TCONS_00046704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046704
Unique NameTCONS_00046704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046704 ID=TCONS_00046704|Name=TCONS_00046704|organism=Clytia hemisphaerica|type=transcript|length=871bp
GAAAAACCCAACATTGTTCGACTGCTTCCTCAAAACCAATGTGATTTTGT
GTTCGAGATCAAAGCTAGTCAACAGACCAGACGACAACAGAGTTTTGAGG
AAATGGCCACGTTGGAACAGAAAATGGAAGAAGTCCAAATAACAAATGAG
AATAATCCTCCTAAAGGTAACAAGAAAGAAGGAAAGAATAATAACAAGAA
AGAAGGGAAGAATAAAAAGGACaaacaaaataaatcaaatgatAAATCTG
GCCACCCAGTTGagATGAACCCTTTACCAGCGTATATTGAAGAAAGACTG
AAGATATTTGATGAAATAAAAGCTGAACATGATGCATCGATGGAAGCCAA
AGAAAAAACGAGCATCAAAATCACACTTCCTGATGGCAAACAGGTCGATG
GATTCTCATGGAAAACAACCCCATATGAAGTGGCACAAGGAATTAGtcaA
GGACTTGCTGACAACTCAGTCGTTGCAAAGGTGAATGGTGTCCTTTGGGA
TTTGGATCGCCCCGTTGAAGAAGACTGCACAATCGAACTCGTGAAATTTG
ATCAACCCGAAGGTCAGCAAGTATTTTGGCATTCCAGTGCTCACATTCTT
GGAGAAGCTATGGAGAGACATTACGGTGGTTGTCTATGTTATGGTCCACC
AATCGAAGAAGGTTTCTATTATGATATGTCCATCGATGATCGCCAAGTCT
CAAGTAATGATTTTTCAGCATTAGAAAGTGTCGTAAAGAAAATTatcaaa
gaaaaacaacaatttgtTCGACTCGAAATGAAGAAAGAAGACCTTTTAAA
AATGTTCGCTTACAATCCTTTTAAACTGCGAATTCTGAATGAACGTGTGA
CCACCCCAACAACTACTGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_116:367133..376163-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046704 ID=TCONS_00046704|Name=TCONS_00046704|organism=Clytia hemisphaerica|type=transcript|length=9031bp|location=Sequence derived from alignment at scaffold_116:367133..376163- (Clytia hemisphaerica)
GAAAAACCCAACATTGTTCGACTGCTTCCTCAAAACCAATGTGATTTTGT
GTTCGAGATCAAAGCTAGTCAACAGACCAGACGACAACAGAGTTTTGAGG
AAATGGCCACGTTGGAACAGAAAATGGAAGAAGTCCAAATAACAAATGAG
AATAATCCTCCTAAAGGTAACAAGAAAGAAGGAAAGAATAATAACAAGAA
AGAAGGGAAGAATAAAAAGGACAAACAAAATAAATCAAATGATAAATCTG
GCCACCCAGTTGAGGTAGAAAATATTTTTAGAATTAATTTTCTTTATGTC
ATACTCTGTCTGTGACCTGTGTTTCTTGCAGGACCCTTCTTTGGGTCCCT
TAGCAATAGACCTTTTTCGCTTTTCCATTCGCCATACCGTAGTTCTAGTT
CTATTAAAGTGATCACATAATACGCTAACGTACATTATCATGATATTGTA
AGTTGATCTAATGTCGACATCTCTCTATCTTCTAATCTTGACACCCTTCC
AGTCAGTGAAAATACCTCCATTTTAAGCATGGCATGGTAAAAGTTCACAA
TAACGACTTTCTTTTTACTACAAAACCAAACGAATGAGAGCAAGTCATTA
AAACTAAAAGTCAGCGCTCCGTGGTTGTGACGTACCGTGCGTAGAGTCGT
TTAATATCGACATGCGTCTTGTTATTTCGACATATAGCTGTAGGCTGGTC
TTCGAAATAAAAAATCAAACATAAACAAATACATACCAAAGTTATCAATC
AATCACTAAATTGTACTCTCCCTATCACGTCACAGATTGTTGAAATGTAA
GAAACGTGAAGTGGGTTTTTTTCGAAAAGAAATTTTTAACGATGTAGTCA
CTAAAAACTTATACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGC
