TCONS_00050449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050449
Unique NameTCONS_00050449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050449 ID=TCONS_00050449|Name=TCONS_00050449|organism=Clytia hemisphaerica|type=transcript|length=2488bp
TTGAAAGGAAGAATGTTTTTAAGCTCAAAAGAGTGAGGACTTATAAGCCA
ACATATAAGGGGTAGGCCAATTTTGCAAATAGATTTATAGAGAGACAGAC
CACTCAGAAAGTTTAAGCTTTATTCTACGAGAATCAAATTATCTTTCATT
ACAATTATTTCTatagaaaaaagtaaaatgagTCAATGTTTAAGCCTTAa
tgagaaaaaatctcaaaaatgtttCGAAGATTTGAACTGTTTTGAAACAT
GTGGAAAAAATCAAGTATGCACAATATTTTATCGAAACATGACTGGAGAA
CTTCAGCCTGGCTTTGCTGGCTGTTGGGAGAAAGAAGGCAAGGGGTTTTG
TAATCCAGACCATTTGACACATATTGACTGCCACCTTCGACACAAGGGAA
AGCATAATGGCATCGATTCTTTTATGTGTTGCTGTACTGGAAATAGATGC
AACAAAAATCTTATACAGAATGCTACATTGATGACACCCACTCCCAGCAC
ATCTACTGAAACAACCTTAATGACCGAGTTACCAAAACATCCAGAAAGCA
AAACATTACAATATTCAATTCCTCCTGTTATATGCAGCATTTTCGTTGTC
ATTGCACTATTGTATTTTTGGAAACGCCATAAACAACGAATACCGTCTGG
TCATCCCCTGATACTTTATCAACCACCAACGCCTATTATCACCAAACCTG
TTCAATGGGACCGAGTTGTAAATGTGGGACAGTTTGGTTGTGTTTGGAAG
GCTACTTACAACAATAATGAAGTAGCCGTTAAAATTATTCAAGCTCACGA
AAAATCTTATTGGATTACAGAAAAGACAATGTATCAATATAATCTTGTTc
atgataatattttgaaattttacagtgCTGAGAAAAGACTATCAGATTCC
AATATGATTCAATATTGGATTGTTACGCAGTATCATGCTAACGGTTCATT
AGCTGACTATTTGTCAAGCAATACTCTAGATTGGACTTTAATGTTACAGT
TAGCCATTTCAATGACTCAAGGGATTGCTTATCTTCACGAGGAAATTATG
ACAGAAACTATACGAAAACCCATCATAGCTCATCGGGATATTAAAAGTCG
TAATGTTTTAGTGAGAGACAATTTAACATGTTGTATAAGTGATTTTGGAT
CAGCATGCCAATTCTCGGAAAACACTGATAAAGAAGAAATCAAGGGACAG
gTTGGTACCAAACGGTATATGGCACCTGAAGTTCTAGAAGGCGCAGTTGC
TTTTCAAACAGAATCATATAAAAGCATTGACTGTTATTCACTTAGTCTCA
TATTGTGGGAGCTTCTCTCTCGTTGCGATACAGGGCAAGTACCAGCAGAA
CCTGTATACCAATTACCTTTCGAAGCAGAAGTTGGAACAAATCCTACACT
AGAAGAATTGAGGGCTTGTGTTTCTGAGCAAGGAATGAGACCGAAATTGA
AAGCTGGTTGGACTAGAGATCCTAAAGTAACTGAGCTCTGCAACACCATC
GAAGAAGGCTGGGACAAAGAAGGGGATGCACGCCTTAGTGCACCAGGTGT
CCTCCAACGTTTGAAGGAGTTACAACTGGCAGCTGAAGGGGGAGAAGTGA
ACCCTACACAGGCGACCAGAATCAATATCCCACCTTATGGAGATGGTGAT
TCAACTCTTGGTGGAAATTCTACTGGCGTCTCATTCCTATCAGGATCAAC
CTCGAGTTGCGGGAAGGAGCCTTTGATTGTTGATCTTTCTTAGATTGGGA
GAGTTGAATGTCATCCTTCTTGCTGTATAGATTTCAATAAATAAACACTT
ATTCCTTTTTGCCTTTTCAACTTTTAACGCTGATTATCTTtcaatatgaa
atttttaaGGGTTCGAGAAATTTGAAGAATAAAAACGAGGCACTTACTTT
TTAGTGAGGGACGATTTTCAAATGTTCAAGTACAGGACCATGAAAAGCTT
GATGAAATATTTCGTTTGTTCTGTTTGGGTTTTCGTTTTATGATTTtcta
aattatgtttttttctgTGAAATCGGTGAAATCTAGCAGTGGTTTTTTAA
TGCACAAGTAGTCTTTCTTATTATCGTTGTTAACAGAGTGTGGCCTAAAT
AAGgaaaacatttctaaaaatactttgaagttttttttcgaaaaaaaaaa
ttgacgatgATGAAAGGATATGAAATTATTGCTCTGGATATGTCAATTGG
AATAGTTTTTTAAATCGTGTTTTATACTGCAGTAGTTTTTTCAACCTACT
TGCCactttttagtttagttttgtattttgtttttaaccCTTGAGCCTTT
ATGATGATTAATTTCcccctttttataagaatcagctTTTGAGGCTcatc
