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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049222 ID=TCONS_00049222|Name=TCONS_00049222|organism=Clytia hemisphaerica|type=transcript|length=2044bp
cgtaaaacaaaaaatttaacaatGCTATGTATAAAATAAAAGTACAAAAT
AATTTGAGAGGGatactaaaaaaaaaacttttaaatatacaggcccttat
tttataagaacaatttatacgaaaacgaggctgaaaattggccaaaacct
aaaaacTAATTTAAAGAAATCTGAccctcaaatttcaaaaattattgatt
ttatCAGACTTTAAACctattttaagttttcaagtaaagaaactaagcgt
attaagaacattgtaagaataATAAAATCCAGGCCTAAAGATTAAGAACA
ACTCAGCTCAGGCCAATATTTACTGGTACTTatgaaaaaaagcgtgtatt
cattTTTTTGGTATAGTTCTGGTTCAGACCTaagctacgtcatatcttcc
tttgtttcgagtgtaaaactcctactcCTACAAGAGTAAGACCTAAAAGC
CTGGAGTTGTATATTGTGTAGACTAGTTCAGACCCTCAAGCTCTGTATAA
TGTTCGAAAAATAATGACTTTGAAAAAACGAAGGGTAGAAAGATTTTGAA
CAAGTTTTCGTAGAGAAGGATGACACCAATAGAATGAAAAAGTTTTACAT
CTACAATGTGGCAATTTCTTGAAGAATCCCTCCCCCCTAATATCAGTGTT
GATgtgagctttttctgagcttGGTGGCAGTCTTTCAACCAATCGACATT
GATACTAGGGGGGGGGAATTCTTGCCACAATACTTAGTCACAGGtaGtag
caaaattttagaaaaagaaaaaacaaataaaacttGTTGAAAATATAATA
TGAAAAAGGGGGAtgttataaaaacaattttattttacaatACAATGGTA
ATATTAACAGTTATAAAGAAATAGGGAGTGTCTGTCAGTGACAAATATTC
CCTGGTTATAAATAGAAGTGAATTGTGGAGCAAGATACCGGAAAATTTTC
ATGATGTCTCTTTTtgattgtattgtattgtatttttcGACCAATGCGAA
AGGACAATCATCAACACAGTCgagtctccgtaactcgaacacGAAGGGGT
GGGGTTGGTTAGTGATCGGTTTATAGAGTGTTCAAGAGAAGATTTGAGCT
ATTGGAGTTCGAGCTAAGGAGAGTTGACtgtgaaaattcaatatttgtCG
ACGTCGCAGCATTCGAAAAGCAACGCCAATCATTGTCATAATGTTGAAAC
AACATCATGTTGCAACTGCCATTATTAATGAGTTCTGGTTTGAAATTTCC
CCTCCTCGTGTATTTTGGGTAGGATTATTAATCGTGGTTTCAGTTAGAAC
CAACTGTTTTTATCTCTCTGTTTAATTTTGCATGTGGCATGTATTTCTTT
CATAATTGCCTTTTGAAAATATGTTACCGATTGGGAATCGATTTTCTCTT
CATGAATCTTACCAAAGCTATCCACAAACTACCACATGGATACATTTTGC
ATTTTCAGAACACAACATGATTGTTGAATTTCACAGGCTAAAataaatga
ttatttttaactATGCTTTCGCCTCTTGCTAGCCCGTAAATCTTTTTCAT
CTGGATAACGTAAATTCACTTTCGTTACCATTCGGATCCATTTTATATGT
TTATCAATTTTAGTAAACATGTCATAACTGGTCATATGTTTTTTACATGT
ATTCAAATCTTTATGTCCCCAACTCAAAATACCACCCAAATACCATTTCC
TCTTATTAGGGTCAAAAGTTACTAGGGCACTTCCGGCAAGAATTTTACAC
CGATCATTCGTACCGACGGTAGCTTCCGTACACATAAGTTCAGTAGGGAC
TATATGTTTTCGTCCGTTTGATGATCCCCAGACGTCGCGTTGTATATTAC
TGTGCGTTGCTTGAACGTATTTTTGACACGTAGCTTGATCGACGACTTTG
ACGCAACGGTCGGTTAAATGACGGTCACCGTTACTATACCAACCAATCGT
GGCGACGTTTGTGACGTTATTAAATATATGACGATATCTGAAAAGAACAG
AGATATAATTGCTATAAAACTGTAAGCTTTCTGTAAGCCTTTAA Run BLAST on NCBI transcript from alignment at scaffold_154:366534..370451+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049222 ID=TCONS_00049222|Name=TCONS_00049222|organism=Clytia hemisphaerica|type=transcript|length=3918bp|location=Sequence derived from alignment at scaffold_154:366534..370451+ (Clytia hemisphaerica)
