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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046787 ID=TCONS_00046787|Name=TCONS_00046787|organism=Clytia hemisphaerica|type=transcript|length=1852bp
TAACATGTCAAAGGTGATTGATAAAATCGTCAAAGAGTTTAAATCATGGA
CTTGGCATCACTTGTTTGTCTTCGTGTTAACTTTCATGGCATATGCGGCT
TTCCACGGCTGCCGAAAGTCGTTTAGTAACATCAAGGATGAGTTAGCAGA
AAACTTTACTCCCAATACTACTTATTTCCCATATGATACTTGGCAGAAAG
AAACTACCTTCGCGAACAAGGATGACGCTGATGTTTTCTTAGGTGAATTa
gattctttgtttttgttcgCCTACGCTTTTGGTTTATTCGTCAATGGTGC
GTTAGGCGACCGCCTGAATCTACGATATTTCCTCGCCTTCGGCATGTGTG
GTTCAGCTAtcgtcactttcattttcggtTATCTTGGAGCAGCTTACCAC
GTCCGAAAAACCATTTTTTATCAGATTCTACAGTTCTTCAATGGTCTGTT
GCAATCGATCGGATGGCCAGCTGTAGTAAGTATTATGGGGAATTGGTTCT
CAAAATCTTCAGCTGGATTTGTGTTCGGGATCTGGTCGGCAAATGCGTCC
GTTGGAAACATTATCGGTTCCGTAGTTCTAGCTCAAGTGTTGAATTATGG
TTACGAATATGGTATGTTGTTGAATTCTTTAATTCTTTTTTGTGTCGGtt
tgattgttttgttttgcctCGTTGTCCACCCTAATGAGATCGGCCTCGAA
AACCCCGATCAACAAGAACGCGTCGAAACTTTAGGACAGGAGGATAACGA
TCCTCTACTACCATCAAACAAAGTCGCCGTACAACAACCAAAACCGATCA
GTTTCATCCAAGCTGTTCTAATACCAGGTGTGATCCCGTACTCGTTAGCG
TACGCTTGTCTGAAGTTGGTTAACTATTCGTTCTTCTTTTGGCTACCAAC
TTACCTCTCACAGGGTTTACACTGGAAAGATGACAAGAGCGTCGAATTTT
CAAACTTCTACGACATCGGTGGTATCTTTGGAGGTATTATCGCGGGAATC
GTTAGTGATTGTATCGGAGTTCGATCACCAGTTGTCGGCATCATGTTAGC
GTTTTCCGTCGGTTCAATCCTATGTTTTAATTATTTCTCGGGAGTTTACA
ATGTCACAGTCGCGATCTTATTCATTAATGGTTTTATGATCGGAGGTCCA
GCCAATACAATTAGTACGGCAATCACAGCTGATCTTGGAAAACACGAGAA
AATCATGGGTAATGCTGAAGCTTTGGCAACAGTCACTGGCATCGTAGACG
GGACTGGCTCTGTCGGCGCTGCCATTGGCCAGTACCTTGTTGGGGTTATT
AATAAGAAAGCTGGATGGCAATATGTGTTTTATTTCTTGATCGTGATGAC
GGGCTTGAGTATCGTGTGTATTATTCCGATGTTAATCAACGAACTTAAAT
ATCTGTTCCGAAGACGCCCAGACCCTAGACGATATTCGCCTATAGGCTCT
CAAGCAGAACCCGAAGAAGTACGTTCGTAAAGTTACTTATGTCGAATAAT
TAGATTTTAGGGATACtcttttgtgtgttttttctttacttattgtattt
tttaagttatttttggacctaccctggtggaggtcctataaattaacctg
tgttcgtccgttcgtccgtccgttcgttcgttcgttcgtctgttaccaac
ttttctcaggattgaatcataggaatcttttgatttttggtacaaaggtg
ccaaatggtggtggccaaaatgtgacggagcccgattttcgaaaaaaaaa
ttttttggcaaatttgggccaaaaaacggctaaaaaactggttttttaga
ctttgtgaaaaattggataattaattttttctgattttttgtatgaaagt
ag Run BLAST on NCBI transcript from alignment at scaffold_117:497657..499779+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046787 ID=TCONS_00046787|Name=TCONS_00046787|organism=Clytia hemisphaerica|type=transcript|length=2123bp|location=Sequence derived from alignment at scaffold_117:497657..499779+ (Clytia hemisphaerica)