tgtttttattttgttgttatttttatcATCGTAtgcttatctttttcttt
ttatttattgctggttgactctataaaatagtaaaaactggtaaaaaacg
acaaaaaaacagccttttgtcgatcaaccagcaataaa
Run BLAST on NCBI

protein sequence of TCONS_00050449-protein

>TCONS_00050449-protein ID=TCONS_00050449-protein|Name=TCONS_00050449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MSQCLSLNEKKSQKCFEDLNCFETCGKNQVCTIFYRNMTGELQPGFAGCW
EKEGKGFCNPDHLTHIDCHLRHKGKHNGIDSFMCCCTGNRCNKNLIQNAT
LMTPTPSTSTETTLMTELPKHPESKTLQYSIPPVICSIFVVIALLYFWKR
HKQRIPSGHPLILYQPPTPIITKPVQWDRVVNVGQFGCVWKATYNNNEVA
VKIIQAHEKSYWITEKTMYQYNLVHDNILKFYSAEKRLSDSNMIQYWIVT
QYHANGSLADYLSSNTLDWTLMLQLAISMTQGIAYLHEEIMTETIRKPII
AHRDIKSRNVLVRDNLTCCISDFGSACQFSENTDKEEIKGQVGTKRYMAP
EVLEGAVAFQTESYKSIDCYSLSLILWELLSRCDTGQVPAEPVYQLPFEA
EVGTNPTLEELRACVSEQGMRPKLKAGWTRDPKVTELCNTIEEGWDKEGD
ARLSAPGVLQRLKELQLAAEGGEVNPTQATRINIPPYGDGDSTLGGNSTG
VSFLSGSTSSCGKEPLIVDLS
Run BLAST on NCBI

transcript from alignment at scaffold_172:36299..40253+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050449 ID=TCONS_00050449|Name=TCONS_00050449|organism=Clytia hemisphaerica|type=transcript|length=3955bp|location=Sequence derived from alignment at scaffold_172:36299..40253+ (Clytia hemisphaerica)
TTGAAAGGAAGAATGTTTTTAAGCTCAAAAGAGTGAGGACTTATAAGCCA
ACATATAAGGGGTAGGCCAATTTTGCAAATAGATTTATAGAGAGACAGAC
CACTCAGAAAGTTTAAGCTTTATTCTACGAGAATCAAATTATCTTTCATT
ACAATTATTTCTatagaaaaaagtaaaatgagTCAATGTTTAAGCCTTAa
tgagaaaaaatctcaaaaatgtttCGAAGATTTGAACTGTTTTGAAACAT
GTGGAAAAAATCAAGTATGCACAATATTTTATCGAAACATGACTGGAGAA
CTTCAGCCTGGCTTTGCTGGCTGTTGGGAGAAAGAAGGCAAGGGGTTTTG
TAATCCAGACCATTTGACACATATTGACTGCCACCTTCGACACAAGGGAA
AGCATAATGGCATCGATTCTTTTATGTGTTGCTGTACTGGAAATAGATGC
AACAAAAATCTTATACAGAATGCTACATTGATGACACCCACTCCCAGCAC
ATCTACTGAAACAAGTAAGAATTTTATTATCTATACAATTATGAATGact
tttttaaaggtttgggcGTTTTTTAACGTTCTGTTAGTCATTTGTAGATT
TTTTGTGTCATTGCTTTAGTCGTTTGTTCTCTATTTTATTTTCACAATGC
GAAGGTATGAAATTGATATTACTTTTGCAAGACTTCTTTTGCTGAAATTC
TTTTACTTTGCTTGGAAATTTCCGCAGATTTACCTGGATTTACAGTAAAA
CTGTATTTTCCATAACTAATCTTTGTGGTATTTATCCAAGACCACGGAAA
TTGAGTCCTCGAAAATTAGTTTTCTTAAGGTATATTTTTAGCATTTAGTA
AAATTAATTGATCCAAGTCTTATCTCTTATTATTTTCAGCCTTAATGACC
GAGTTACCAAAACATCCAGAAAGCAAAACATTACAATATTCAATTCCTCC
TGTTATATGCAGCATTTTCGTTGTCATTGCACTATTGTATTTTTGGAAAC
GCCATAAACAACGAATACCGTCTGGTCATCCCCTGATACTTTATCAACCA
CCAACGCCTATTATCACCAAACCTGTTCAATGGGACCGAGTTGTAAATGT
GGGACAGTTTGGTTGTGTTTGGAAGGCTACTTACAACAATAATGAAGTAG
CCGTTAAAATTATTCAAGCTCACGAAAAATCTTATTGGATTACAGAAAAG
ACAATGTATCAATATAATCTTGTTcatgataatattttgaaattttacag
tgCTGAGAAAAGACTATCAGATTCCAATATGATTCAATATTGGATTGTTA
CGCAGTATCATGCTAACGGTTCATTAGCTGACTATTTGTCAAGCAATACT
CTAGATTGGACTTTAATGTTACAGTTAGCCATTTCAATGACTCAAGGGAT