GTATATTAGCGAGTCAGGAAAATAGTGATTTTTTTTGGATTTATTTTAGC
GAATCAAGATTTCAAAAAATTTCGTGTGGACAAATTTTAGCGAATACTCG
TCTGACAAAAATTTCGCCTGGATTAATTTTAGCGAGGGAAATGATTTTGA
AGAAAATATTAATGTTTTTTAATACAAAAATCAATGCAGTCACATGTCTT
TATAAGTATAACACATTTTTTGACTGAAAACGGAAAAGCTTGAAATTTAT
ACCCCCCATTACTAGTTTTTGAAAAAATTATGAAAATGATAAAAAATGAT
ATAAAATGAAAGAAAAAACATACTGGATTTATTTTAGCAAATCAGCCTTT
CGAAAAATTTTGCGCGGATAAATTTTAGCGATCTGTCGATTCTGTGTGTT
TTGGCGAGATTTATTTTAGCGAAAAGAGGGAAAACTCTAAAACGCTAAAA
TTAGTCTCGAATTACAAAGATTAAAAAGACAACAAAATCATCTTATAAAG
AAGTATTATAATCATTAGAACAACTAGCCGGTACCAAGCATCGCACGCGG
GTTAAGCTGTAGCTGAACGCACTAAAAGTCCTTTGGATGTTGAAGCTGAC
TTAAAAAAACGATCAAATGAATAACAAAATATCTTCAAAGTTTGACTCTA
TAAGATCTTTTTCTCGCTTCGCTCGCATTAAATGCGTCGTCCAGTTTTCG
ACAATTTGAGAAAATGTCATGGTAAAGAGGAGTGAAATGTAGAAATAACA
ATTATTCAGGAAAAAGCAGGAAAGCCACAAAGAATAGCGCAACTTTGTTT
TTATCACATTTAAAAAGATAAATAAGTCAATTCTAAATTGCTTTTTTTAA
AGCCTTGTCATAACTTTTCGAATTTAAACATGTAAAAAAACATTTAAAAT
GACGTACACAGTCAGTTTTTGAGAAAATGTCAAAAATGTTTTTATATGAA
GAAAGAGATGGACTAATTTCTTCTCTTGCTCTTTATCGCCCTTTAATANG
TTTTTATATGAAGAAAGAGATGGACTAATTTCTTCGATCTTGCTTTTTAT
CGCCCTTTGAATGCTGTTATTGTTCGACAAACTTTTTAATATTTATGTTT
TGATTTACATTTGAAATGTTCTTTTCTATAAAAGAAACTTGTTTTGTTTT
GAAAAGAATTCAAATGTCATTAATAAATAGATCGTTAAATACATTGGAAA
ACATTTTAAACAAAAGAAAAGAGAAAAACAGGATCGGGCATAGCTAGGCA
GAAATTAAAATCACTAAATAAAGATGGGCCTTAAATTTCAAAACAAAGGC
TGAATAAAGTCTGAACCAGGCTCTATCCGATCTGTCAATCAAAACAAACT
TATCGAGAACAAAACATTGCTTGCGAAATCGAAGGTGACACACAGACAGA
AAACAGACATACAGACTACGGCTATTAATATATAGATAAAAGATGGAATT
TCTTAATCCAAAAAGAAATATTTTACAGAACTGTACAGAACAACAAAAGC
CTTCTAGAGATTTGTTCTTAAAGACATTGCATATTCTGTTTTCATACCAT
TAAAAAATTCCACTAAGACGGAGTACACACATCAATCTTTCAAAACACGC
AAACTGAAAGCAGTAATTATGACGTCACGCATTCAGCAGGTTCAGTTCAG
ATCAGATTGATCATTTGGCAGGTCTATTCCCAGGAGAATAGTTTACCGTC
AGCCGAATAAGGATTGTTTTTGTACCTTCGCGGGTAATTTTTCAGCTTGA
GTTTATAATACACAAATACACCATTTCTCTTTCGCACCGAGTAGGCTTTT
AAATCGGACATATGAAAAAAAATCCGTAGTGGAACACACGCAAATGTCTG
GAAATATTTACAGAACAACAAAAGCCTTTTAGAAATCTGTTCTTAAAGAC
ATATCGTTAACTGCTCTAACTTGGGACGATTGGTAGAAACATGGGACTGT
TGATATCTGGCCTGTATTAGGGGTAGGGGGTAAAAGTCGGTATCTTCAGA
TCTTCTTCGCCTGGTGTTTTTTCTGTTCCATATAATGATAGAAGACATTT
AAAAAAAAAAAAAATTAATTTTATGCATTTTTGACGAATTCCAGCCCAAA
AAACTGCCCAGGGGGGCTTTTTTACCAAAAAATCAGCTTTTTTGAGGTTT
ATTCTTCATATCTCTTCCAAAACTTGCGCAAATTCAAGATGTAGTGTTTT
TTTATGAAAGTTTAACCTATTGTGATGCATTCTACGCAATTTTTAAGGTC
AGAAGTCCAAAATTGGCTGAACCCCCCTGGGGGTACTGATTCGCACTACA
