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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048726 ID=TCONS_00048726|Name=TCONS_00048726|organism=Clytia hemisphaerica|type=transcript|length=2629bp
AGGTTTCTTGATAAAAGCCCTTCTTGAGATATCACTGACACGGTGCTTAA
CTTAAACctgtaaaatgaaaataaagccTACTATATAGTTATGCTTTAAA
GAAAAACCTTTATATGAAGTTCACGTCAACATTAATATAGTGTAAACCAT
ATGTTCCAATTGGAGGAGGGGAAGGTGGCGGCGATGGTAGTGCTACCAGG
GGTCACAAAAACATTGGAGGAAGTTGAAGTGGTGGTAGACGAGATGGAGG
TTGTCTTGGCAGTGATGGACGGTGTTGCGGCGGTAGTGGTGCGGTTGGGG
TGGTGGTGGCAAAGCAAATATTTGCCTTGGAACCACCCATTTCCCCATTG
ACCAAGTTGCTGTTGAAAATTCATATTTCAAGGTAGATGTGAAAACTAAA
TTTATTTTCTGAGTCAACTTCACTTACTGTAGGTGTTTCACATTAGTTTC
GAAGATCTTTGAATTTATCGATTTCCTCTTCGCTTCAAggttcaaatttt
tgttttagtttgtGTTTTTATCCGTGTTTCTTGGAGCGAAAGTGATAGAT
ATAGATGGACCATCATATTAATgctttaaagaaaaactttcataaGGAAC
TCACGTCAACATTAATATAGTGTAAACCATATGTTCCAATTGGAGGAGGG
GGAGGTGGCGGCGGCAGCGGTGGTGGTGGTGGCATCAGGGGTCGTAAAAC
ATTGAAGGATGTTGAAGCGGTGGGGGTGGTGGTAGATGGGATGGAGATTG
TCTTGGCAGTGGTGGTAGTGGCGATTGGGGTGGTGGTGGCAAAGCAAATA
TTATAACGCATTACTACTAGATTCCGCTCTAGGGAATTCAAACAAGCTGA
GGGTCACTTTTTGGTCGGTAATTCTGCTGAGCGGTTTGAGGGGTCAATTG
TAAGGAATTTTAAGAGCCTTTCTGACTTCAAGATCGTAAATAGCCAGGCG
AATCTTGCCCAACTTTTACCACCATCATTTTAAAGACTTAATTGATCGCG
GCCCTCCGTGGCTATGGACGAGCTTCCCACTCTTTTCATTCGTTCTAACA
CTTGCCTTCTTTCTCGATACACCCTTTTCTTGTTCAACCATTTCTCGCAC
TATAAAACTACGATTGAGCCTCCTTGCAGTCAAAAAAATACTCTCAAGTT
GAGCTTGCATTTGAGACTATTTGTTAACAAGACAAGACTTCTTTGATTGC
TGGTAGTCAATAGGAATATACTTACTGAAAGTTTTTGTCTACttgtcgtt
cgttcgttcgttcgttcgttcgacgCGAAAGACATGGCGTTGTTGGTAGT
CATTTCACAGTATTACACGAGGTGTTATCGGACATGGATGGTCGGCAAAT
GATTTCTACCTCACTAAAGAAGAACGACATTGTCTTTTTGCGGTCTGCAC
ATATTGCCATGTCTTTTGCAACATTCAGATTCGCTGCGGTGAATTGACCA
CAGGAAATATACTCCTACAGTCGTTTGAAGTTCTTTGTTTTTGGGATGTT
GTCAATGAATCCTGGGTGCGAAGTATTGATCATGATGAAAATAGTGAAGC
ATGTGTCCAGGGGGCAAGTATTTGTGAGTGTAAAGCCATGGATTACTCCT
CCATATCGTGAAAGAGGGAAACCGTTGTTTGATTTAGAGCGTTTCTTTGC
AGGGCGAGGTATTGGTATTGGTAatgttatgaaaaaatagtttgaaataa