TGCTTATCTTCACGAGGAAATTATGACAGAAACTATACGAAAACCCATCA
TAGCTCATCGGGATATTAAAAGTCGTAATGTTTTAGTGAGAGACAATTTA
ACATGTTGTATAAGTGATTTTGGATCAGCATGCCAATTCTCGGAAAACAC
TGATAAAGAAGAAATCAAGGGACAGGTATCATACCATTTCTTTATGTGTT
CATTTTTTACCCATTGAATCAAATGGTTTGCATATTTCCACACATGTATT
CTTCAAACCCAATCAATAGACTTCTTCAAGCAAAGTCGCTTCTAAAGTTA
TAGCTAAGAATTCTTGCAAAGTGTCAGCTATTACTAAATGTGTGAAGCTG
GTCTTACAAAGACGTCAGTCGAGTTATTACAATTCATTCGAAGACGTGCT
gctatttttacatttttgatactcattttcttcttcatttaaggTTGGTA
CCAAACGGTATATGGCACCTGAAGTTCTAGAAGGCGCAGTTGCTTTTCAA
ACAGAATCATATAAAAGCATTGACTGTTATTCACTTAGTCTCATATTGTG
GGAGCTTCTCTCTCGTTGCGATACAGGGCAAGGTAGCTTGTTTAAAGTTT
GCTTTTCTGTGCGGTTTTCTGAATTCTATACTGAGATTAGCATTAGGTTG
TCTCTGTAACGTgtaataaaaatggaaattcaaaatttaaccaCAAGCTA
GACAATCGAAAAATTGCAATTTCATTTCAGTATTTTCCAGCAAAAAAGTT
AATCTAGGTTAATTTTGTTTCAAAAATTAGAGGgcattttttttattggc
tCCTATCTTGAACCTGTGTATATCCTTCTTTaccttttgttttcatttct
attgttttagTACCAGCAGAACCTGTATACCAATTACCTTTCGAAGCAGA
AGTTGGAACAAATCCTACACTAGAAGAATTGAGGGCTTGTGTTTCTGAGC
AAGGAATGAGACCGAAATTGAAAGCTGGTTGGACTAGAGATCCTGTAAGT
TTATTTTAGTTCTAGTATCTCAGGGTTTTTTGACCAGGTTCACTCATTAT
CTGACGGGGCTTAAAATTAGGTAATTTTTAGCAACTTTTTTCACCAGGTT
CTCATCGGGTTTCTGATATATGTTGGGGAGTTTTtgagaacaaaaaaaaa
caaacaaaaaaattcatttaagaATGATTTGTTATGtcatttgaattttc
aaaatctataaTTCATTTATGCTAATGtttcaaagatttaaaaagaaact
tctGCACATTAAAGGGTCGGTGAGTGGCGATATGAACTTAGTATTGTTCG
GATTAATCAATCATGAACTATTAACAGCTtcacagattttttaatttatg
tATCTAATTTGTCTATCAGAAAGATCCATTCACTGCTAACTTGacgaatt
ttcttttcaattgaaTGACATATTTTTCCACAACAACTAAATCAAAACGT
ACTACTTAGAGTTTGAACAACTTAGTATTAGCGCACTTGCAcaaataata
agaaaattattttgagaaattctctCACCTTTTCTTACAGAAAGTAACTG
AGCTCTGCAACACCATCGAAGAAGGCTGGGACAAAGAAGGGGATGCACGC
CTTAGTGCACCAGGTGTCCTCCAACGTTTGAAGGAGTTACAACTGGCAGC
TGAAGGGGGAGAAGTGAACCCTACACAGGCGACCAGAATCAATATCCCAC
CTTATGGAGATGGTGATTCAACTCTTGGTGGAAATTCTACTGGCGTCTCA
TTCCTATCAGGATCAACCTCGAGTTGCGGGAAGGAGCCTTTGATTGTTGA
TCTTTCTTAGATTGGGAGAGTTGAATGTCATCCTTCTTGCTGTATAGATT
TCAATAAATAAACACTTATTCCTTTTTGCCTTTTCAACTTTTAACGCTGA
TTATCTTtcaatatgaaatttttaaGGGTTCGAGAAATTTGAAGAATAAA
AACGAGGCACTTACTTTTTAGTGAGGGACGATTTTCAAATGTTCAAGTAC
AGGACCATGAAAAGCTTGATGAAATATTTCGTTTGTTCTGTTTGGGTTTT
CGTTTTATGATTTtctaaattatgtttttttctgTGAAATCGGTGAAATC
TAGCAGTGGTTTTTTAATGCACAAGTAGTCTTTCTTATTATCGTTGTTAA
CAGAGTGTGGCCTAAATAAGgaaaacatttctaaaaatactttgaagttt
tttttcgaaaaaaaaaattgacgatgATGAAAGGATATGAAATTATTGCT
CTGGATATGTCAATTGGAATAGTTTTTTAAATCGTGTTTTATACTGCAGT
AGTTTTTTCAACCTACTTGCCactttttagtttagttttgtattttgttt
ttaaccCTTGAGCCTTTATGATGATTAATTTCcccctttttataagaatc
agctTTTGAGGCTcatctgtttttattttgttgttatttttatcATCGTA
tgcttatctttttctttttatttattgctggttgactctataaaatagta
aaaactggtaaaaaacgacaaaaaaacagccttttgtcgatcaaccagca
ataaa

Coding sequence (CDS) from alignment at scaffold_172:36299..40253+