GGCAAAAATTGGAAAAAATGGCATTTTCTGGCCTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TTGAAAATTGTGCCCGTTGGAGCCCTAAACGAGCTGTTTTAAGCCGATTT
TGGGTAGCAAAATGCTTTTTAAGGCCAATTTTGCAAGTTCATAAACTTAA
ATCTAATTGATTCACACGTCTGAAATTTTCAGAGATGGAAGTCTTCAGTA
AAGTCTTTAAGTGAAATGAATTTCAAGATTTTCACTTTTTTCAAAAAATC
ATAATGGCGTCTTCAAAAATCGCTTTTTAGCAAAAAAAAATCAGATTTAT
CAGAATATAGCATTTTTTAAGGCAAGCTTCTACAAACTGAGTTTAAATAA
TGATTGAAATTTTTTTAGCAGTGATAGTACTCTGGAGATAGTCCAGGGAA
ATCAAAATCATTTGGGTCTGGGATGCGTCTATGTCCCCCATTATGGAAAT
AAAATCCCTGCTAAGAGCCATTTTCAGGCAAAAATCCAAATTTGGACTGA
AAAAATCTCTAAAACGACAATAGACATGGGCCCGAATTTTCTTGCAGTGA
TAGTATTCTGGAAATACTGCAGGAAAATCAAAGTCATCTGAGCTTGGGAT
TTGGGTATATCCACCATTTTGAAATTGAAATTCTTGCTAAAATGCAATAT
TTCAATCAAAAATCCAATTTTTGACTGGAAAAATCTTAAAAATGGCAAAA
GACATGAACCTAAAATCTTTTTGCAGTGATAGTCTTCTGGAAATACTCCA
GGAAAATCAAAATCATTTGGGTTTAGGTGATTTTGATTTCCCTGGAGTAT
TTCCAAAAGACTATCACTGCAAAAAGATTTTAGGTTCATGTCTATTGCCA
TATTAGAGCACTTGTTAAGTCAAAATGGGATTTTTGCTTGAAATGTTGCA
ATTTAGCCAGTTTTAACACAGATTTCAATTCCATAATGGCAGATATACCC
AAATCTTAAACCCAAATGATTTTGATTTTCCTGGAGTATTTCCAGAAGAC
TATCACTGCAAAAAGATTTTAGGATCATGTCTATTGTCATTTTTAAGATA
TTTCCAGTCAAAAATTGGATTTTTGATTGAAATATTGCATTTTGGCAAGA
ATTTCAATTCCAAAATGGTGGATATACCCAAATCCCAAGCCCAGATGACT
TTGATTTTCCTGCAGTATTTCCAGAATACTATCACTGCAAGAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATGGCTCTTAGCAGGGATTTTATTTCCATAATG
GGGGACATAGACGCATCCCAGACCCAAATGATTTTGATTTCCCTGGAGTA
TCTCCAGAATACTATCACTGCAAAAAAAATTTCAATTAGCATTTAAACTC
AGTTTGTAGAAGCTTGCCTTAAAAAATGCTATATTTTGATAAATCTGATT
TTTTTTTGCTAAAAAGCGATTTTTCAAGACGCCATTATGATTTTTTTTTT
AAAGTGAAAATCTTGAAATTCATTTTGCTCAAAGACTTTACTGAAGACTT
CCATCTCTGAAAATTTCAGACGTGTGAATCAATTAGTTTAAAGTTTATGA
ACTTGCAAAATTGGCCTTAAAAAGCATTTTGCTACCCAAAATCGGCTTAA
AACATCTCGTTTAGGGCTCCAACGGGCACAATTTTCAATCCAATATGATT
ATTTTGCTGTTTCTTCTTAAAATTTAGTACAGCAAGTAAAAAAAATAAGA
TTTGCAATAGTTTTGACATATTTACAGGCCTGAAAAGGCCAGAAAATGCC
ATTTTTTTCAATTTTTGCCTGTAGTGCGAATCAGTACCCCCAGGGGGGTT
CGGCCAATTTGGGACTTCTGACCTTAAAAATTGCGCAGAATGCATCACAA
TAGGTTAAATTTTCACAAAAAAACATTACATCTTGAATTTGAGCAAGTTT
TGGAAGAGATATGAAGAATAAACCTCAAAAAAGCTGATTTTTTGGTAAAA
AAGCCCCCCCGGGCAGTTTTTTGGGCTGGAATTCGTCAAAAATGCATAAA
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTAAATGTCTTCTATCATTATATGGAACAGAAAAAACACCA
GGCGAAGAAGATCTGAAGATACCCCCCAAAAAAGTTACTCTACCCCCTAC
CCCTACCTGTATTTTCACCTATTGGAACAAAGAAGACCAAATTAGTGACA
AAACGATGAAACATTTGACGTCACTTGTGCCCGCAAGTTACACACTCGTT
ATTTGTTAATCCCATCGGGCAGTTAGGCGGTGGGCGTTCTCTAATTCTCG
AAGAGTGAAATTAAAAACATTACATGATATTCTTCAGGCAATGGTGGCAA
