|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048030 ID=TCONS_00048030|Name=TCONS_00048030|organism=Clytia hemisphaerica|type=transcript|length=544bp
CTTTATCATTAAGGATGACACTATCTTAGATTTCATCAAAGGGAACAAAC
TCTTAAAAAGCCAATCTGAAAGATATCAAGTTTTCAGAACTCTTCCCTCG
TTTAAAGTGTTCAAGAAATTAGCTGAACACGAAGCTCACATCATCGGAAT
AGGTGATCTAATCCTTACATACTCGAGTCATATTGTTCACCGAAAACTGG
TTATCCCTATCAAAAGTGATCCAGACGACCTCACAAGTTTGACAGGAATG
GAGAGACTTCCTATCCCCTTTAAGAGAAGTTCTTACTTTGATACCGTCGA
GAATTCGATTGTGCCTGAATTGTACACTTACTTTGTTATGAAAAAACACA
ACCTCTCCTACAAGGACGCAACAGAATTTATGTATggcaaatttcagtca
acgGTGTTTCATGTCTTGCGAGTCGaaaatGAAGAACTCTATTCGCCGAA
ACCAAATCAGCAAGTAAATGACAGCATCACAATTCAGTCTACCGACGGAG
ATCTTTTCAGCCAAAATACCGACGGTATCGTTATCAAAACTGAC Run BLAST on NCBI protein sequence of TCONS_00048030-protein >TCONS_00048030-protein ID=TCONS_00048030-protein|Name=TCONS_00048030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
FIIKDDTILDFIKGNKLLKSQSERYQVFRTLPSFKVFKKLAEHEAHIIGI
GDLILTYSSHIVHRKLVIPIKSDPDDLTSLTGMERLPIPFKRSSYFDTVE
NSIVPELYTYFVMKKHNLSYKDATEFMYGKFQSTVFHVLRVENEELYSPK
PNQQVNDSITIQSTDGDLFSQNTDGIVIKTD Run BLAST on NCBI transcript from alignment at scaffold_14:165542..167826- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048030 ID=TCONS_00048030|Name=TCONS_00048030|organism=Clytia hemisphaerica|type=transcript|length=2285bp|location=Sequence derived from alignment at scaffold_14:165542..167826- (Clytia hemisphaerica)
CTTTATCATTAAGGATGACACTATCTTAGATTTCATCAAAGGGAACAAAC
TCTTAAAAAGCCAATCTGAAAGATATCAAGTTTTCAGAACTCTTCCCTCG
TTTAAAGTGTTCAAGAAATTAGCTGAACACGAAGCTCACATCATCGGAAT
AGGTGATCTAATCCTTACATACTCGAGTCATATTGTTCACCGAAAACTGG
TTATCCCTATCAAAAGTGATCCAGACGACCTCACAAGTTTGACAGGAATG
GAGAGACTTCCTATCCCCTTTAAGAGAAGTTCTTACTTTGATACCGTCGA
GAATTCGATTGTGCCTGAATTGTACACTTACTTTGTTATGAAAAAACACA
ACCTCTCCTACAAGGACGCAACAGAATTTATGTATGGCAAATTTCAGTCA
ACGGTGTTTCATGTCTTGCGAGTCGAAAATGTAAGTATTTTGCAATTTCA
AGCCCAGAAAAGGTGTTAATCTGAAAATCGTGAAGCTCCCCTCCCCCAAA
TCATCTGATTACTTTCTAATTAAGGGCTCTGACCATAGTGAATTTTTCAT
AATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAAAACTA
TGGCATGTTATACATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTAT
TTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAGA
TTTTCGCAGTAGATGATGTATCTTTTACCGAAAGATAAAAATTTTTGCGG
AAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTTT
TTCATCAATTTTTCATCTGGATTTTGCTTAAAAAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAATTCTTTGCGGACAGTGT
AAAGAAATTTTGAAACAAAAAAGTTAATTACCCATTAAAACTAAGCACTT
TTTGTAAAAGAGGATGATGCAACATACTATTAACATCTTTTTAAAGTTCA
TAACGTCATTTTTGCAATTAAATTCTTCATTACTCTTAAGGGATTCGATT
AAAAAGCAATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAGGAACCTG
AAATATAACTTTTATGTTCAAATACCAAAATCAATTTTTGGACTATGGTC
AGAGCCCTTAAAGTTAGGGAATATCGCACGTTTATTGTTCGAGAAAGCAA
ATTGTTCAAGCTTATTTCATTAAGCGATAATAACATTTCTCTAAGTAAAT
TTGGTAGCAAGTATCTACAGAATGTCGAAGTGATCGTGAATTCAAATGTT
GTTTCTCTATTTCAGGAAGAACTCTATTCGCCGAAACCAAATCAGCAAGT
AAATGACAGCATCACAATTCAGTGTAAGTCATGATAATTCCACGCTAAAT
GCTAGTCAAATACTGATTTTCATTTTGATCAAAGTAGATGGAAATACGTT
GTAATACTCAGTAGACCGAGATTTTGGTCAAGAAATTTAGAAAAGCCAAA
ACTTTGCTATAAAGAACTGTCTTTTTCAGATTATTAACCGTTTTTGGAAC
CTCTTTTTGTCAACAAATCAACCACAAAATCTAGCCCTGTTTCACGTTCT
ACTGTCCTCTAGTAAAATGTTTCAAGTCTTACCACTGGATACCTTTCCAT
CAGTTGGTCGGTTTGAGCTTTTTTTAAAATTTGCGGTATAGTCGATTAAA
AAAAAACTTGTCCGGTGGGTTGCCCTGTGTCACAAATATTGATCTGTTAC
TCCCACTCCCACCCAAGCATAATTATCAATGGAATATTTTTACCCAAACA
TGCTACTAAATAGGTACTATAACAAAAACTTCCTCTAGGGTTGTAGTTTA