>TCONS_00050449 ID=TCONS_00050449|Name=TCONS_00050449|organism=Clytia hemisphaerica|type=CDS|length=7830bp|location=Sequence derived from alignment at scaffold_172:36299..40253+ (Clytia hemisphaerica)
atgagTCAATGTTTAAGCCTTAatgagaaaaaatctcaaaaatgtttCGA
AGATTTGAACTGTTTTGAAACATGTGGAAAAAATCAAGTATGCACAATAT
TTTATCGAAACATGACTGGAGAACTTCAGCCTGGCTTTGCTGGCTGTTGG
GAGAAAGAAGGCAAGGGGTTTTGTAATCCAGACCATTTGACACATATTGA
CTGCCACCTTCGACACAAGGGAAAGCATAATGGCATCGATTCTTTTATGT
GTTGCTGTACTGGAAATAGATGCAACAAAAATCTTATACAGAATGCTACA
TTGATGACACCCACTCCCAGCACATCTACTGAAACAACCTTAATGACCGA
GTTACCAAAACATCCAGAAAGCAAAACATTACAATATTCAATTCCTCCTG
TTATATGCAGCATTTTCGTTGTCATTGCACTATTGTATTTTTGGAAACGC
CATAAACAACGAATACCGTCTGGTCATCCCCTGATACTTTATCAACCACC
AACGCCTATTATCACCAAACCTGTTCAATGGGACCGAGTTGTAAATGTGG
GACAGTTTGGTTGTGTTTGGAAGGCTACTTACAACAATAATGAAGTAGCC
GTTAAAATTATTCAAGCTCACGAAAAATCTTATTGGATTACAGAAAAGAC
AATGTATCAATATAATCTTGTTcatgataatattttgaaattttacagtg
CTGAGAAAAGACTATCAGATTCCAATATGATTCAATATTGGATTGTTACG
CAGTATCATGCTAACGGTTCATTAGCTGACTATTTGTCAAGCAATACTCT
AGATTGGACTTTAATGTTACAGTTAGCCATTTCAATGACTCAAGGGATTG
CTTATCTTCACGAGGAAATTATGACAGAAACTATACGAAAACCCATCATA
GCTCATCGGGATATTAAAAGTCGTAATGTTTTAGTGAGAGACAATTTAAC
ATGTTGTATAAGTGATTTTGGATCAGCATGCCAATTCTCGGAAAACACTG
ATAAAGAAGAAATCAAGGGACAGgTTGGTACCAAACGGTATATGGCACCT
GAAGTTCTAGAAGGCGCAGTTGCTTTTCAAACAGAATCATATAAAAGCAT
TGACTGTTATTCACTTAGTCTCATATTGTGGGAGCTTCTCTCTCGTTGCG
ATACAGGGCAAGTACCAGCAGAACCTGTATACCAATTACCTTTCGAAGCA
GAAGTTGGAACAAATCCTACACTAGAAGAATTGAGGGCTTGTGTTTCTGA
GCAAGGAATGAGACCGAAATTGAAAGCTGGTTGGACTAGAGATCCTAAAG
TAACTGAGCTCTGCAACACCATCGAAGAAGGCTGGGACAAAGAAGGGGAT
GCACGCCTTAGTGCACCAGGTGTCCTCCAACGTTTGAAGGAGTTACAACT
GGCAGCTGAAGGGGGAGAAGTGAACCCTACACAGGCGACCAGAATCAATA
TCCCACCTTATGGAGATGGTGATTCAACTCTTGGTGGAAATTCTACTGGC
GTCTCATTCCTATCAGGATCAACCTCGAGTTGCGGGAAGGAGCCTTTGAT
TGTTGATCTTTCTTAGatgagTCAATGTTTAAGCCTTAatgagaaaaaat
ctcaaaaatgtttCGAAGATTTGAACTGTTTTGAAACATGTGGAAAAAAT
CAAGTATGCACAATATTTTATCGAAACATGACTGGAGAACTTCAGCCTGG
CTTTGCTGGCTGTTGGGAGAAAGAAGGCAAGGGGTTTTGTAATCCAGACC
ATTTGACACATATTGACTGCCACCTTCGACACAAGGGAAAGCATAATGGC
ATCGATTCTTTTATGTGTTGCTGTACTGGAAATAGATGCAACAAAAATCT
TATACAGAATGCTACATTGATGACACCCACTCCCAGCACATCTACTGAAA
CAACCTTAATGACCGAGTTACCAAAACATCCAGAAAGCAAAACATTACAA
TATTCAATTCCTCCTGTTATATGCAGCATTTTCGTTGTCATTGCACTATT
GTATTTTTGGAAACGCCATAAACAACGAATACCGTCTGGTCATCCCCTGA
TACTTTATCAACCACCAACGCCTATTATCACCAAACCTGTTCAATGGGAC
CGAGTTGTAAATGTGGGACAGTTTGGTTGTGTTTGGAAGGCTACTTACAA
CAATAATGAAGTAGCCGTTAAAATTATTCAAGCTCACGAAAAATCTTATT
GGATTACAGAAAAGACAATGTATCAATATAATCTTGTTcatgataatatt
ttgaaattttacagtgCTGAGAAAAGACTATCAGATTCCAATATGATTCA
ATATTGGATTGTTACGCAGTATCATGCTAACGGTTCATTAGCTGACTATT