ccgaaatgaaaaaaaagcaaTGTCAGAATTTCCTCATGCTCAACTTCAGG
TGTTGTCTTTTAAACTCACTGTAAATtataataacaataacaataaaaat
tatAATGATGATGATAACTAAACTTATACTTTAAGTCGGCTTTGTTGGCG
ACACTGGTTATAACCGGTTAATTTATGACGTCGGCTGTCGGGGTTCCATC
AGCAATCAAGCCATTGTCTTTTGTTATGATGTCAGAATTACAAGTGGCAA
GTGCATTCACCTTACCGGTGACGTAATGTTTGCTCTGATGGATTTGAGTT
GATCTCAATCTTTCTTGTTTTAGCTCAATatccttttctttttcctccCA
TAATAGAAGGATCCCAGAGGATTCCGTTTGCATAGCAACACAGCTTATTC
AACGTAACGTGATACACAAAAATATCTTCTTCGTGTTCGTATtcaaacaa
agaattttttctatGATAGAATACTCACGTTTGCAATTAATTAATAAGGa
gatatacaatttttttagcACTTTCAATGCTCTGCAAAATCCCTTCCTTA
TTGTCTTTGTTGCTGCTTGCTGCTTACCATCTTTCTTTTTGATTGCCTTC
TTTAGATCTTCTATTTTGTTGAAGTCATTACTTTCAGTAATTTGTGATTT
TAGctgattaatcaatttttgcTTTGATCTAGGGTCGTCACTCTCCCTTT
TCCAAAGGTCATCAGAGGGTTCGTCAGGCTTGGCTGCGTCGCTGGGTTGA
GTGGCGTCCTCCTTTGGGTTGGGGGCGTTCGTCTGGTCTGTAGATTGTAC
GTTTTCGGACAGGTCGAATTCAAGATGGCGTCTTTCTGTACACACTGCTT
TGAATGATTCTCCctcaaaatcgagaaaaaagtCGTCTTTAGTTTGAGTA
TGGATACCCAAAAACCATCCTCCCACAGG Run BLAST on NCBI transcript from alignment at scaffold_146:49467..56687+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048726 ID=TCONS_00048726|Name=TCONS_00048726|organism=Clytia hemisphaerica|type=transcript|length=7221bp|location=Sequence derived from alignment at scaffold_146:49467..56687+ (Clytia hemisphaerica)
AGGTTTCTTGATAAAAGCCCTTCTTGAGATATCACTGACACGGTGCTTAA
CTTAAACctgtaaaatgaaaataaagccTACTATATAGTTATGCTTTAAA
GAAAAACCTTTATATGAAGTTCACGTCAACATTAATATAGTGTAAACCAT
ATGTTCCAATTGGAGGAGGGGAAGGTGGCGGCGATGGTAGTGCTACCAGG
GGTCACAAAAACATTGGAGGAAGTTGAAGTGGTGGTAGACGAGATGGAGG
TTGTCTTGGCAGTGATGGACGGTGTTGCGGCGGTAGTGGTGCGGTTGGGG
TGGTGGTGGCAAAGCAAATATTTGCCTTGGAACCACCCATTTCCCCATTG
ACCAAGTTGCTGTTGAAAATTCATATTTCAAGGTAGATGTGAAAACTAAA
TTTATTTTCTGAGTCAACTTCACTTACTGTAGGTGTTTCACATTAGTTTC
GAAGATCTTTGAATTTATCGATTTCCTCTTCGCTTCAAggttcaaatttt
tgttttagtttgtGTTTTTATCCGTGTTTCTTGGAGCGAAAGTGATAGAT
ATAGATGGACCATCATATTAATgctttaaagaaaaactttcataaGGAAC
TCACGTCAACATTAATATGGTGTAAACCACATGTTCCAATTGGAGGTGGT