TTATTTTTGCTCTGGTTATCTTTTTTTAGCTACCGACGGAGATCTTTTCA
GCCAAAATACCGACGGTATCGTTATCAAAACTGAC Coding sequence (CDS) from alignment at scaffold_14:165542..167826- >TCONS_00048030 ID=TCONS_00048030|Name=TCONS_00048030|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_14:165542..167826- (Clytia hemisphaerica)
CTACCGACGGAGATCTTTTCAGCCAAAATACCGACGGTATCGTTATCAAA
ACTGACGAAGAACTCTATTCGCCGAAACCAAATCAGCAAGTAAATGACAG
CATCACAATTCAGTTTTATCATTAAGGATGACACTATCTTAGATTTCATC
AAAGGGAACAAACTCTTAAAAAGCCAATCTGAAAGATATCAAGTTTTCAG
AACTCTTCCCTCGTTTAAAGTGTTCAAGAAATTAGCTGAACACGAAGCTC
ACATCATCGGAATAGGTGATCTAATCCTTACATACTCGAGTCATATTGTT
CACCGAAAACTGGTTATCCCTATCAAAAGTGATCCAGACGACCTCACAAG
TTTGACAGGAATGGAGAGACTTCCTATCCCCTTTAAGAGAAGTTCTTACT
TTGATACCGTCGAGAATTCGATTGTGCCTGAATTGTACACTTACTTTGTT
ATGAAAAAACACAACCTCTCCTACAAGGACGCAACAGAATTTATGTATGG
CAAATTTCAGTCAACGGTGTTTCATGTCTTGCGAGTCGAAAATCTACCGA
CGGAGATCTTTTCAGCCAAAATACCGACGGTATCGTTATCAAAACTGACG
AAGAACTCTATTCGCCGAAACCAAATCAGCAAGTAAATGACAGCATCACA
ATTCAGTTTTATCATTAAGGATGACACTATCTTAGATTTCATCAAAGGGA
ACAAACTCTTAAAAAGCCAATCTGAAAGATATCAAGTTTTCAGAACTCTT
CCCTCGTTTAAAGTGTTCAAGAAATTAGCTGAACACGAAGCTCACATCAT
CGGAATAGGTGATCTAATCCTTACATACTCGAGTCATATTGTTCACCGAA
AACTGGTTATCCCTATCAAAAGTGATCCAGACGACCTCACAAGTTTGACA
GGAATGGAGAGACTTCCTATCCCCTTTAAGAGAAGTTCTTACTTTGATAC
CGTCGAGAATTCGATTGTGCCTGAATTGTACACTTACTTTGTTATGAAAA
AACACAACCTCTCCTACAAGGACGCAACAGAATTTATGTATGGCAAATTT
CAGTCAACGGTGTTTCATGTCTTGCGAGTCGAAAATCTACCGACGGAGAT
CTTTTCAGCCAAAATACCGACGGTATCGTTATCAAAACTGACGAAGAACT
CTATTCGCCGAAACCAAATCAGCAAGTAAATGACAGCATCACAATTCAGT
TTTATCATTAAGGATGACACTATCTTAGATTTCATCAAAGGGAACAAACT
CTTAAAAAGCCAATCTGAAAGATATCAAGTTTTCAGAACTCTTCCCTCGT
TTAAAGTGTTCAAGAAATTAGCTGAACACGAAGCTCACATCATCGGAATA
GGTGATCTAATCCTTACATACTCGAGTCATATTGTTCACCGAAAACTGGT
TATCCCTATCAAAAGTGATCCAGACGACCTCACAAGTTTGACAGGAATGG
AGAGACTTCCTATCCCCTTTAAGAGAAGTTCTTACTTTGATACCGTCGAG
AATTCGATTGTGCCTGAATTGTACACTTACTTTGTTATGAAAAAACACAA
CCTCTCCTACAAGGACGCAACAGAATTTATGTATGGCAAATTTCAGTCAA
CGGTGTTTCATGTCTTGCGAGTCGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048030-exon-scaffold_14-1575043694:167397..167826 | TCONS_00048030-exon-scaffold_14-1575043694:167397..167826 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1575043694:166104..166161 | TCONS_00048030-exon-scaffold_14-1575043694:166104..166161 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1575043694:165542..165597 | TCONS_00048030-exon-scaffold_14-1575043694:165542..165597 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1510915933:167397..167826 | TCONS_00048030-exon-scaffold_14-1510915933:167397..167826 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1510915933:166104..166161 | TCONS_00048030-exon-scaffold_14-1510915933:166104..166161 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1510915933:165542..165597 | TCONS_00048030-exon-scaffold_14-1510915933:165542..165597 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1491911889:167397..167826 | TCONS_00048030-exon-scaffold_14-1491911889:167397..167826 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1491911889:166104..166161 | TCONS_00048030-exon-scaffold_14-1491911889:166104..166161 | Clytia hemisphaerica | exon |
| TCONS_00048030-exon-scaffold_14-1491911889:165542..165597 | TCONS_00048030-exon-scaffold_14-1491911889:165542..165597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:165542..167826 - |
Blast
The following BLAST results are available for this feature:
|
