAAAAGAGTAAAAAATCTTTT
TTCAAAAAGAGCGAAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTAGAGGAGGGTTTAACTTAAATTTTGGTATATCAAACTTTAA
AATTGCTTCATTAGACCAAAAGTTATGACAAAAAGAGTAAAAAATCTTTT
TTCAAAAAGAGCAAAAAAAGACGAAAAAACAGGGTATAGTTACAGCTAAT
ATATTTTTTCACTTTTTCGCAATATTGGATCAAACTAGGGGGAAGTATTT
TCAGAGACACCCGGTATTATACTGTAAGAATTTTTGTTTCGTTCCTCAAA
ATAGTATAATTTTTCGTGGGGATAGCATTTTTAGCTGGGATCTGGGAGTT
TGGATTGAGGTTAGGAATTTTAGGGTTAGGTGGGACCTAAATTTTTAGGT
GGGACCTGGAATCCCCTTGCACACTATGTAGTATCTTTTGTACTATGCTG
GTCAGTGCTTGTTAAAACTATGTAGAATGTTTGGGTAATGTTTGGATTGT
AATCGGTAAATATCCAGCAAAATATCAAAATTAATAAAGTTTATCAAAAA
TTCAGCAAGACTAATTTAACATGTTTTTGTTTTCCATCTCAGTTTAAATA
CAAACACAAATGGGTGATCCCGTCAGTTATGGTGCACATCAGGTATTAAC
TTCAGAGTTTTTCATATATCATAGTTGAGTGAATGAAAGTATTTCTAATA
TATTTAGTTTTATCTTAAATGATCGCCAATCAGTTGCAAAAGTTTATATT
TTTATGGAGAGCAAGTACTCCAATGTTAGCAAAAGAAATTCTCTCTGTTC
TTACTTTTGATCATCTTTTGTAACCAATGTTGATTATCTGATCTGATCAA
TTATTTATTTATTATATTTTAGTCCAATTCAGAAGCTGGCCAATTGTTGG
CAACCTACTGGCCACGTGTCATGGCTGATATCCGGACCAAACCATTTTTG
CAGAAAACTGTAAGTTGTATGATTTTATTATTCTATAGTCAAATTCACTT
AAGCAAACTCACCTTTAAAATCATGTCAATATGTCAATTTTTAAGTATTG
TATGTTATATAATATGTCCCAGGGGGCACTCGTTCTGAAAACAACCATAT
ATTCGGCCCAAAAATTGACTTTTAAAATCAGACGCTTACAGTGCAGGAAT
AAGCTACGAAAATTGAAACCCTTACAGTGTGGAAACTGACAAAAAATACA
CCCTTACAGTGCATCATTCTTTTCATCAGACCTTTTCAATGGAACACCTC
CCTTTCAAAAAGGTAATAAGACATATAGGTATCATTCAGTGTGTTACTTC
TTCTTTCGGAATTTATTTTTTGGACCTACCTGGAGGTGCTCTGGAGGTGC
TATAAATTAACCCATGTTCTTAGTTAGTTTGTGCGTTCTTTTATTACAGT
ACCAGATTTTCTCAATATCGATTTTTTGCACAAAAATGTGCATTAATTCA
AATGAGAGACCAGATCCAAAAATGTCCCATAAAAAACTGTTTTTTGGGAT
TATTTTGAGAATTAATCAAAAGTTTTTCCCTCGATGGGTATTAATACTAC
CAACAACTGTCTGTAGAACCAGAAATTGCTGTTTTTTGCATTTCCATAAA
TTTTGCATATTCAAGAATTCACGTAATTATTGTTATTAAACACAATTTTT
TTGTTAATGGGTTAATGATATTTTCAGGGAAAGAAAGATGAACCAATTCA
AGAACTTCCGCTTGCAAGAATCAAGAAAATAATGAAACAAGATGGTGATG
TGAAGATGATAAGTGCTGAGGTATTTGCCAATGTTCTTTTTAATCAGTTC
TTTTAAAGGTTGCAATTCAAATCATGGTTTTCATTTTATCAAAAATTGAC
TGTTTTGCTGCCAACCATATTTTTGTTAACGAAAAAAAACAGCTAAATCT
TTAAAACAGATACCTAGTACTTTGTGTTTTATTTGTTCAAGATATGGCTT
TGACTCGATTAGCAAAATCACTGATGTCTTGCTTTCTTTTTAATAGTGAT
AACAGTTTTCTCTAAAGTTTGCTAGAGTTGTAGTTGTAGTTGCTGTTCTC
CAAATTTTACAAATACCTGCATCCCCTAATGAAAACAAGTATTTTACCAC
TTTTAGGCTCCCATACTATTTGCCAAAGCTGCAGAGATTTTTATCAGCGA
ATTATCTTTGCGTGCTTGGATTCATACAGAAGATAATAAGAGAAGAACTT
TACAGGTATAATATCTATCCTAATCTTATTGGATTTTCGTTTCTTTTTTT
GAATCAATGAGAAACGTGTGCATTAAAATTTTGAAGTGTCTAGAATTTAG
ATAACTTACTGTAGGAATCACTTAACATCTGGAAAAACTGGGTGCTCATA
TCAGTACATCATAAACTCAAAACAGATTTATGTTGTAAACTTCTGCCTAG
