TCONS_00048811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048811
Unique NameTCONS_00048811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048811 ID=TCONS_00048811|Name=TCONS_00048811|organism=Clytia hemisphaerica|type=transcript|length=355bp
ATCGTCTACTAGTGGAAATGGTGATTAGGGCTAACGCTGGACCAGTGAGG
TCTTTGGGCGAATCGTCTACCAGTGGAAATGGTGATTAGGGCTAACGTTG
GATCAGTGAGGGCTTTGGGCGAATCGTCTACTAGTGGAAATGGTGATTAG
GGCTAACGTTGGATCAGTGAGGGCTTTGGGCGAATCGTCTACTAGTGGAA
ATGGTGGTTAGGGCAAACGCTGGACCAGTGAGGGCTTTGGGCGAATCGTC
TACTAGTGAGAATGGTGATTAGGGCTAACGTTGGATCAGTGAGGGCTTTG
GGCGAATCGTCTACTAGTGGAAATGGTGATTAGGGCTAACGTTGGATCAG
TGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_146:466811..467165

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048811 ID=TCONS_00048811|Name=TCONS_00048811|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at scaffold_146:466811..467165 (Clytia hemisphaerica)
CCTCACTGATCCAACGTTAGCCCTAATCACCATTTCCACTAGTAGACGAT
TCGCCCAAAGCCCTCACTGATCCAACGTTAGCCCTAATCACCATTCTCAC
TAGTAGACGATTCGCCCAAAGCCCTCACTGGTCCAGCGTTTGCCCTAACC
ACCATTTCCACTAGTAGACGATTCGCCCAAAGCCCTCACTGATCCAACGT
TAGCCCTAATCACCATTTCCACTAGTAGACGATTCGCCCAAAGCCCTCAC
TGATCCAACGTTAGCCCTAATCACCATTTCCACTGGTAGACGATTCGCCC
AAAGACCTCACTGGTCCAGCGTTAGCCCTAATCACCATTTCCACTAGTAG
ACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031030XLOC_031030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048811-exon-scaffold_146-1491911889:466811..467165TCONS_00048811-exon-scaffold_146-1491911889:466811..467165Clytia hemisphaericaexon
TCONS_00048811-exon-scaffold_146-1510915933:466811..467165TCONS_00048811-exon-scaffold_146-1510915933:466811..467165Clytia hemisphaericaexon
TCONS_00048811-exon-scaffold_146-1575043694:466811..467165TCONS_00048811-exon-scaffold_146-1575043694:466811..467165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:466811..467165 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.655393	0	0.312412	0.584953	0	0.25364	0	0.161835	0.323221	0	0	0	0	0	0	0	0	0	0	0	0.260896	0.465687	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top