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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050740 ID=TCONS_00050740|Name=TCONS_00050740|organism=Clytia hemisphaerica|type=transcript|length=1925bp
ttgaagccttcggatgttcttaaccttttcagttttaagcctaaaaatgt
tcttaacatgtacttatttattttgaccattttgtgggtatttttgatca
ttttcctGAAATGTGGTGTTTTTGactccacaaagccttaaaatgttctt
aacttgttcttaacattttggctatcgaagccttatgttctttgaTAGTT
CgctcttacaaaaaaaagtgtaatttcaTTGATGCAATCACTAGTTacat
atttcgaaaaaatcttcttaGATTGTAATAAAGTCTTTGAAAATACTTTC
TCAGCTTATTCTGAAAGTTATGAAATACACAATATAGAAATGTTTCTGTT
ACCGTCTattagaccttatcggagtttttgatttttctaaaaaagcgatg
cattgtaggattgtttcgagtatattacaatagaattgcCTCCAGGAATT
CCTAAAGAGagttctattgtaatacactcgaaacaatcccacaatgcatc
gcttttttagaaaagtcaaaaactccgataaggtctattatatTGAGACA
CttaatcaaaaaatttagttGAGTCGAATTAAAGAGATATTCGATCCCCT
GGAAAAGAACAGAAATCAGTTGGACTAATGCTAcactatttttataagaa
ccagtaaattttttctgaggctcggctgttcttatcttgttcttcTTATA
aggtgtaattgaggtattttaggctttatacaaaattttaatACTTTAAC
CCCTAAATCGCTTAAAATTTAGCaattcaggctcagcattgttcttaaat
tgttctcatttttcagcgattttgagccttattgttcttataaaattgtt
ctcgtATAAGAAAAGTATACTTTATTGTATCATTTACTTACAACCCAGCA
CAACTTTTAATCATGTTTACAACGTCTCGCTTAAAAGTTTCATCGCTGAT
ACCTGAGTACCCAGGAAAATGATTCAAATCTACCAAAGCGTAATTCCCTT
CTAAATCCTTCAAAATATCGAAACCATACATACGAAATCGTGTTACTTTG
GAAAGTCGTTCCACGATAGCCTGGATAACAGTCTTATTTAACATGTTCGG
GTTTTCTTCGCCCGataaccacgcgcgggcgttcggATCAGTACCATGAA
GTTCTGGAATAAACGCGCGTCCTGTTTTTGAAACGTTTCGTGTATCGAAA
ACTAGGCTGGGCTGGTTAGGATCACAGTCTATATTCTGTATGGAGGGTCT
TTCGCACATACTAACACGATCCCCAATCACAAACACTTTGTATATAACGC
CACCATGGTTACAAAACTCCTGCAAAAGACACGGCACCGGTAGATCAAAT
AATTTCTCATCACTAAAAATGATCTTCATATCATGTGCACCATCTAGACA
AGAAGCCAAAGGTTTGGCCAAGATAGGAAACTTGATTCCAGATCTTTCGA
TAAGTTCGCGACAAACATCTAAGGCTGTGTTTTCAGGTATCTCAACAGTT
TTTGGTACGTAAACAGAAACACCATCGACAGTCATTGAGCATTGATTCAG
TATCTCGACTTGATATTGTCTTTTCATTAACTTAATAACAACTTCAAAAT
CATCCACAACCACCATTTCAGGATGTCGTTTCGAATATTCAACAGTCTTT
TGTATTAGATTTTCTGTTTCTTCCAAACTTAAACCGTCTTTATGTATATC
CACAACTTTATGGAAAAACACATCAAAAGGTCCTTGGCTTTCTAAATCGC
CGTGTATATCCACTTCAGTAATCTTGATATTTTCTATCAAACATAAATCT
GCTATACGTTCAGGTAgcttaattttcttcttcttttctttggGTATAAG
CAAACCAAGGTGAATTGGTTTCTTGTCTGTGTCTTCCATATTTGAATGAG
CAAtgctaaaaaaaggaaaaaaata Run BLAST on NCBI transcript from alignment at scaffold_185:226228..231105+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050740 ID=TCONS_00050740|Name=TCONS_00050740|organism=Clytia hemisphaerica|type=transcript|length=4878bp|location=Sequence derived from alignment at scaffold_185:226228..231105+ (Clytia hemisphaerica)
ttgaagccttcggatgttcttaaccttttcagttttaagcctaaaaatgt
tcttaacatgtacttatttattttgaccattttgtgggtatttttgatca
ttttcctGAAATGTGGTGTTTTTGactccacaaagccttaaaatgttctt
aacttgttcttaacattttggctatcgaagccttatgttctttgaTAGTT
CgctcttacaaaaaaaagtgtaatttcaTTGATGCAATCACTAGTTacat
atttcgaaaaaatcttcttaGATTGTAATAAAGTCTTTGAAAATACTTTC
TCAGCTTATTCTGAAAGTTATGAAATACACAATATAGAAATGTTTCTGTT
ACCGTCTattagaccttatcggagtttttgatttttctaaaaaagcgatg
cattgtaggattgtttcgagtatattacaatagaattgcCTCCAGGAATT
CCTAAAGAGagttctattgtaatacactcgaaacaatcccacaatgcatc
