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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048306 ID=TCONS_00048306|Name=TCONS_00048306|organism=Clytia hemisphaerica|type=transcript|length=2023bpRun BLAST on NCBI protein sequence of TCONS_00048306-protein >TCONS_00048306-protein ID=TCONS_00048306-protein|Name=TCONS_00048306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp MKHLIIRRGGLPMTIIPVNHNTSSLATSNTNVSIGGHCHRMTSSDYLGFLRun BLAST on NCBI transcript from alignment at scaffold_142:667215..677622+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048306 ID=TCONS_00048306|Name=TCONS_00048306|organism=Clytia hemisphaerica|type=transcript|length=10408bp|location=Sequence derived from alignment at scaffold_142:667215..677622+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:667215..677622+ >TCONS_00048306 ID=TCONS_00048306|Name=TCONS_00048306|organism=Clytia hemisphaerica|type=CDS|length=3672bp|location=Sequence derived from alignment at scaffold_142:667215..677622+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048306 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.447e-72 Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 3
Query: 1080 CHRMTSSDYLGFLFTALGEIPGLLLCFGLADRLGRRPALSVLCFVSVLAMSLL-HACLNRYLLVGTLFILRAFVTGFIQTVYLYTPEVYPTNIRAIGFGTASSMARIGAIITPFVSEVLLDTYPHHAIFIYSGLMAVCIFASLLLPIETKGMKLKE 1544
C ++ DY+ L+T L E PG+L+ + DRLGR+ ++ LCFV SLL C+ R +L LFI RAF++G Q Y+YTPEVYPT RA+G GT S MAR+GA+ITPF+++V+L++ + + +YSG + AS LPIETKG L+E
Sbjct: 365 CEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMA-LCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519 HSP 2 Score: 93.2041 bits (230), Expect = 2.447e-72 Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 3
Query: 135 SLGNIGMGKKERSFEKISL-LPANEDDGQIDINNGFYEPQ---YTVNECLEYIGFGWFQVKLTVVLGFSWMADAIAITSLAVLAPALQCDWNLSPEQTALISTCVXXXXXXXXXXXXXXCDTFGRKLALTLSASLILVSFLCSSFAINYNFVLIFMIMEGFSVAGAGQSFSL 638
S + G+ E E + + L A E D + F P + V + +E IGFG FQ KL+V+ G +WMADA+ + L++LAP L C+W L Q AL+++ VF+GM + WG D +GRK L +S L + S+FA Y+++L+ + GF + G QS +L
Sbjct: 25 SEDDTASGEHEVQIEGVHVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTL 196 HSP 3 Score: 77.7962 bits (190), Expect = 2.447e-72 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 2
Query: 629 IFFVLGNVLSGLVAVFVMNQHGWRWFVRMTSXXXXXXXXXXXXXXESPRYLIGIGKREAAAKVLSRIADENNTQLPNGKLKILPCYQRKPRGRIIDLLTIDQRRTTILLWFLW-NETFDY 985
+F+ +G V ++AVFVM GWRW + ++++P+ + + +WLPES RY + G +E A L RIA EN +P GKL I +++ RG++ DL T R TT+LLWF+W + F Y
Sbjct: 215 VFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLII---SRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSY 331 The following BLAST results are available for this feature:
BLAST of TCONS_00048306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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