ACATGCAGTCATAACCTTTTAATGTTTGTTTTAATTGAATTTTGTTCTTT
TTTTAAATAAAAAGATTTTAGTTTTGAATTTGAAAAGAATTAAAATGTCA
TTAATCAAATCAGGTCATGTTCTAGAGTTTAAAAGTGACTTTTGGTAGGA
CAAAAAACCTTAGCTATTTTATGATGAATAAAATAAATCTTAGGACGCTC
TCGTCCTTGGTTCTATTGGTTGACCCAGCTTTGATTTTGTCCATGGTCAT
ACATTTAGTCCATGAATGAAAAGAAATATTTTGTCAATTTAACTTAGCCT
AAGTACGCTATCTTACATTGCAATTTGATTGACGATTCTACTGTACTGTC
TTCCCTCTCAATATGCATACTCAGGAACTCACATGCTGGTACTTACGTCC
TGAATTGTATAATATATTTGTATTTCCAGATCCATTTTCAAAATGTACCA
GTTTGAACTTTCAATAGTTGATATCCTAGACTCTGACTGCCATTGTGTGT
GTTCTTTAACTAATTTTTATTGAAAAAGTTATCAAAAAGNTCCTAGACTC
TGACTGCCATTGTGTGTGTTCTTTAACTAATTGAAAAAGTTATCAAAAAC
TATCATTTCCTTGTTAGATGAACCCTTTACCAGCGTATATTGAAGAAAGA
CTGAAGATATTTGATGAAATAAAAGCTGAACATGATGCATCGATGGAAGG
TAATAATTTCAAAGATTTCTTTGATTACCTGTAAGTTGGTATGATACTGT
CTTCTTTCAAATTCTGTTTGGTAGAACAGTTGCTGATGGAAGATCTGAGA
AGATAGATTTTGACCTTTTGTCCTTCCTACAGCTGAGAAAGGGTACCAAA
ATTAACTAGTAGAGGGTAGAAAAACTAACATTTTGTACAACACAAATTAC
TGCTATATGAAAATGTAATCATTGCTTATCTAGAGTGACAATTGTACATG
GATTTAATGTTTTGGCTCTTATTGTAATGTAATAGTTAATTTTTCATGTT
GACGAAAAGGTAGCAACAAAGGCTAATAAAATTCAACGCTACTTTACAAT
TAAAGAAACAAAAAAAACAGAGCTTAACAGTTATGAAGTATCATATTTTC
CACTATGTACTGTGCTGGATTTGTTGTTTAGCCGTCACCCGGCCCTAGAT
TTTAGTTGTGGGTGGGTGGGTTGGTCTTTGACATGAAAATAGAAGAACGA
GAAGGTAGAAACTTAAAGATAGAATACATATAGATAGAATACATATAGAT
GCAATCTGAGTTTAAAATGGCAATAACTCAGGTTTGCGGTAAGTTTTGAG
GTAAGATCTGCCAAGTGACGACAAAGCATTAAAGTCTAGCCTAAATCAAA
GGTTATAAACTGTGGAGACTGTGAGTTTTAATACATCATGAGTTTTAAGG
ATCATTTTTATTAAATTTCATAGCCAAAGAAAAAACGAGCATCAAAATCA
CACTTCCTGATGGCAAACAGGTCGATGGATTCTCATGGAAAACAACCCCA
TATGAAGTGGCACAAGGAATTAGGTAAAACTATTTTTTCTCTGTTTATTT
AAATTCTTAACGTCTTTATGCGGCTTTCATTATCATCCTTATCATCTGGG
TTTGCCAGGGCTATATACGTGCTGCTCTGTTTCTTGTGAAAAGACTTGTC
TGAGACTTCAGATACACAAAATTGAAAGATTATAAAATCTTTTTTCTTTT
CAGTCAAGGACTTGCTGACAACTCAGTCGTTGCAAAGGTAGGATTTATTA
TAGCAACGTACACTAACATCCACTGACCATAATATTTTATTCAGAACTTT
TTCTATCAGTCTTCTGAAAATCTCACTACTCTCTGATAAACTCTACTGAT
AGGGGCTCAGAATAGTAACATTCAAGGTGGGAAGTTTAAAAAAATGACAA
ATACAGAAGAATGATTGCAAAAGAATTTGGAAATTCCCTAGTGAGAAATT
TTTCCAAAAATTAATTAGCAGAGACACAGATGACAAGGATAAGAATATAA
TAATAACTTCTTTATTTTTGGAGAATTTCTTGCCCACTTGACTTTGTATA
TAATTCCTAATATTTTATTGGACAATATTCTTATGAAATTTCTAATTTCT
CTTTTCTAGGTGAATGGTGTCCTTTGGGATTTGGATCGCCCCGTTGAAGA
AGACTGCACAATCGAACTCGTGAAATTTGATCAACCCGAAGGTCTGCAAC
AAATGAATTTATAAAAAACTGGTTTCTTTTTGTTTGACACTTTGAATATG
AACTATATTATAGTCCATCATTGCCTGATGTAGTTGTCCAAGTTTTGATA
CTTCCTAAAAGAAATGAGCTCTGACAACTCATAATTATTATATCACTATT