GGTGGTTGAAGCGGTGGTTGTGGTTGTAGACGAGATGGTGGTTGTCTTGG
CAATGATGGACGGAATGGTAGTTGGTGTTGCGGTGGTAGTGGTGCGGTTG
GGGTGGTGGTGGCAAAGCAGATATTTGCATGTGAGGACGTTGTTGGGCCA
TTGACCAGGTTGCTGTTGGGCCATTTTCTAGAACATAATATGAAAAAGGG
CCGTTCATTTTTCGTTACATGGATATTAGGTAATCTCTTATGTATTCACT
GAATGTTCTTCATATCCTTTTTGTAGTTTTTGCTTATATTTCGGAGAATG
TCTTTGACCGGCTGCCAATCCGAGAAATTGTCTACGAATGACCAACAGTC
TCTTGGCTTGCAACTTTGCCACTTTTTGAAGTTGATCTCGTCATTTTGGA
TCAAATCTACGTAGTTGTAGAGGATCTTTAAGATGGTGTCCCTTTGCCAT
TTACTAGCCTTGTACCAATCGTTTCCGTTTGACttcttattcgcgaaatt
atgTATCTAGAACTCTCTAAGGCTACGGCTGAAgcggcgagggaaatggc
gagtaaggcaagtaatggcgggtgaaagcaagtccgatatttgacgtacg
gcattatatcgactttgcttatacggtgttttggtgtttttcccatacag
agcaaagtagacaacgatcTACTATGAGTAAACCTGCTAGAGTAAACTTc
tggatttcaaaaatttaagtgACATGAGACTCAAAAGATAACAAAATCTC
caaataaagaaataaatacaTTATCAGCTTTTATTTCACGAAACGCCTGC
ATGGCATCACGGGAAATTTCTAGGAAATAGAAAATAGAGGTAATGCTGCT
CGCCCAAACATTAAAACATACCCGAACTAATGTAGAACGGCAAATCATGT
CttaaaaacttctttttctcATTCCTGATAAATGTATTGTCTTCGTACAC
AGGCATGGTGTAAAAGAGGTCACCCAAATTGTGAAATACTTTGTGTCGCC
AACTGCGTTGCTGCAAACACTTGAGGTGATTTATTGTTTGACTAGAGAGT
TTGACGATATCCTCCTTCTTCATCTCTCGGCAAAGTTTTGCCAAACGACA
CATTTGGATTTCGGAGATCTCTttctctaaaaaaataagaGATGAATTTT
ACTATTACAATCCTTTTATAAGCAATAGGATGGtgaaaactttgagaaat
tttcattccttttaaaaaaaattaaaggtaGTGTCTTGTTTAAAAAACCC
CATTTTTGGACATTGAGCCAAGCCTGTTCATAAAACATGATAATTTTAAT
TCTTTCTGCTTCCTTATGAAAATCGGAGAATTGATTGAATTGAAAAGCGT
TGAAAGAAAAGGGATGAGATCTCTTTCTTGACATGATACTATCTACTTTA
ATGTCAGAAAAATTGGcgtccagaaaatttcgcgagtAAGACAATTCGCA
AAATTTCGCGTGTTTTGATGGAATTTAGTTTCGCGAATCGACAAGATTAA
TTCATTTTGCAGGAAAttattttcgcaaaattggatTCTCCCACACTAAA
ACACTGGTAAAATAAGCTAAAAAGCGTGTTTTTCTGTTCTAATAAGCAAA
ATTTGACTAAGAAAACCTGAAAACTCTGTCTCGTAGGAATCAATTTTCGC
GAATGAGCCAAAAGATTTTTTCGCGACTATTTCATTTCGCGAATTGAGGG
GTCATTCGCGAAATTCGCGAAATTTTCTGGACGCAAAATTTTCTGACCTT
AAAGTACTCAATTATCCATAACGAGTCATTAAAATGTATCAACTAACCTT
TAAGCATATCGTAGAATTCATCAATACCTGGTAAAAAAGAATAACAAAAC
AGTTTATGTGCTATAAAAGTAGGCAATACTATTCTTTTCTCCCAAGGTCG