cgtaaaacaaaaaatttaacaatGCTATGTATAAAATAAAAGTACAAAAT
AATTTGAGAGGGatactaaaaaaaaaacttttaaatatacaggcccttat
tttataagaacaatttatacgaaaacgaggctgaaaattggccaaaacct
aaaaacTAATTTAAAGAAATCTGAccctcaaatttcaaaaattattgatt
ttatCAGACTTTAAACctattttaagttttcaagtaaagaaactaagcgt
attaagaacattgtaagaataATAAAATCCAGGCCTAAAGATTAAGAACA
ACTCAGCTCAGGCCAATATTTACTGGTACTTatgaaaaaaagcgtgtatt
cattTTTTTGGTATAGTTCTGGTTCAGACCTaagctacgtcatatcttcc
tttgtttcgagtgtaaaactcctactcCTACAAGAGTAAGACCTAAAAGC
CTGGAGTTGTATATTGTGTAGACTAGTTCAGACCCTCAAGCTCTGTATAA
TGTTCGAAAAATAATGACTTTGAAAAAACGAAGGGTAGAAAGATTTTGAA
CAAGTTTTCGTAGAGAAGGATGACACCAATAGAATGAAAAAGTTTTACAT
CTACAATGTGGCAATTTCTTGAAGAATCCCTCCCCCCTAATATCAGTGTT
GATgtgagctttttctgagcttGGTGGCAGTCTTTCAACCAATCGACATT
GATACTAGGGGGGGGGAATTCTTGCCACAATACTTAGTCACAGGtagcaa
aattttagaaaaagaaaaaacaaataaaacttGTTGAAAATATAATATGA
AAAAGGGGGAtgttataaaaacaattttattttacaatACAATGGTAATA
TTAACAGTTATAAAGAAATAGGGAGTGTCTGTCAGTGACAAATATTCCCT
GGTTATAAATAGAAGTGAATTGTGGAGCAAGATACCGGAAAATTTTCATG
ATGTCTCTTTTtgattgtattgtattgtatttttcGACCAATGCGAAAGG
ACAATCATCAACACAGTCgagtctccgtaactcgaacacGAAGGGGTGGG
GTTGGTTAGTGATCGGTTTATAGAGTGTTCAAGAGAAGATTTGAGCTATT
GGAGTTCGAGCTAAGGAGAGTTGACtgtgaaaattcaatatttgtCGACG
TCGCAGCATTCGAAAAGCAACGCCANCATGCCTAAATCAATCGCTTTCCA
AATTTAATGGCAAAAGGACATTTGAATTGAAAGTAACGTCAAAACATCTA
TGGGGCTTCCATATCTGTCAAATGTCATTCCTATTGTTCAAACTTATGGA
GAAtctcaaacaaaaataaataaattttattattaGATTCTATATTTGAG
CTGTTTTTTGACAATGCCAGAGCTCGCCTTGAGACTGTTCAGTATTTAAT
AAAATCATTGGTCATGAAAatttactttataaaaatgtaCATCTTACGAA
CAGGGGTACTCCATTGACTCCATTTAAGATTAAAGCAGTCCtctcatttt
catttgtaatgaaaaaattcattggaaagataattttgagtgaATGTATc
gttgaaatttcgaaaataaagacgaaaaaagagaaaaatttaaaggcttt
ctgaaattttcaatgtagtgaaaaatttgaacttctctaattttaaattt
tttaaagcttttaaatGGTATGATCTTTTGTTATGGGCTTTTTTCAGATC
AAGAATCACATAATCACATGTTTTAAATTACAAAAGATAGgcaaaatgaa
gttttttttaatacctCAAAATATCGACTCAATACcttaaaatttatatt
ttttttgaaaaatattttatcattaaaagaaacttttttataatttattt
acaatttttataaaaataagacaaacccgtaaaacaaaaaatttaacaat
GCTATGTATAAAATAAAAGTACAAAATAATTTGAGAGGGatactaaaaaa
aaaacttttaaatatacaggcccttattttataagaacaatttatacgaa
aacgaggctgaaaattggccaaaacctaaaaacTAATTTAAAGAAATCTG
AccctcaaatttcaaaaattattgattttatCAGACTTTAAACctatttt
aagttttcaagtaaagaaactaagcgtattaagaacattgtaagaataAT
AAAATCCAGGCCTAAAGATTAAGAACAACTCAGCTCAGGCCAATATTTAC
TGGTACTTatgaaaaaaagcgtgtattcattTTTTTGGTATAGTTCTGGT
TCAGACCTaagctacgtcatatcttcctttgtttcgagtgtaaaactcct
actcCTACAAGAGTAAGACCTAAAAGCCTGGAGTTGTATATTGTGTAGAC
TAGTTCAGACCCTCAAGCTCTGTATAATGTTCGAAAAATAATGACTTTGA
AAAAACGAAGGGTAGAAAGATTTTGAACAAGTTTTCGTAGAGAAGGATGA
CACCAATAGAATGAAAAAGTTTTACATCTACAATGTGGCAATTTCTTGAA