TAACATGTCAAAGGTGATTGATAAAATCGTCAAAGAGTTTAAATCATGGA
CTTGGCATCACTTGTTTGTCTTCGTGTTAACTTTCATGGCATATGCGGCT
TTCCACGGCTGCCGAAAGTCGTTTAGTAACATCAAGGATGAGTTAGCAGA
AAACTTTACTCCCAATACTACTTATTTCCCATATGATACTTGGCAGAAAG
AAACTACCTTCGCGAACAAGGATGACGCTGATGTTTTCTTAGGTAAGGTG
CCTTTTATTTTGACTGTTGAGCTTTATGTAAATCCTGGAGGCACTTCCTT
GGTCCCGGCTAACTGGGATTTTTCTTCGGAGTTTTTATGAAAGTGGTAAC
CTAATGAGGGCAAAGGTGTAAATGCGTTTTTGCTTTCATCGAATACCTGA
TATGATGTTGTGTCACAAATATTTAAATGAAGGTTCGATCGTGTTTACTG
TATAATAATTATTTTGACTAAAATATGATCGCGATTataaaatctcattt
tctttatttatagGTGAATTagattctttgtttttgttcgCCTACGCTTT
TGGTTTATTCGTCAATGGTGCGTTAGGCGACCGCCTGAATCTACGATATT
TCCTCGCCTTCGGCATGTGTGGTTCAGCTAtcgtcactttcattttcggt
TATCTTGGAGCAGCTTACCACGTCCGAAAAACCATTTTTTATCAGATTCT
ACAGTTCTTCAATGGTCTGTTGCAATCGATCGGATGGCCAGCTGTAGTAA
GTATTATGGGGAATTGGTTCTCAAAATCTTCAGCTGGATTTGTGTTCGGG
ATCTGGTCGGCAAATGCGTCCGTTGGAAACATTATCGGTTCCGTAGTTCT
AGCTCAAGTGTTGAATTATGGTTACGAATATGGTATGTTGTTGAATTCTT
TAATTCTTTTTTGTGTCGGtttgattgttttgttttgcctCGTTGTCCAC
CCTAATGAGATCGGCCTCGAAAACCCCGATCAACAAGAACGCGTCGAAAC
TTTAGGACAGGAGGATAACGATCCTCTACTACCATCAAACAAAGTCGCCG
TACAACAACCAAAACCGATCAGTTTCATCCAAGCTGTTCTAATACCAGGT
GTGATCCCGTACTCGTTAGCGTACGCTTGTCTGAAGTTGGTTAACTATTC
GTTCTTCTTTTGGCTACCAACTTACCTCTCACAGGGTTTACACTGGAAAG
ATGACAAGAGCGTCGAATTTTCAAACTTCTACGACATCGGTGGTATCTTT
GGAGGTATTATCGCGGGAATCGTTAGTGATTGTATCGGAGTTCGATCACC
AGTTGTCGGCATCATGTTAGCGTTTTCCGTCGGTTCAATCCTATGTTTTA
ATTATTTCTCGGGAGTTTACAATGTCACAGTCGCGATCTTATTCATTAAT
GGTTTTATGATCGGAGGTCCAGCCAATACAATTAGTACGGCAATCACAGC
TGATCTTGGAAAACACGAGAAAATCATGGGTAATGCTGAAGCTTTGGCAA
CAGTCACTGGCATCGTAGACGGGACTGGCTCTGTCGGCGCTGCCATTGGC
CAGTACCTTGTTGGGGTTATTAATAAGAAAGCTGGATGGCAATATGTGTT
TTATTTCTTGATCGTGATGACGGGCTTGAGTATCGTGTGTATTATTCCGA
TGTTAATCAACGAACTTAAATATCTGTTCCGAAGACGCCCAGACCCTAGA
CGATATTCGCCTATAGGCTCTCAAGCAGAACCCGAAGAAGTACGTTCGTA
AAGTTACTTATGTCGAATAATTAGATTTTAGGGATACtcttttgtgtgtt
ttttctttacttattgtattttttaagttatttttggacctaccctggtg
gaggtcctataaattaacctgtgttcgtccgttcgtccgtccgttcgttc
gttcgttcgtctgttaccaacttttctcaggattgaatcataggaatctt
ttgatttttggtacaaaggtgccaaatggtggtggccaaaatgtgacgga
gcccgattttcgaaaaaaaaattttttggcaaatttgggccaaaaaacgg
ctaaaaaactggttttttagactttgtgaaaaattggataattaattttt
tctgattttttgtatgaaagtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046787-exon-scaffold_117-1491911889:497657..497898 | TCONS_00046787-exon-scaffold_117-1491911889:497657..497898 | Clytia hemisphaerica | exon |
| TCONS_00046787-exon-scaffold_117-1510915933:497657..497898 | TCONS_00046787-exon-scaffold_117-1510915933:497657..497898 | Clytia hemisphaerica | exon |
