TCONS_00046408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046408
Unique NameTCONS_00046408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046408 ID=TCONS_00046408|Name=TCONS_00046408|organism=Clytia hemisphaerica|type=transcript|length=545bp
GACCCAAGACAGCACCTATCCCGAAACCAGACGCATCTGTGAAGAAATCT
AAGTCTTCTGATGTCACTACAGGATCCTGGAAAAAAGCGGTCCCGTTCCA
TCTCGGAGCAAAATCACTCCACCACTTGATGTCTTCAAGAGCAGGTTCGG
AAATTTCCACTATGCCACTAAGCTCTGTCACCGATGTGGAGAGGTCAATC
AACCGCCTCATAAAAGTGCGACCTGGCTTAATGACCTGCAAAAGACAAAG
AACCAATCAACGAGAGCATCTCTCGCTTTGAAGTCTGAGAAGCGTTATTC
CAGCCTTGTAACTTACCTAACAaatcttttaactttttgtctGGTAATCG
ACAACACCTGTTCGGAGTATCTATTTCTatgcctaaaaatgttattgTCT
GACAAGGGCCTTCTTTTTTGTCCTCTGATAGGGGAATGTTCAAACTGTTA
CAAATCCTGTCAAATTGGTTCATTGCTTGTGTACAAATATCTACAGATGA
ACCAGTGAAGAAATAATCATCCAGGTAGTGTAACATGTCTTTAAT
Run BLAST on NCBI

protein sequence of TCONS_00046408-protein

>TCONS_00046408-protein ID=TCONS_00046408-protein|Name=TCONS_00046408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
IKDMLHYLDDYFFTGSSVDICTQAMNQFDRICNSLNIPLSEDKKEGPCQT
ITFLGIEIDTPNRCCRLPDKKLKDLLGKLQGWNNASQTSKREMLSLIGSL
SFAGH
Run BLAST on NCBI

transcript from alignment at scaffold_109:30381..30925

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046408 ID=TCONS_00046408|Name=TCONS_00046408|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_109:30381..30925 (Clytia hemisphaerica)
ATTAAAGACATGTTACACTACCTGGATGATTATTTCTTCACTGGTTCATC
TGTAGATATTTGTACACAAGCAATGAACCAATTTGACAGGATTTGTAACA
GTTTGAACATTCCCCTATCAGAGGACAAAAAAGAAGGCCCTTGTCAGAca
ataacatttttaggcatAGAAATAGATACTCCGAACAGGTGTTGTCGATT
ACCagacaaaaagttaaaagattTGTTAGGTAAGTTACAAGGCTGGAATA
ACGCTTCTCAGACTTCAAAGCGAGAGATGCTCTCGTTGATTGGTTCTTTG
TCTTTTGCAGGTCATTAAGCCAGGTCGCACTTTTATGAGGCGGTTGATTG
ACCTCTCCACATCGGTGACAGAGCTTAGTGGCATAGTGGAAATTTCCGAA
CCTGCTCTTGAAGACATCAAGTGGTGGAGTGATTTTGCTCCGAGATGGAA
CGGGACCGCTTTTTTCCAGGATCCTGTAGTGACATCAGAAGACTTAGATT
TCTTCACAGATGCGTCTGGTTTCGGGATAGGTGCTGTCTTGGGTC

Coding sequence (CDS) from alignment at scaffold_109:30381..30925

>TCONS_00046408 ID=TCONS_00046408|Name=TCONS_00046408|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_109:30381..30925 (Clytia hemisphaerica)
ATTAAAGACATGTTACACTACCTGGATGATTATTTCTTCACTGGTTCATC
TGTAGATATTTGTACACAAGCAATGAACCAATTTGACAGGATTTGTAACA
GTTTGAACATTCCCCTATCAGAGGACAAAAAAGAAGGCCCTTGTCAGAca
ataacatttttaggcatAGAAATAGATACTCCGAACAGGTGTTGTCGATT
ACCagacaaaaagttaaaagattTGTTAGGTAAGTTACAAGGCTGGAATA
ACGCTTCTCAGACTTCAAAGCGAGAGATGCTCTCGTTGATTGGTTCTTTG
TCTTTTGCAGGTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029614XLOC_029614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046408-exon-scaffold_109-1491911889:30381..30925TCONS_00046408-exon-scaffold_109-1491911889:30381..30925Clytia hemisphaericaexon
TCONS_00046408-exon-scaffold_109-1510915933:30381..30925TCONS_00046408-exon-scaffold_109-1510915933:30381..30925Clytia hemisphaericaexon
TCONS_00046408-exon-scaffold_109-1575043694:30381..30925TCONS_00046408-exon-scaffold_109-1575043694:30381..30925Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046408-proteinTCONS_00046408-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:30381..30925 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21913	1.94768	0.381951	0.824102	1.7592	0.770185	1.14612	1.16143	1.43229	0.675525	1.63524	1.10833	1.7098	2.05406	2.12619	1.13333	1.28027	1.83903	1.08674	0	5.28307	3.9448	2.06203	3.98364	2.92095	2.46566	2.13775	1.30921	1.33063	1.79016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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