CAACCTTTCTTTGCATTTAACGTTTTTCTTTCCTCTTTTTAGAGAAATGA
TATAGCGATGGCAATAACAAAATATGATCAATTTGATTTTTTAATTGATA
TTGTTCCAAGAGATGAACTGAAACCTGCAAAGCGACAAGTAAGCGTNTTT
GTAACCAATGTTGATTATCTGATCTGATCAATTATTTATTTATTATATTT
TAGTCCAATTCAGAAGCTGGCCAATTGTTGGCAACCTACTGGCCAAGTGT
CATGGCTGATATCCGGACCAAACCATTTTTGCAGAAAGCTGTAAGTTGTA
TGATTTTATTATTCTATAGTCAAATTCACTTAAGCAAACTCTCCTTTAAA
ATCATATCAATATGTCAATTTTTAAGTATTGTATGTTATATAATATGTCC
CAGGGGGCACTCGTTCTGAAAACAACCATACATTTGGCCCAAAAATTGAC
TTTTAAAATCAGACACTTACAGTGCAGGAATAAGCTACGAAAATTGACAC
CCTTACAGTGTGGAAACTGACAAAAAATACACCCTTACAGTGCATCATTC
TTTTCATCAGACCTTTTCAATGGAACATCTCCCTTTCAAAAAGGTAATAA
GACATATAGGTATCATTCAGTGTGTTACTTCTTCTTTCGGAATTTATTTT
TTGGACCTACCTGGAGGTGCTCTGGAGGTGCTATAAATTAACCCATGTTC
TTAGTTAGTTTGTGCGTTCTTTTATTACAGTACCAGATTTTCTCAATATC
GATTTTTTGCACAAAAATGTGCATTAATTCAAATGAGAGACCAGATCCAA
AAATGTCCCATAAAAAACTGTTTTTTGGGATTATTTTGAGAATTAATCAA
AAGTTTTTCCCTCGATGGGTATTAATACTACCAACAACTGTCTGTAGAAC
CAGAAATTGCTGTTTTTTGCATTTCCATAAATTTTGCATATTCAAGAATT
CACGTAATTATTGTTATTAAACACAATTTTTTTGTTAATGGGTTAATGAT
ATTTTCAGGGAAAGAAAGATGAACCAATTCAAGAACTTCCGCTTGCAAGA
ATCAAGAAAATAATGAAACAAGATGGTGATGTGAAGATGATAAGTGCTGA
GGTATTTGCCAATGTTCTTTTTAATCAGTTCTTTTAAAGGTTGCAATTCA
AATCATGGTTTTCATTTTATCAAAAATTGACTGTTTTGCTGCCAACCATA
TTTTTGTTAACGAAAAAAAACAGCTAAATCTTTAAAACAGATACCTAGTA
CTTTGTGTTTTATTTGTTCAAGATTTGGCTTTGACTCGATTAGCAAAATC
ACTGATGTCTTGCTTTCTTTTTAATAGTGATAACAGTTTTCTCTAAAGTC
AGTCTTTCCGGGTCCGATTGAGAAAAAAATTTTTTTGGTAGAGTTGTAGT
TGTAGTTGCTGTTCTCCAAATTTTACAAATACCTGCATCCCCTAATGAAA
ACAAGTATTTTTCCACTTTTAGGCTCCCATACTATTTGCCAAGGCCGCAG
AGATTTTTATCAGCGAATTATCTTTGCGTGCTTGGATTCATACAGAAGAT
AATAAGAGAAGAACTTTACAGGTATAATATCTATCCTAATCTTATTGGAT
TTTCGTTTCTTTTTTGAATCAATGAGAAACGTGTGCATTAAAATTTTGAA
GTGTCTAGAATTTAGATAACTTAATGTAGGAATCACTTAACATCTGGAAA
AACTGGGTGCTCATATCAGTACATCATAAACTCAAAACAGATTTATGTTG
TAAACTTCTGCCTAGCAACCTTTCTTTGCATTTAACGTTTTTCTTTCCTC
TTTTTAGAGAAATGATATAGCGATGGCAATAACAAAATATGATCAATTTG
ATTTTTTAATTGATATTGTTCCAAGAGATGAACTGAAACCTGCAAAGCGA
CAAGTAAGCGTNTACCTAGTACTTTGTGTTTTATTTGTTCAAGATATGGC
TTTGACTCGATTAGCAAAATCACTGATGTCTTGCTTTCTTTTTAATAGTG
ATAACAGTTTTCTCTAAAGTTTGCTAGAGTTGTAGTTGTAGTTGCTGTTC
TCCAAATTTTACAAATACCTGCATCCCCTAATGAAAACAAGTATTTTACC
ACTTTTAGGCTCCCATACTATTTGCCAAAGCTGCAGAGATTTTTATCAGC
GAATTATCTTTGCGTGCTTGGATTCATACAGAAGATAATAAGAGAAGAAC
TTTACAGGTATAATATCTATCCTAATCTTATTGGATTTTCGTTTCTTTTT
TGAATCAATGAGAAACGTGTGCATTAAAATTTTGAAGTGTCTAGAATTTA
GATAACTTAATGTAGGAATCACTTAACATCTGGAAAAACTGGGTGCTCAT
ATCAGTACATCATAAACTCAAAACAGATTTATGTTGTAAACTTCTGCCTA
GCAACCTTTCTTTGCATTTAACGTTTTTCTTTCCTCTTTTTAGAGAAATG
