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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048558 ID=TCONS_00048558|Name=TCONS_00048558|organism=Clytia hemisphaerica|type=transcript|length=1491bp
CAATAAGCGTGTATTTTTAATCTCGAGATGGAATTTATTAATTATTCAGC
TATATCGAAACGTCACAGCAGGAAAGAGACGAGTTATAAAAGGCGAAAAA
GGGTTCTCTTTCATCAATCAGATTCAAATTACAATTATGTATAGAAGTGT
ATAGAATTCATCACATAGCATTATATTTTGTTATAGAGGGTAGAGAAACT
GTTTCTTACTTAGTGTGGAGGCGAAACGTTTATTGAgaagagagagaaag
agaaaaaagagAATTTCAGTAAACTAGAAAACAAACTTCATCAAAATGGT
TCAAGAAGTCAAGACAATGGCTGAATACCAGCAAATCCTTGCTGACAACA
AATATGTTTGTGNAAATGGTTCAAGAAGTCAAAACAATGGCTGAATACCA
GCAAATCCTTGCTGACAACAAATATGTTTGTGTGGATTACTTTGCAACTT
GGTGCGGACCATGTCGTATGATCGCCCCTAAGATCCAAGAATTCGAGGGA
AAGTATGGCAACGTGAAATTCATTAAAGTTGATGTAGACCAAGCAACTGA
CATTGCAGAAAAGGAAGGAATCAGCGCTATGCcaacattcaaatttttca
ccaaTGGAGAAAGAAGTGGCGAAGTTATTGGAGCTTCAGAAGCCAAAATC
AAGGAAGAATTAGAAAAATGCAAATAGGTTTCATTGTAAATCGTATGCTA
TTTTTATGATATACGTTAGTCAAGATTTCGTTTTTTCCCATTTATCACAA
ACATTTAAACAAATTTGCAAATGCTctttctcttttgaaaataaaaggaa
aatccTTTAATCTTTTAAATATTATGGAAAGAGTTGTATATTGATAGACA
ATAATTAAGTCTTTGTTGTCCCCAGTGAGCTGTAGCTAATACTATTTCAA
CAAATATTATATGCAACAATTTGTGGCTAAGCTAGTTATATAAATTATAA
TTATCTTGTAAATCTTATTTATTATCTGTTTAggaaattaaatttcaaaa
aaataaaaactttgtcTTTTTAACTTTCCAAAATCTAATACGTCAATGAG
AAAACAGTGATAACAAAAGCGATATTTTAAACAAGAGCTTAATTTTATGA
GACATTAGGGAAGCATGGTATTACATACAAATCAACATTCTTAACTACTC
ACACTTGCTAGCTAATTTATGTAATTTTCGGACTTATTGACCAAAATAAT
AGGGTAAACATTACCATTCCCTCAGCCATATCAGAAATTAAAATATAGGA
AATCTGCCTTGTTCTGAAATaaagtttttcataaaaaaagctTCTTAAAA
TATATACCTCTTAATAGCAATCACAAAAAAAAGGAATTCCATACGTCTAT
CAACCCTTGGCGGCGCGGCTGACTTTTAATGGGTTTGGTAGAAGTGTTTA
ATAAGGATTTCATTACAACGACATTAGGTGTAAATGGGTTGAGAGTTTTT
AATAATGCGAAAGTCAAATTACTTTGCTAACATCACTTTGG Run BLAST on NCBI protein sequence of TCONS_00048558-protein >TCONS_00048558-protein ID=TCONS_00048558-protein|Name=TCONS_00048558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MFVXMVQEVKTMAEYQQILADNKYVCVDYFATWCGPCRMIAPKIQEFEGK
YGNVKFIKVDVDQATDIAEKEGISAMPTFKFFTNGERSGEVIGASEAKIK
EELEKCK Run BLAST on NCBI transcript from alignment at scaffold_143:412927..415306- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048558 ID=TCONS_00048558|Name=TCONS_00048558|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at scaffold_143:412927..415306- (Clytia hemisphaerica)
CAATAAGCGTGTATTTTTAATCTCGAGATGGAATTTATTAATTATTCAGC
TATATCGAAACGTCACAGCAGGAAAGAGACGAGTTATAAAAGGCGAAAAA
GGGTTCTCTTTCATCAATCAGATTCAAATTACAATTATGTATAGAAGTGT
ATAGAATTCATCACATAGCATTATATTTTGTTATAGAGGGTAGAGAAACT
GTTTCTTACTTAGTGTGGAGGCGAAACGTTTATTGAGAAGAGAGAGAAAG
AGAAAAAAGAGGTGTGTTGTGTTTTGCTCTTTAGTTTCGAAATCATATCT
ATTGGCATGGGAAAGATAGTTTTGACAGTAACAGCAACAACATAAAATTT