TAAAATGCCCACTAATGAAAGTTCATTTTACCTTCATCATCATTGTCATT
CTCATTATTAACATGACCATCACCTTCGGGAGCACACTGACCTGATGCTG
CTGAAAAGAAATAGAAAAATCAGTCCGTTAACATTAACCGTAAGCTATTT
ACATAATGTTTGGTAACAACCAGTTTCATATCTATAAATGTAGGCAATAC
TATTGAAGTATTCATACTGCTTCATTGTTATATCTCTTAATAAACCTAAA
ATCTCAGAATAATGCCTACTTTAAAAAAGGCTTTACACCTCGTACCTTTA
GTATGATTGTCATTCTCATTGACGTACGTACATTCACGTACGGAAGCCTG
ATCTGATGATTCTGAAAAGAAATCGAAGAAAATCAGtcggttaaaatcaa
ccttcagCTATTTAGTAGGCAATACTATTGAAGTATTCATACTGTTTTAT
TGAGTTTTATCTCTTAATAAACCTAAAGTCTCAGAATAATGCCTACTTTA
AAAAAGGCTTTAAACCTTGTACCTTCATTATGATTGTCATTCTCATTGAC
GTACGTACATTCAGGTACGGAAGCCTGATCTGATGATtctgaaaagaaat
tgaaaaatcggtCAGTTAAATTGAACCATCAGCTATTTACACACGTTTGG
TGACAACCCGCatgggcagccccgcaaccgtagtcgtagaatatctccga
tacataatctcacTGTTTACTTTGTCAGTGATCTCACTCAATCTTCGTTT
TATAGTAAAGAAACATAATGACAAAGTGAAGGATTTCAATACTTTAGgag
tacaaacttttgcgagcagaaactttcgcgaggacgaaaaatcgcgaaat
tcgcaacatttactttcgcgaatttaacggaaaaatatttttcgcgagca
taaactttcgcgaacttttcacatgaaaaaatggcttagagggacaaata
cttcttggattggcttgaaacatttgtacTTTGATTTAttataaaagtta
cattttattcaatgtTTGAAGATTTAcagattttcttatttgttaagaat
ttttcgcgagcataaactttcgcgaatggcccttcctagaatttttaaag
acatttactttcgggaaaagggtcaaaatcgcgaaaatcgcgaaagtttc
tgctcacgAAAGTTTGTACTGTACGGCCAAAGTAATTTCTACCAATATGT
TTTGGATATTTCAAGGGTCATAAATCATTAACTTAGTCTGACTCTGACAC
CTTCTTTTCTAGCATCACCCCTTCTCTCAGAAAACCCCAAATTTTGAAAC
CCCTAGCTTCATTTTGAGCAACTGGCCTTTATTATTATGGATAATGCAAG
TTTCTTGAACAAATATGAAAATACTAAACTAAAGTTATGGCTAATTGAAT
ATATTCGACCAAAACTTTAAGCAATGAATTTGTTGACAGACAGAGAGAAC
AAATTACCGTAATTACGGAGATAAAACTGCGCCTCTTCTGGCTTTATATT
CGTCATTTTCATCACCAAAAACTTAATGAATGATTGTTCAAGTACAGTCA
TTCTGTACTTCATGCCGTTCGTACCAAAGTTATCAgtgataatttttttg
agaagTCCAACAATGCTTTCTGCGTGTTCTTGAACGTCAGCCTTTTCGAC
AGATCTGCACCGTTCCCCGACACGAGACATTTCTTTTTGAGATAGCTTTT
TCTCTGAAATAAGGACAGTCTTATAAGTGTCTTACTTACATTATAAAAGT
ATGTTTTCTGTTATTATTCACAGTAAAAAGCTTTGGTGTTTGTGAGAAAC
TTTAGAATCTGATCACCATAGTCCTactattttatatcatttttttattc
ttaaatACATTAGAATAAACCAACGAACCTTCAAGCAAGTCATAGAATTT
TGTACCAAAAATTAGAAATGTGTCAGCATAAGCTTTCTTGGCGAAAGGCT