AATCATCCATATATTGGTCATTTTTATTCTTTCTTTTTGTTTTGAAACTT
TAGGTCAGCAAGTATTTTGGCATTCCAGTGCTCACATTCTTGGAGAAGCT
ATGGAGAGACATTACGGTGGTTGTCTATGTTATGGTCCACCAATCGAAGA
AGGTTTCTATTATGATATGTCCATCGATGATCGCCAAGTCTCAAGTAATG
ATTTTTCAGCATTAGAAAGTGTCGTAAAGAAAATTATCAAAGAAAAACAA
CAATTTGTTCGACTCGAAATGAAGAAAGAAGACCTTTTAAAAATGTTCGC
TGTAAGTTGACATCTATTGATTGGAACTAAGAGTTATGTGTGTCATTGAG
TTTGACCATAAGTAAACTTGCTTTTTGTCCCTAAAATCTCGACAGTGAAA
GTGTCTCAATTAGCCTTCGATTGGAAAATATGTATATAATGTAATGTAAC
CTCTTTGGTACTAATCCCAACAATAAATGTGTCTCACCTAGCCTTTTGAC
AGAAATTTTCTATGTTTTTATAAAGATTTCTGAACAAAATAAATTGTGAT
TCAGAAGTCTGACATTTTATCATAGACATCCATCCTTTTAATAATCTAGT
CTATTTATCACTTTTTTTAGTACAATCCTTTTAAACTGCGAATTCTGAAT
GAACGTGTGACCACCCCAACAACTACTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029798XLOC_029798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046704-exon-scaffold_116-1575043694:375900..376163TCONS_00046704-exon-scaffold_116-1575043694:375900..376163Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:369465..369546TCONS_00046704-exon-scaffold_116-1575043694:369465..369546Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:368641..368740TCONS_00046704-exon-scaffold_116-1575043694:368641..368740Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:368427..368460TCONS_00046704-exon-scaffold_116-1575043694:368427..368460Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:367973..368054TCONS_00046704-exon-scaffold_116-1575043694:367973..368054Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:367513..367760TCONS_00046704-exon-scaffold_116-1575043694:367513..367760Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1575043694:367133..367193TCONS_00046704-exon-scaffold_116-1575043694:367133..367193Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:375900..376163TCONS_00046704-exon-scaffold_116-1510915933:375900..376163Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:369465..369546TCONS_00046704-exon-scaffold_116-1510915933:369465..369546Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:368641..368740TCONS_00046704-exon-scaffold_116-1510915933:368641..368740Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:368427..368460TCONS_00046704-exon-scaffold_116-1510915933:368427..368460Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:367973..368054TCONS_00046704-exon-scaffold_116-1510915933:367973..368054Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:367513..367760TCONS_00046704-exon-scaffold_116-1510915933