ATATAGCGATGGCAATAACAAAATATGATCAATTTGATTTTTTAATTGAT
ATTGTTCCAAGAGATGAACTGAAACCTGCAAAGCGACAAGTAAGCGTCAA
AACCTCCGTCCAGTTTCATTTGGATAATTGTTACCGACTATCAAGTGAAA
ACCTTTCCTTTTCAATATCAGAAAAAATGAAAATAAATTGCTTATAAAAA
ACAGTACCAGATGATATAATAGTGGTTCTTTGGCTTTTCTTCAGTCTGAT
GTTTCATATCAGACATATTTTTATTTTATATCAGGCCGGGTACTTGTGTT
TTATTGTGTTCTTATTTTGTGTCGTGTAAACAAATAAATTGATTTTCTTT
CCTTTCTCTATCTAAAATTGCCCTATTTTGAGTCCAATCATGCATGGCGT
TCTAAATCTAGATTGAGAACGGCATGAGTCCAATCAATAAAAAGAACTTA
TGATCTCAAATTGAAGAATCTTGCAACTAAAAACAAGATTACTTTTTATT
AAAAACAAAACTTTTATCATTAACAGGAAGAAGTTGTCCGTCAACCTCCG
AACGTGATGGCACCAGAGCAAGTCCAATACTATTTCCATTTATCACAACT
TCAATCAAATGCAGCAGCTGCAGCAGGGACTACCAACTCATCTGCAACTC
CTGTTCAAGCAACCGCCAACACGCCACAAATCACCCATTTACCACCAGGC
GCACATGTAATCCAACAGAACGGTCAATTCATTATTGCCACACCTCAACA
ATTAAGTGGTCTACAATCAACCGGTGCAACTCCAGCACAAACTGCCAACG
TAAGCTCATCACAATAGTATGGTAGAGTTCATTCCATTCATAGTTTTCTT
TTGATGCGCTTAAAATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029558XLOC_029558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046297-exon-scaffold_108-1575043694:395505..395648TCONS_00046297-exon-scaffold_108-1575043694:395505..395648Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:390557..390606TCONS_00046297-exon-scaffold_108-1575043694:390557..390606Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:390240..390326TCONS_00046297-exon-scaffold_108-1575043694:390240..390326Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:389429..389521TCONS_00046297-exon-scaffold_108-1575043694:389429..389521Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:388994..389092TCONS_00046297-exon-scaffold_108-1575043694:388994..389092Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:386896..386991TCONS_00046297-exon-scaffold_108-1575043694:386896..386991Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1575043694:385479..385822TCONS_00046297-exon-scaffold_108-1575043694:385479..385822Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:395505..395648TCONS_00046297-exon-scaffold_108-1510915933:395505..395648Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:390557..390606TCONS_00046297-exon-scaffold_108-1510915933:390557..390606Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:390240..390326TCONS_00046297-exon-scaffold_108-1510915933:390240..390326Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:389429..389521TCONS_00046297-exon-scaffold_108-1510915933:389429..389521Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:388994..389092TCONS_00046297