GGACTCATGTGGCGGAAAAGAAATTAAACAGACCGCTCAATTGAAATTAA
CTCATCTATTCAAAATTATTTGGTAGCCATCAGCTGTGAAATCAACGCTT
ATACTGCTGGTTTCAATataaaagggtcaaaatttctTGATTTGAGTGCT
GAAAACTAATAGTGAAATGTTAACTAATATAGCCTTTAAATTGAACTTAC
ACACCTATATAAGCTCAAAAAAATTCTCACAAAATGTAAATATCCTCTAC
CTTCTGAGGTGTCACTCATTCTCTTTAGCCAAAGGTCTGTTTCCTGTCAC
TGAAAATGAACCATCAGCGACCCAATCCAAGCTTGACTTcgatatttttt
cttgaaaaggtgaaggtttcttgaaaaaaaaaccctttcTGAGATATCGC
TGACATAGTGCTTTACTTAAACCTGTAAAATGAGAATAATGCCAACTATA
GTTATgctttaaagaaaaactttcataaGGAACTCACGTCAACATTAGTA
TGGTGTAAACCATATGTTCCAATTGGAGGAGGGGAAGGTGACGGTGGCGG
TGGTAGTGGTGGGGGCATCAGGGGTCGTGGGATGTTAGCTTGTGTTAGCT
CGTGTTTTTATATCCATGTTTCTTGGAGCGAAAGTAATAGATATAGATGG
GCCATCATAGTTATGCTTTAAAGAAAAACCTTTATATGAAGTTCACGTCA
ACATTAATATAGTGTAAACCATATGTTCCAATTGGAGGAGGGGGAGGTGG
CGGCGGCAGCGGTGGTGGTGGTGGCATCAGGGGTCGTAAAACATTGAAGG
ATGTTGAAGCGGTGGGGGTGGTGGTAGATGGGATGGAGATTGTCTTGGCA
GTGGTGGTAGTGGCGATTGGGGTGGTGGTGGCAAAGCAAATATTATAACG
CATTACTACTAGATTCCGCTCTAGGGAATTCAAACAAGCTGAGGGTCACT
TTTTGGTCGGTAATTCTGCTGAGCGGTTTGAGGGGTCAATTGTAAGGAAT
TTTAAGAGCCTTTCTGACTTCAAGATCGTAAATAGCCAGGCGAATCTTGC
CCAACTTTTACCACCATCATTTTAAAGACTTAATTGATCGCGGCCCTCCG
TGGCTATGGACGAGCTTCCCACTCTTTTCATTCGTTCTAACACTTGCCTT
CTTTCTCGATACACCCTTTTCTTGTTCAACCATTTCTCGCACTATAAAAC
TACGATTGAGCCTCCTTGCAGTCAAAAAAATACTCTCAAGTTGAGCTTGC
ATTTGAGACTATTTGTTAACAAGACAAGACTTCTTTGATTGCTGGTAGTC
AATAGGAATATACTTACTGAAAGTTTTTGTCTACttgtcgttcgttcgtt
cgttcgttcgttcgacgCGAAAGACATGGCGTTGTTGGTAGTCATTTCAC
AGTATTACACGAGGTGTTATCGGACATGGATGGTCGGCAAATGATTTCTA
CCTCACTAAAGAAGAACGACATTGTCTTTTTGCGGTCTGCACATATTGCC
ATGTCTTTTGCAACATTCAGATTCGCTGCGGTGAATTGACCACAGGAAAT
ATACTCCTACAGTCGTTTGAAGTTCTTTGTTTTTGGGATGTTGTCAATGA
ATCCTGGGTGCGAAGTATTGATCATGATGAAAATAGTGAAGCATGTGTCC
AGGGGGCAAGTATTTGTGAGTGTAAAGCCATGGATTACTCCTCCATATCG
TGAAAGAGGGAAACCGTTGTTTGATTTAGAGCGTTTCTTTGCAGGGCGAG
GTATTGGTATTGGTAatgttatgaaaaaatagtttgaaataaccgaaatg
aaaaaaaagcaaTGTCAGAATTTCCTCATGCTCAACTTCAGGTGTTGTCT
TTTAAACTCACTGTAAATtataataacaataacaataaaaattatAATGA