CATTAGATAAATATTTAGCTTTGAGGAAAGGGTTATGGAAACGTGAAAGG
TTTTAAATTCCGAAATTGATATTTAGAGAGTTTGCAGTACTAAACAGCTA
AACAGAGAGGAAAGAACCTTCAAAAAACACAACAGAAAGGATAAAATAGA
TATTTTTATGATATTTCATCTTATCTTTTAGAATTTCAGTAAACTAGAAA
ACAAACTTCATCAAAATGGTTCAAGAAGTCAAGACAATGGCTGAATACCA
GCAAATCCTTGCTGACAACAAATATGTTTGTGNAAATGGTTCAAGAAGTC
AAAACAATGGCTGAATACCAGCAAATCCTTGCTGACAACAAATATGTTTG
TGTGGATTACTTTGCAACTTGGTGCGGACCATGTCGTATGATCGCCCCTA
AGATCCAAGTTAGTGAGTATACCCTATCGGTGTTTGTTAACTTTCAATAT
GCACAACACAGTAACACCCCCTTTCTCATAGACCCGGTAGGATTTTTTTC
TGCCAGTGCAGTGGGGGTAAAAATAACAGACTGAAACTCAGTGGGGATTG
ATATTTTTTATGGTTGGGGATTTAGTTCTTTTGTTTTCAAGAAAATCCAG
TGGGGATGGGAAAGATTGCACAACATTTTGCAGGGAGTCATACTTTCATT
GCGGACAAAAATTGGAGTACAATTTTACACCAGAGACGGCCAATTTTTCC
AGTGGGTCTGTGAGAAGGGGGTGTGCAGTAGATTGTGGCGTATTGACGAA
AGTTTTCTTTTATCAATCGAAGCAACATTTCACTTCAACGAGCTTTTAAT
CAGACCCGACCGTGGGATTTTGAGGCTAGTCTTTGATTGAAAATTCACAA
AACTCTAATCTGTTTTTATTTAACTCTGATTTTTCAATATCGATGTATAA
TCGAGATTAATCAAAAATATGATTACTCATCCAGACTCCAATTTGTCCAT
TGAAGAACATTTAGGGGGCTATGAATTTCAAAAAGTACACAAATAACAAA
ACTGAGAATAAATTTCCATTTTTATAGGAATTCGAGGGAAAGTATGGCAA
CGTGAAATTCATTAAAGTTGATGTAGACCAAGCAACTGACATTGCAGAAA
AGGAAGGAATCAGCGCTATGCCAACATTCAAATTTTTCACCAATGGAGAA
AGAAGTGGCGAAGTTATTGGAGCTTCAGAAGCCAAAATCAAGGAAGAATT
AGAAAAATGCAAATAGGTTTCATTGTAAATCGTATGCTATTTTTATGATA
TACGTTAGTCAAGATTTCGTTTTTTCCCATTTATCACAAACATTTAAACA
AATTTGCAAATGCTCTTTCTCTTTTGAAAATAAAAGGAAAATCCTTTAAT
CTTTTAAATATTATGGAAAGAGTTGTATATTGATAGACAATAATTAAGTC
TTTGTTGTCCCCAGTGAGCTGTAGCTAATACTATTTCAACAAATATTATA
TGCAACAATTTGTGGCTAAGCTAGTTATATAAATTATAATTATCTTGTAA
ATCTTATTTATTATCTGTTTAGGAAATTAAATTTCAAAAAAATAAAAACT
TTGTCTTTTTAACTTTCCAAAATCTAATACGTCAATGAGAAAACAGTGAT
AACAAAAGCGATATTTTAAACAAGAGCTTAATTTTATGAGACATTAGGGA
AGCATGGTATTACATACAAATCAACATTCTTAACTACTCACACTTGCTAG
CTAATTTATGTAATTTTCGGACTTATTGACCAAAATAATAGGGTAAACAT
TACCATTCCCTCAGCCATATCAGAAATTAAAATATAGGAAATCTGCCTTG
TTCTGAAATAAAGTTTTTCATAAAAAAAGCTTCTTAAAATATATACCTCT
TAATAGCAATCACAAAAAAAAGGAATTCCATACGTCTATCAACCCTTGGC
GGCGCGGCTGACTTTTAATGGGTTTGGTAGAAGTGTTTAATAAGGATTTC
ATTACAACGACATTAGGTGTAAATGGGTTGAGAGTTTTTAATAATGCGAA
AGTCAAATTACTTTGCTAACATCACTTTGG Coding sequence (CDS) from alignment at scaffold_143:412927..415306- >TCONS_00048558 ID=TCONS_00048558|Name=TCONS_00048558|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_143:412927..415306- (Clytia hemisphaerica)
GAATTCGAGGGAAAGTATGGCAACGTGAAATTCATTAAAGTTGATGTAGA
CCAAGCAACTGACATTGCAGAAAAGGAAGGAATCAGCGCTATGCCAACAT
TCAAATTTTTCACCAATGGAGAAAGAAGTGGCGAAGTTATTGGAGCTTCA
GAAGCCAAAATCAAGGAAGAATTAGAAAAATGCAAATAGATGTTTGTGNA
AATGGTTCAAGAAGTCAAAACAATGGCTGAATACCAGCAAATCCTTGCTG
ACAACAAATATGTTTGTGTGGATTACTTTGCAACTTGGTGCGGACCATGT
CGTATGATCGCCCCTAAGATCCAAGAATTCGAGGGAAAGTATGGCAACGT