TGTCAAGCAATACTCTAGATTGGACTTTAATGTTACAGTTAGCCATTTCA
ATGACTCAAGGGATTGCTTATCTTCACGAGGAAATTATGACAGAAACTAT
ACGAAAACCCATCATAGCTCATCGGGATATTAAAAGTCGTAATGTTTTAG
TGAGAGACAATTTAACATGTTGTATAAGTGATTTTGGATCAGCATGCCAA
TTCTCGGAAAACACTGATAAAGAAGAAATCAAGGGACAGgTTGGTACCAA
ACGGTATATGGCACCTGAAGTTCTAGAAGGCGCAGTTGCTTTTCAAACAG
AATCATATAAAAGCATTGACTGTTATTCACTTAGTCTCATATTGTGGGAG
CTTCTCTCTCGTTGCGATACAGGGCAAGTACCAGCAGAACCTGTATACCA
ATTACCTTTCGAAGCAGAAGTTGGAACAAATCCTACACTAGAAGAATTGA
GGGCTTGTGTTTCTGAGCAAGGAATGAGACCGAAATTGAAAGCTGGTTGG
ACTAGAGATCCTAAAGTAACTGAGCTCTGCAACACCATCGAAGAAGGCTG
GGACAAAGAAGGGGATGCACGCCTTAGTGCACCAGGTGTCCTCCAACGTT
TGAAGGAGTTACAACTGGCAGCTGAAGGGGGAGAAGTGAACCCTACACAG
GCGACCAGAATCAATATCCCACCTTATGGAGATGGTGATTCAACTCTTGG
TGGAAATTCTACTGGCGTCTCATTCCTATCAGGATCAACCTCGAGTTGCG
GGAAGGAGCCTTTGATTGTTGATCTTTCTTAGatgagTCAATGTTTAAGC
CTTAatgagaaaaaatctcaaaaatgtttCGAAGATTTGAACTGTTTTGA
AACATGTGGAAAAAATCAAGTATGCACAATATTTTATCGAAACATGACTG
GAGAACTTCAGCCTGGCTTTGCTGGCTGTTGGGAGAAAGAAGGCAAGGGG
TTTTGTAATCCAGACCATTTGACACATATTGACTGCCACCTTCGACACAA
GGGAAAGCATAATGGCATCGATTCTTTTATGTGTTGCTGTACTGGAAATA
GATGCAACAAAAATCTTATACAGAATGCTACATTGATGACACCCACTCCC
AGCACATCTACTGAAACAACCTTAATGACCGAGTTACCAAAACATCCAGA
AAGCAAAACATTACAATATTCAATTCCTCCTGTTATATGCAGCATTTTCG
TTGTCATTGCACTATTGTATTTTTGGAAACGCCATAAACAACGAATACCG
TCTGGTCATCCCCTGATACTTTATCAACCACCAACGCCTATTATCACCAA
ACCTGTTCAATGGGACCGAGTTGTAAATGTGGGACAGTTTGGTTGTGTTT
GGAAGGCTACTTACAACAATAATGAAGTAGCCGTTAAAATTATTCAAGCT
CACGAAAAATCTTATTGGATTACAGAAAAGACAATGTATCAATATAATCT
TGTTcatgataatattttgaaattttacagtgCTGAGAAAAGACTATCAG
ATTCCAATATGATTCAATATTGGATTGTTACGCAGTATCATGCTAACGGT
TCATTAGCTGACTATTTGTCAAGCAATACTCTAGATTGGACTTTAATGTT
ACAGTTAGCCATTTCAATGACTCAAGGGATTGCTTATCTTCACGAGGAAA
TTATGACAGAAACTATACGAAAACCCATCATAGCTCATCGGGATATTAAA
AGTCGTAATGTTTTAGTGAGAGACAATTTAACATGTTGTATAAGTGATTT
TGGATCAGCATGCCAATTCTCGGAAAACACTGATAAAGAAGAAATCAAGG
GACAGgTTGGTACCAAACGGTATATGGCACCTGAAGTTCTAGAAGGCGCA
GTTGCTTTTCAAACAGAATCATATAAAAGCATTGACTGTTATTCACTTAG
TCTCATATTGTGGGAGCTTCTCTCTCGTTGCGATACAGGGCAAGTACCAG
CAGAACCTGTATACCAATTACCTTTCGAAGCAGAAGTTGGAACAAATCCT
ACACTAGAAGAATTGAGGGCTTGTGTTTCTGAGCAAGGAATGAGACCGAA
ATTGAAAGCTGGTTGGACTAGAGATCCTAAAGTAACTGAGCTCTGCAACA
CCATCGAAGAAGGCTGGGACAAAGAAGGGGATGCACGCCTTAGTGCACCA
GGTGTCCTCCAACGTTTGAAGGAGTTACAACTGGCAGCTGAAGGGGGAGA
AGTGAACCCTACACAGGCGACCAGAATCAATATCCCACCTTATGGAGATG
GTGATTCAACTCTTGGTGGAAATTCTACTGGCGTCTCATTCCTATCAGGA
TCAACCTCGAGTTGCGGGAAGGAGCCTTTGATTGTTGATCTTTCTTAGat
gagTCAATGTTTAAGCCTTAatgagaaaaaatctcaaaaatgtttCGAAG
ATTTGAACTGTTTTGAAACATGTGGAAAAAATCAAGTATGCACAATATTT
TATCGAAACATGACTGGAGAACTTCAGCCTGGCTTTGCTGGCTGTTGGGA
GAAAGAAGGCAAGGGGTTTTGTAATCCAGACCATTTGACACATATTGACT
GCCACCTTCGACACAAGGGAAAGCATAATGGCATCGATTCTTTTATGTGT