TGATGATAACTAAACTTATACTTTAAGTCGGCTTTGTTGGCGACACTGGT
TATAACCGGTTAATTTATGACGTCGGCTGTCGGGGTTCCATCAGCAATCA
AGCCATTGTCTTTTGTTATGATGTCAGAATTACAAGTGGCAAGTGCATTC
ACCTTACCGGTGACGTAATGTTTGCTCTGATGGATTTGAGTTGATCTCAA
TCTTTCTTGTTTTAGCTCAATatccttttctttttcctccCATAATAGAA
GGATCCCAGAGGATTCCGTTTGCATAGCAACACAGCTTATTCAACGTAAC
GTGATACACAAAAATATCTTCTTCGTGTTCGTATtcaaacaaagaatttt
ttctatGATAGAATACTCACGTTTGCAATTAATTAATAAGGagatataca
atttttttagcACTTTCAATGCTCTGCAAAATCCCTTCCTTATTGTCTTT
GTTGCTGCTTGCTGCTTACCATCTTTCTTTTTGATTGCCTTCTTTAGATC
TTCTATTTTGTTGAAGTCATTACTTTCAGTAATTTGTGATTTTAGctgat
taatcaatttttgcTTTGATCTAGGGTCGTCACTCTCCCTTTTCCAAAGG
TCATCAGAGGGTTCGTCAGGCTTGGCTGCGTCGCTGGGTTGAGTGGCGTC
CTCCTTTGGGTTGGGGGCGTTCGTCTGGTCTGTAGATTGTACGTTTTCGG
ACAGGTCGAATTCAAGATGGCGTCTTTCTGTACACACTGCTTTGAATGAT
TCTCCctcaaaatcgagaaaaaagtCGTCTTTAGTTTGAGTATGGATACC
CAAAAACCATCCTCCCACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048726-exon-scaffold_146-1491911889:49467..50076 | TCONS_00048726-exon-scaffold_146-1491911889:49467..50076 | Clytia hemisphaerica | exon |
| TCONS_00048726-exon-scaffold_146-1510915933:49467..50076 | TCONS_00048726-exon-scaffold_146-1510915933:49467..50076 | Clytia hemisphaerica | exon |
| TCONS_00048726-exon-scaffold_146-1575043694:49467..50076 | TCONS_00048726-exon-scaffold_146-1575043694:49467..50076 | Clytia hemisphaerica | exon |
| TCONS_00048726-exon-scaffold_146-1491911889:54669..56687 | TCONS_00048726-exon-scaffold_146-1491911889:54669..56687 | Clytia hemisphaerica | exon |
| TCONS_00048726-exon-scaffold_146-1510915933:54669..56687 | TCONS_00048726-exon-scaffold_146-1510915933:54669..56687 | Clytia hemisphaerica | exon |
| TCONS_00048726-exon-scaffold_146-1575043694:54669..56687 | TCONS_00048726-exon-scaffold_146-1575043694:54669..56687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:49467..56687 + |
Blast
The following BLAST results are available for this feature:
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