TCONS_00046567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046567
Unique NameTCONS_00046567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046567 ID=TCONS_00046567|Name=TCONS_00046567|organism=Clytia hemisphaerica|type=transcript|length=372bp
ttgagttttaaaactgaattcaaaatatattttggccGTATAACGGTCAC
AAAAAAGTGCTTGTAATTTTCACTGGATACCATATCAAGTATCGATCAAG
TCGTCGGGGCACAACTAACGTGTCTGCTGaaaataaagatattttagaAA
TTCTCCCATGGCTGCTTGGTTAGCCTCAACCCCGAAAAAGTTACACCAGT
TTCCCAAAATAGCGAAATAAGGCCATTTCAGGGACTGGGGAGATTCACTA
AACTGACACCACAAGTGGTTATTTGTCATAGTAAACCTGTAAACTTGCTA
TTGGGCTCAAATTGTTGAAGCTCGGCACAGGGTTGGTAAGTGCACCATTA
TTACAGTAAATCCGTAGCCGCC
Run BLAST on NCBI

transcript from alignment at scaffold_113:262305..262676

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046567 ID=TCONS_00046567|Name=TCONS_00046567|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_113:262305..262676 (Clytia hemisphaerica)
GGCGGCTACGGATTTACTGTAATAATGGTGCACTTACCAACCCTGTGCCG
AGCTTCAACAATTTGAGCCCAATAGCAAGTTTACAGGTTTACTATGACAA
ATAACCACTTGTGGTGTCAGTTTAGTGAATCTCCCCAGTCCCTGAAATGG
CCTTATTTCGCTATTTTGGGAAACTGGTGTAACTTTTTCGGGGTTGAGGC
TAACCAAGCAGCCATGGGAGAATTtctaaaatatctttattttCAGCAGA
CACGTTAGTTGTGCCCCGACGACTTGATCGATACTTGATATGGTATCCAG
TGAAAATTACAAGCACTTTTTTGTGACCGTTATACggccaaaatatattt
tgaattcagttttaaaactcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029716XLOC_029716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046567-exon-scaffold_113-1491911889:262305..262676TCONS_00046567-exon-scaffold_113-1491911889:262305..262676Clytia hemisphaericaexon
TCONS_00046567-exon-scaffold_113-1510915933:262305..262676TCONS_00046567-exon-scaffold_113-1510915933:262305..262676Clytia hemisphaericaexon
TCONS_00046567-exon-scaffold_113-1575043694:262305..262676TCONS_00046567-exon-scaffold_113-1575043694:262305..262676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:262305..262676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.587039	0.231943	0.559659	1.04789	3.11803	0	0.220514	1.59453	0.434266	1.05231	0.494366	0	0	0	0.231372	0.726342	1.26265	1.53969	0	0	0.934746	0.625679	0.298448	0	0	0.246132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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