TGCTGTACTGGAAATAGATGCAACAAAAATCTTATACAGAATGCTACATT
GATGACACCCACTCCCAGCACATCTACTGAAACAACCTTAATGACCGAGT
TACCAAAACATCCAGAAAGCAAAACATTACAATATTCAATTCCTCCTGTT
ATATGCAGCATTTTCGTTGTCATTGCACTATTGTATTTTTGGAAACGCCA
TAAACAACGAATACCGTCTGGTCATCCCCTGATACTTTATCAACCACCAA
CGCCTATTATCACCAAACCTGTTCAATGGGACCGAGTTGTAAATGTGGGA
CAGTTTGGTTGTGTTTGGAAGGCTACTTACAACAATAATGAAGTAGCCGT
TAAAATTATTCAAGCTCACGAAAAATCTTATTGGATTACAGAAAAGACAA
TGTATCAATATAATCTTGTTcatgataatattttgaaattttacagtgCT
GAGAAAAGACTATCAGATTCCAATATGATTCAATATTGGATTGTTACGCA
GTATCATGCTAACGGTTCATTAGCTGACTATTTGTCAAGCAATACTCTAG
ATTGGACTTTAATGTTACAGTTAGCCATTTCAATGACTCAAGGGATTGCT
TATCTTCACGAGGAAATTATGACAGAAACTATACGAAAACCCATCATAGC
TCATCGGGATATTAAAAGTCGTAATGTTTTAGTGAGAGACAATTTAACAT
GTTGTATAAGTGATTTTGGATCAGCATGCCAATTCTCGGAAAACACTGAT
AAAGAAGAAATCAAGGGACAGgTTGGTACCAAACGGTATATGGCACCTGA
AGTTCTAGAAGGCGCAGTTGCTTTTCAAACAGAATCATATAAAAGCATTG
ACTGTTATTCACTTAGTCTCATATTGTGGGAGCTTCTCTCTCGTTGCGAT
ACAGGGCAAGTACCAGCAGAACCTGTATACCAATTACCTTTCGAAGCAGA
AGTTGGAACAAATCCTACACTAGAAGAATTGAGGGCTTGTGTTTCTGAGC
AAGGAATGAGACCGAAATTGAAAGCTGGTTGGACTAGAGATCCTAAAGTA
ACTGAGCTCTGCAACACCATCGAAGAAGGCTGGGACAAAGAAGGGGATGC
ACGCCTTAGTGCACCAGGTGTCCTCCAACGTTTGAAGGAGTTACAACTGG
CAGCTGAAGGGGGAGAAGTGAACCCTACACAGGCGACCAGAATCAATATC
CCACCTTATGGAGATGGTGATTCAACTCTTGGTGGAAATTCTACTGGCGT
CTCATTCCTATCAGGATCAACCTCGAGTTGCGGGAAGGAGCCTTTGATTG
TTGATCTTTCTTAGatgagTCAATGTTTAAGCCTTAatgagaaaaaatct
caaaaatgtttCGAAGATTTGAACTGTTTTGAAACATGTGGAAAAAATCA
AGTATGCACAATATTTTATCGAAACATGACTGGAGAACTTCAGCCTGGCT
TTGCTGGCTGTTGGGAGAAAGAAGGCAAGGGGTTTTGTAATCCAGACCAT
TTGACACATATTGACTGCCACCTTCGACACAAGGGAAAGCATAATGGCAT
CGATTCTTTTATGTGTTGCTGTACTGGAAATAGATGCAACAAAAATCTTA
TACAGAATGCTACATTGATGACACCCACTCCCAGCACATCTACTGAAACA
ACCTTAATGACCGAGTTACCAAAACATCCAGAAAGCAAAACATTACAATA
TTCAATTCCTCCTGTTATATGCAGCATTTTCGTTGTCATTGCACTATTGT
ATTTTTGGAAACGCCATAAACAACGAATACCGTCTGGTCATCCCCTGATA
CTTTATCAACCACCAACGCCTATTATCACCAAACCTGTTCAATGGGACCG
AGTTGTAAATGTGGGACAGTTTGGTTGTGTTTGGAAGGCTACTTACAACA
ATAATGAAGTAGCCGTTAAAATTATTCAAGCTCACGAAAAATCTTATTGG
ATTACAGAAAAGACAATGTATCAATATAATCTTGTTcatgataatatttt
gaaattttacagtgCTGAGAAAAGACTATCAGATTCCAATATGATTCAAT
ATTGGATTGTTACGCAGTATCATGCTAACGGTTCATTAGCTGACTATTTG
TCAAGCAATACTCTAGATTGGACTTTAATGTTACAGTTAGCCATTTCAAT
GACTCAAGGGATTGCTTATCTTCACGAGGAAATTATGACAGAAACTATAC
GAAAACCCATCATAGCTCATCGGGATATTAAAAGTCGTAATGTTTTAGTG
AGAGACAATTTAACATGTTGTATAAGTGATTTTGGATCAGCATGCCAATT
CTCGGAAAACACTGATAAAGAAGAAATCAAGGGACAGgTTGGTACCAAAC
GGTATATGGCACCTGAAGTTCTAGAAGGCGCAGTTGCTTTTCAAACAGAA
TCATATAAAAGCATTGACTGTTATTCACTTAGTCTCATATTGTGGGAGCT
TCTCTCTCGTTGCGATACAGGGCAAGTACCAGCAGAACCTGTATACCAAT
TACCTTTCGAAGCAGAAGTTGGAACAAATCCTACACTAGAAGAATTGAGG
GCTTGTGTTTCTGAGCAAGGAATGAGACCGAAATTGAAAGCTGGTTGGAC