-exon-scaffold_108-1510915933:388994..389092Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:386896..386991TCONS_00046297-exon-scaffold_108-1510915933:386896..386991Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1510915933:385479..385822TCONS_00046297-exon-scaffold_108-1510915933:385479..385822Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:395505..395648TCONS_00046297-exon-scaffold_108-1491911889:395505..395648Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:390557..390606TCONS_00046297-exon-scaffold_108-1491911889:390557..390606Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:390240..390326TCONS_00046297-exon-scaffold_108-1491911889:390240..390326Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:389429..389521TCONS_00046297-exon-scaffold_108-1491911889:389429..389521Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:388994..389092TCONS_00046297-exon-scaffold_108-1491911889:388994..389092Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:386896..386991TCONS_00046297-exon-scaffold_108-1491911889:386896..386991Clytia hemisphaericaexon
TCONS_00046297-exon-scaffold_108-1491911889:385479..385822TCONS_00046297-exon-scaffold_108-1491911889:385479..385822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:385479..395648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57885	2.51061	3.84344	1.79299	8.5094	8.74003	6.62241	7.40464	1.44915	2.2102	0.344299	1.64267	1.16586	0.765472	1.15688	1.11645	0.000706287	1.48363	1.96728	0.00115995	2.62726	3.96582	1.18436	2.48879	1.84929	3.12944	0	0.830776	1.11354	2.03593
Blast
[Close]
BLAST of TCONS_00046297 vs. Swiss-Prot (Human)
Match: NFYC (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 4.998e-64
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 3 
Query:  195 SNSEAGQLLATYWPRVMADIRTKPFLQKTGKKDEPIQELPLARIKKIMKQDGDVKMISAEAPILFAKAAEIFISELSLRAWIHTEDNKRRTLQRNDIAMAITKYDQFDFLIDIVPRDELKPAKRQEEVVRQPPNVMAPEQVQYYFHLSQ 641
            S+S+A Q L ++WPRVM +IR          KD  +QELPLARIKKIMK D DVKMISAEAP+LFAKAA+IFI+EL+LRAWIHTEDNKRRTLQRNDIAMAITK+DQFDFLIDIVPRDELKP KRQEE VRQ  +V   E VQYYF L+Q
Sbjct:   11 SSSDAQQSLQSFWPRVMEEIRNLTV------KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEE-VRQ--SVTPAEPVQYYFTLAQ 150
The following BLAST results are available for this feature:
BLAST of TCONS_00046297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYC4.998e-6473.15Nuclear transcription factor Y subunit gamma OS=Ho... [more]
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