GAATCCCTCCCCCCTAATATCAGTGTTGATgtgagctttttctgagcttG
GTGGCAGTCTTTCAACCAATCGACATTGATACTAGGGGGGGGGAATTCTT
GCCACAATACTTAGTCACAGGtagcaaaattttagaaaaagaaaaaacaa
ataaaacttGTTGAAAATATAATATGAAAAAGGGGGAtgttataaaaaca
attttattttacaatACAATGGTAATATTAACAGTTATAAAGAAATAGGG
AGTGTCTGTCAGTGACAAATATTCCCTGGTTATAAATAGAAGTGAATTGT
GGAGCAAGATACCGGAAAATTTTCATGATGTCTCTTTTtgattgtattgt
attgtatttttcGACCAATGCGAAAGGACAATCATCAACACAGTCgagtc
tccgtaactcgaacacGAAGGGGTGGGGTTGGTTAGTGATCGGTTTATAG
AGTGTTCAAGAGAAGATTTGAGCTATTGGAGTTCGAGCTAAGGAGAGTTG
ACtgtgaaaattcaatatttgtCGACGTCGCAGCATTCGAAAAGCAACGC
CAATCATTGTCATAATGTTGAAACAACATCATGTTGCAACTGCCATTATT
AATGAGTTCTGGTTTGAAATTTCCCCTCCTCGTGTATTTTGGGTAGGATT
ATTAATCGTGGTTTCAGTTAGAACCAACTGTTTTTATCTCTCTGTTTAAT
TTTGCATGTGGCATGTATTTCTTTCATAATTGCCTTTTGAAAATATGTTA
CCGATTGGGAATCGATTTTCTCTTCATGAATCTTACCAAAGCTATCCACA
AACTACCACATGGATACATTTTGCATTTTCAGAACACAACATGATTGTTG
AATTTCACAGGCTAAAataaatgattatttttaactATGCTTTCGCCTCT
TGCTAGCCCGTAAATCTTTTTCATCTGGATAACGTAAATTCACTTTCGTT
ACCATTCGGATCCATTTTATATGTTTATCAATTTTAGTAAACATGTCATA
ACTGGTCATATGTTTTTTACATGTATTCAAATCTTTATGTCCCCAACTCA
AAATACCACCCAAATACCATTTCCTCTTATTAGGGTCAAAAGTTACTAGG
GCACTTCCGGCAAGAATTTTACACCGATCATTCGTACCGACGGTAGCTTC
CGTACACATAAGTTCAGTAGGGACTATATGTTTTCGTCCGTTTGATGATC
CCCAGACGTCGCGTTGTATATTACTGTGCGTTGCTTGAACGTATTTTTGA
CACGTAGCTTGATCGACGACTTTGACGCAACGGTCGGTTAAATGACGGTC
ACCGTTACTATACCAACCAATCGTGGCGACGTTTGTGACGTTATTAAATA
TATGACGATATCTGAAAAGAACAGAGATATAATTGCTATAAAACTGTAAG
CTTTCTGTAAGCCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049222-exon-scaffold_154-1491911889:366534..367279 | TCONS_00049222-exon-scaffold_154-1491911889:366534..367279 | Clytia hemisphaerica | exon |
| TCONS_00049222-exon-scaffold_154-1510915933:366534..367279 | TCONS_00049222-exon-scaffold_154-1510915933:366534..367279 | Clytia hemisphaerica | exon |
| TCONS_00049222-exon-scaffold_154-1575043694:366534..367279 | TCONS_00049222-exon-scaffold_154-1575043694:366534..367279 | Clytia hemisphaerica | exon |
| TCONS_00049222-exon-scaffold_154-1491911889:369154..370451 | TCONS_00049222-exon-scaffold_154-1491911889:369154..370451 | Clytia hemisphaerica | exon |
| TCONS_00049222-exon-scaffold_154-1510915933:369154..370451 | TCONS_00049222-exon-scaffold_154-1510915933:369154..370451 | Clytia hemisphaerica | exon |
| TCONS_00049222-exon-scaffold_154-1575043694:369154..370451 | TCONS_00049222-exon-scaffold_154-1575043694:369154..370451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:366534..370451 + |
Blast
The following BLAST results are available for this feature:
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