GAAATTCATTAAAGTTGATGTAGACCAAGCAACTGACATTGCAGAAAAGG
AAGGAATCAGCGCTATGCCAACATTCAAATTTTTCACCAATGGAGAAAGA
AGTGGCGAAGTTATTGGAGCTTCAGAAGCCAAAATCAAGGAAGAATTAGA
AAAATGCAAATAGATGTTTGTGNAAATGGTTCAAGAAGTCAAAACAATGG
CTGAATACCAGCAAATCCTTGCTGACAACAAATATGTTTGTGTGGATTAC
TTTGCAACTTGGTGCGGACCATGTCGTATGATCGCCCCTAAGATCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048558-exon-scaffold_143-1575043694:415046..415306 | TCONS_00048558-exon-scaffold_143-1575043694:415046..415306 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1575043694:414549..414775 | TCONS_00048558-exon-scaffold_143-1575043694:414549..414775 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1575043694:412927..413929 | TCONS_00048558-exon-scaffold_143-1575043694:412927..413929 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1510915933:415046..415306 | TCONS_00048558-exon-scaffold_143-1510915933:415046..415306 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1510915933:414549..414775 | TCONS_00048558-exon-scaffold_143-1510915933:414549..414775 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1510915933:412927..413929 | TCONS_00048558-exon-scaffold_143-1510915933:412927..413929 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1491911889:415046..415306 | TCONS_00048558-exon-scaffold_143-1491911889:415046..415306 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1491911889:414549..414775 | TCONS_00048558-exon-scaffold_143-1491911889:414549..414775 | Clytia hemisphaerica | exon |
| TCONS_00048558-exon-scaffold_143-1491911889:412927..413929 | TCONS_00048558-exon-scaffold_143-1491911889:412927..413929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:412927..415306 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006662 | glycerol ether metabolic process |
| GO:0045454 | cell redox homeostasis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015035 | protein disulfide oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
| biological_process |
GO:0006662 |
glycerol ether metabolic process |
| molecular_function |
GO:0015035 |
protein disulfide oxidoreductase activity |
Blast
BLAST of TCONS_00048558 vs. Swiss-Prot (Human)
Match: THIO (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 5.961e-22 Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 3
Query: 366 MVQEVKTMAEYQQIL--ADNKYVCVDYFATWCGPCRMIAPKIQEFEGKYGNVKFIKVDVDQATDIAEKEGISAMPTFKFFTNGERSGEVIGASEAKIK 653
MV+++++ +Q+ L A +K V VD+ ATWCGPC+MI P KY NV F++VDVD D+A + + MPTF+FF G++ GE GA++ K++
Sbjct: 1 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLE 98
The following BLAST results are available for this feature:
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