TAGAGATCCTAAAGTAACTGAGCTCTGCAACACCATCGAAGAAGGCTGGG
ACAAAGAAGGGGATGCACGCCTTAGTGCACCAGGTGTCCTCCAACGTTTG
AAGGAGTTACAACTGGCAGCTGAAGGGGGAGAAGTGAACCCTACACAGGC
GACCAGAATCAATATCCCACCTTATGGAGATGGTGATTCAACTCTTGGTG
GAAATTCTACTGGCGTCTCATTCCTATCAGGATCAACCTCGAGTTGCGGG
AAGGAGCCTTTGATTGTTGATCTTTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031950XLOC_031950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050449-exon-scaffold_172-1491911889:36299..36812TCONS_00050449-exon-scaffold_172-1491911889:36299..36812Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1510915933:36299..36812TCONS_00050449-exon-scaffold_172-1510915933:36299..36812Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1575043694:36299..36812TCONS_00050449-exon-scaffold_172-1575043694:36299..36812Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1491911889:37188..37873TCONS_00050449-exon-scaffold_172-1491911889:37188..37873Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1510915933:37188..37873TCONS_00050449-exon-scaffold_172-1510915933:37188..37873Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1575043694:37188..37873TCONS_00050449-exon-scaffold_172-1575043694:37188..37873Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1491911889:38142..38280TCONS_00050449-exon-scaffold_172-1491911889:38142..38280Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1510915933:38142..38280TCONS_00050449-exon-scaffold_172-1510915933:38142..38280Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1575043694:38142..38280TCONS_00050449-exon-scaffold_172-1575043694:38142..38280Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1491911889:38559..38692TCONS_00050449-exon-scaffold_172-1491911889:38559..38692Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1510915933:38559..38692TCONS_00050449-exon-scaffold_172-1510915933:38559..38692Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1575043694:38559..38692TCONS_00050449-exon-scaffold_172-1575043694:38559..38692Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1491911889:39239..40253TCONS_00050449-exon-scaffold_172-1491911889:39239..40253Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1510915933:39239..40253TCONS_00050449-exon-scaffold_172-1510915933:39239..40253Clytia hemisphaericaexon
TCONS_00050449-exon-scaffold_172-1575043694:39239..40253TCONS_00050449-exon-scaffold_172-1575043694:39239..40253Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050449-proteinTCONS_00050449-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:36299..40253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.3096	12.1544	28.9053	33.7648	21.812	18.0159	15.571	17.6447	12.6715	10.7015	11.7011	10.6553	11.4802	11.4271	8.51901	8.75366	10.1671	10.3812	7.71665	7.29604	11.6236	10.8265	11.8563	12.2576	12.5354	21.7329	8.33105	8.11454	9.10651	9.17327