:367513..367760Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1510915933:367133..367193TCONS_00046704-exon-scaffold_116-1510915933:367133..367193Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:375900..376163TCONS_00046704-exon-scaffold_116-1491911889:375900..376163Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:369465..369546TCONS_00046704-exon-scaffold_116-1491911889:369465..369546Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:368641..368740TCONS_00046704-exon-scaffold_116-1491911889:368641..368740Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:368427..368460TCONS_00046704-exon-scaffold_116-1491911889:368427..368460Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:367973..368054TCONS_00046704-exon-scaffold_116-1491911889:367973..368054Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:367513..367760TCONS_00046704-exon-scaffold_116-1491911889:367513..367760Clytia hemisphaericaexon
TCONS_00046704-exon-scaffold_116-1491911889:367133..367193TCONS_00046704-exon-scaffold_116-1491911889:367133..367193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:367133..376163 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.2348	78.5842	55.5064	54.8003	104.571	84.0188	115.33	127.837	73.2761	101.38	61.8865	64.3642	49.9746	49.4649	53.1639	63.1409	57.7436	52.7354	17.2219	34.7839	34.8356	36.9932	47.8611	50.2448	48.732	51.2215	42.2531	25.8531	58.253	44.4193
Blast
[Close]
BLAST of TCONS_00046704 vs. Swiss-Prot (Human)
Match: SYTC (Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 1.342e-96
Identity = 144/207 (69.57%), Postives = 172/207 (83.09%), Query Frame = 1 
Query:  259 VEMNPLPAYIEERLKIFDEIKAEHDASM-EAKEKTS--IKITLPDGKQVDGFSWKTTPYEVAQGISQGLADNSVVAKVNGVLWDLDRPVEEDCTIELVKFDQPEGQQVFWHSSAHILGEAMERHYGGCLCYGPPIEEGFYYDMSIDDRQVSSNDFSALESVVKKIIKEKQQFVRLEMKKEDLLKMFAYNPFKLRILNERVTTPTTTV 870
             E+NP P YI  RL++++ +KAEHD+ + E  EK S  IK+TLPDGKQVD  SWKTTPY++A GISQGLADN+V+AKVN V+WDLDRP+EEDCT+EL+KF+  E Q V+WHSSAHI+GEAMER YGGCLCYGPPIE GFYYDM +++  VSSNDFS+LE++ KKIIKEKQ F RLE+KKE LL MF YN FK RILNE+V TPTTTV
Sbjct:   45 AELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTV 251
The following BLAST results are available for this feature:
BLAST of TCONS_00046704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYTC1.342e-9669.57Threonine--tRNA ligase, cytoplasmic OS=Homo sapien... [more]
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