| TCONS_00046787-exon-scaffold_117-1575043694:497657..497898 | TCONS_00046787-exon-scaffold_117-1575043694:497657..497898 | Clytia hemisphaerica | exon |
| TCONS_00046787-exon-scaffold_117-1491911889:498170..499779 | TCONS_00046787-exon-scaffold_117-1491911889:498170..499779 | Clytia hemisphaerica | exon |
| TCONS_00046787-exon-scaffold_117-1510915933:498170..499779 | TCONS_00046787-exon-scaffold_117-1510915933:498170..499779 | Clytia hemisphaerica | exon |
| TCONS_00046787-exon-scaffold_117-1575043694:498170..499779 | TCONS_00046787-exon-scaffold_117-1575043694:498170..499779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:497657..499779 + |
Blast
BLAST of TCONS_00046787 vs. Swiss-Prot (Human)
Match: SPX3 (Sugar phosphate exchanger 3 OS=Homo sapiens GN=SLC37A3 PE=2 SV=2) HSP 1 Score: 424.476 bits (1090), Expect = 2.258e-141 Identity = 226/469 (48.19%), Postives = 312/469 (66.52%), Query Frame = 2
Query: 56 HHLFVFVLTFMAYAAFHGCRKSFSNIKDELAENFTPN----TTYFPYDTWQKETTFANKDDADVFLGELDSLFLFAYAFGLFVNGALGDRLNLRYFLAFGMCGSAIVTFIFGYLGAAYHVRKTIFYQILQFFNGLLQSIGWPAVVSIMGNWFSKSSAGFVFGIWSANASVGNIIGSVVLAQVLNYGYEYGMLLNSLILFCVGLIVLFCLVVHPNEIGLENPDQQERVETL-------GQEDNDPLLPSNKV----AVQQPKPISFIQAVLIPGVIPYSLAYACLKLVNYSFFFWLPTYLSQGLHWKDDKSVEFSNFYDXXXXXXXXXXXXVSDCIGVRSPVVGIMLAFSVGSILCFNYFSGVYNVTVAILFINGFMIGGPANTISTAITADLGKHEKIMGNAEALATVTGIVDGTGSVGAAIGQYLVGVINKKAGWQYVFYFLIVMTGLSIVCIIPMLINELKYLFRRR 1417
HH+ VF+LTF +Y+ H RK+FSN+K ++E +TP+ + P + W F + + A +FLG LD++FLF+YA GLF++G +GDRLNLR+ L+FGMC SA+V F+FG L Y L NGLLQS GWP VV++MGNWF K+ G VFG+WSA ASVGNI+G+ + + VL YGYEY L+ + + F G+++ F L+V P EIGL + +E E G E+ D P+ + +V Q K ISF QA +PGVIPYSLAYACLKLVNYSFFFWLP YLS WK+ ++ + S +YD+GGI GG + G +SD + R+PV+ + L +VGS++ ++ ++ ++ + GF IGGP+N IS+AI+ADLG+ E I ++EALATVTGIVDG+GS+GAA+GQYLV +I K GW +VFYF I+MT +IV I P+++ E+ L RR
Sbjct: 19 HHVVVFLLTFFSYSLLHASRKTFSNVKVSISEQWTPSAFNTSVELPVEIWSSNHLFPSAEKATLFLGTLDTIFLFSYAVGLFISGIVGDRLNLRWVLSFGMCSSALVVFVFGALTEWLRFYNKWLYCCLWIVNGLLQSTGWPCVVAVMGNWFGKAGRGVVFGLWSACASVGNILGACLASSVLQYGYEYAFLVTASVQFAGGIVIFFGLLVSPEEIGLSGIEAEENFEEDSHRPLINGGENEDEYEPNYSIQDDSSVAQVKAISFYQACCLPGVIPYSLAYACLKLVNYSFFFWLPFYLSNNFGWKEAEADKLSIWYDVGGIIGGTLQGFISDVLQKRAPVLALSLLLAVGSLIGYSRSPNDKSINALLMTVTGFFIGGPSNMISSAISADLGRQELIQRSSEALATVTGIVDGSGSIGAAVGQYLVSLIRDKLGWMWVFYFFILMTSCTIVFISPLIVREIFSLVLRR 487
The following BLAST results are available for this feature:
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