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000333TGFB_receptor
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004702signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0007178transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0006468protein phosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
cellular_component GO:0016020 membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004702 signal transducer, downstream of receptor, with serine/threonine kinase activity
Blast
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BLAST of TCONS_00050449 vs. Swiss-Prot (Human)
Match: AVR2A (Activin receptor type-2A OS=Homo sapiens GN=ACVR2A PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 6.803e-88
Identity = 176/488 (36.07%), Postives = 265/488 (54.30%), Query Frame = 1 
Query:  169 KSKMSQCLSLN-----EKKSQKCFEDLNCFETCGKNQVCTIFYRNMTGELQPGFAGCWEKEGKGFCNPDHLTHIDCHLRHK--GKHNGIDSFMCCCTGNRCNKNLIQNAXXXXXXXXXXXXXXXXXXLPKHPESKTLQYSIPPVICSIFVVIALLYFWKRHKQRIPSGHPLILYQPPT----------PIITKPVQWDRVVNVGQFGCVWKATYNNNEVAVKIIQAHEKSYWITEKTMYQY-NLVHDNILKFYSAEKRLSDSNMIQYWIVTQYHANGSLADYLSSNTLDWTLMLQLAISMTQGIAYLHEEI-MTETIRKPIIAHRDIKSRNVLVRDNLTCCISDFGSACQFSENTDKEEIKGQVGTKRYMAPEVLEGAVAFQTESYKSIDCYSLSLILWELLSRCDTGQVPAEPVYQLPFEAEVGTNPTLEELRACVSEQGMRPKLKAGWTRDPKVTELCNTIEEGWDKEGDARLSAPGVLQRLKELQ 1575
            +S+  +CL  N     ++ +Q   E   C+    K + C   ++N++G ++    GCW            L  I+C+ R     K +  + + CCC GN CN+                T+ T     PK P    L YS+ P++    +VI   + ++ HK   P   P+++   PT           +  KP+Q   V   G+FGCVWKA   N  VAVKI    +K  W  E  +Y    + H+NIL+F  AEKR +  + +  W++T +H  GSL+D+L +N + W  +  +A +M +G+AYLHE+I   +   KP I+HRDIKS+NVL+++NLT CI+DFG A +F       +  GQVGT+RYMAPEVLEGA+ FQ +++  ID Y++ L+LWEL SRC     P +  Y LPFE E+G +P+LE+++  V  +  RP L+  W +   +  LC TIEE WD + +ARLSA  V +R+ ++Q
Sbjct:   24 RSETQECLFFNANWEKDRTNQTGVEP--CYGDKDKRRHCFATWKNISGSIEIVKQGCW------------LDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKF------SYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYP---PVLV---PTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVD-VDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDE-YMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 483
The following BLAST results are available for this feature:
BLAST of TCONS_00050449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AVR2A6.803e-8836.07Activin receptor type-2A OS=Homo sapiens GN=ACVR2A... [more]
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