gcttttttagaaaagtcaaaaactccgataaggtctattatatTGAGACA
CttaatcaaaaaatttagttGAGTCGAATTAAAGAGATATTCGATCCCCT
GGAAAAGAACAGAAATCAGTTGGACTAATGCTAcactatttttataagaa
ccagtaaattttttctgaggctcggctgttcttatcttgttcttcTTATA
aggtgtaattgaggtattttaggctttatacaaaattttaatACTTTAAC
CCCTAAATCGCTTAAAATTTAGCaattcaggctcagcattgttcttaaat
tgttctcatttttcagcgattttgagccttattgttcttataaaattgtt
ctcgtATAAGAAAAGTATACTTTATTGTATCATTTACTTACAACCCAGCA
CAACTTTTAATCATGTTTACAACGTCTCGCTTAAAAGTTTCATCGCTGAT
ACCTGAGTACCCAGGAAAATGATTCAAATCTACCAAAGCGTAATTCCCTT
CTAAATCCTTCAAAATATCGAAACCATACATACGAAATCGTGTTACTTTG
GAAAGTCGTTCCACGATAGCCTGGATAACAGTCTTATTTAACATGTTCGG
GTTTTCTTCGCCCGataaccacgcgcgggcgttcggATCAGTACCATGAA
GTTCTGGAATAAACGCGCGTCCTGTTTTTGAAACGTTTCGTGTATCGAAA
ACTAGGCTGGGCTGGTTAGGATCACAGTCTATATTCTGTATGGAGGGTCT
TTCGCACATACTAACACGATCCCCAATCACAAACACTTTGTATATAACGC
CACCATGGTTACAAAACTCCTGCAAAAGACACGGCACCGGTAGATCAAAT
AATTTCTCATCACTAAAAATGATCTTCATATCATGTGCACCATCTAGACA
AGAAGCCAAAGGTTTGGCCAAGATAGGAAACTTGATTCCAGATCTCTCGA
TAAGTTCGCGACAAACATCTAAGGCTGTGTTTCCAGGTATCTCAACAGTT
GTTGGTACGTAAACAGAAACACCATCGACAGTCATTGAGCATTGATTCAG
TATCTCGACTTGATATTGTCTTTTCATTAACTTAATAACAACTTCAAAAT
CATCCACAACCACCATTTCAGGATGTCGTTTCGAATATTCAACAGTCTTT
TGTATTAGATTTTCTGTTTCTTCCAAACTTAAACCGTCTTTATGTATATC
CACAACTTTATGGAAAAACACATCAAAAGGTCCTTGGCTTTCTAAATCGC
CGTGTATATCCACTTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATTTTTACACATTAAGTAA
CCCTAGTAACTCCAACTATTCAAGGTCTgaacataaaaaatatattcctT
TGCAGTCATGAAATAAGATAACAAGACCAACCAGGTCTATACTACACTAG
TTCATCCCCCCCTTTATTTTCAAGTTTCTTAATTACTTCTTCTCAGAATG
TCCTTGTAAATTGTCTTTTCATAATTAGAATGCTCGATACTACTGCAGAG
CAAATTACTTcattaaaataagaacatcgcaaaactttgaagccttcgga
tgttcttaaccttttcagttttaagcctaaaaatgttcttaacatgtact
tatttattttgaccattttgtgggtatttttgatcattttcctGAAATGT
GGTGTTTTTGactccacaaagccttaaaatgttcttaacttgttcttaac
attttggctatcgaagccttatgttctttgaTAGTTCgctcttacaaaaa
aaagtgtaatttcaTTGATGCAATCACTAGTTacatatttcgaaaaaatc
ttcttaGATTGTAATAAAGTCTTTGAAAATACTTTCTCAGCTTATTCTGA
AAGTTATGAAATACACAATATAGAAATGTTTCTGTTACCGTCTattagac
cttatcggagtttttgatttttctaaaaaagcgatgcattgtaggattgt
ttcgagtatattacaatagaattgcCTCCAGGAATTCCTAAAGAGagttc
tattgtaatacactcgaaacaatcccacaatgcatcgcttttttagaaaa
gtcaaaaactccgataaggtctattatatTGAGACACTTAATCAAAGAAT
TTAGTTGAGTCGAATTAAAGAGATATTCGATTCCCTGGAAAAGAACAGAA
ATCAGTTGGACTAATGCTAAAGAGAATAAAAGTATACACTTTTTCTatga
accagtaaaatttttctgatgctcggctgttcttatctttttcttcttat
agggtgtaattgaggtattttaggctttatacaaaattgttcttaaattg
ttctcattttttagcgattttgagccttattgttcttataaaattgttct
cgtATAAGAAAAGTATACTTTATTGTATCATTTACTTACAACCCAGCACA
ACTTTTAATCATGTTTACAACGTCTCGCTTAAAAGTTTCATCGCTGATAC
CTGAGTACCCAGGAAAATGATTCAAATCTACCAAAGCGTAATTCCCTTCT
AAATCCTTCAAAATATCGAAACCATACATACGAAATCGTGTTACTTTGGA
AAGTCGTTCCACGATAGCCTGGATAACAGTCTTNGCGAAATCGTGTTACA
TTGAAAAGTCGTTCCACGATAGCCTGGATAACAGTCTTATTTAACATGTT
CGGGTTTTCTTCGCCCGATAACCACGCACGGGCGTTCGGATCAGTACCAT
GAAGTTCTGGAATAAACGCACGCCCCGTTTTTGAAACGTTTCGTGTATCG
AAAACTAGGCTGGGCTGGTTAGGATCACAATCTATATTCTGTATGGAGGG
TCTTTCGCACATACTGACACGATCCCCAATCACAAACACTTTGTATATAA
CACCACCATGGTTACAAAACTCCTGCAAAAGACACGGCACCGGTAAATCA
GATAGTTTCTCATGACTGAAAACGATCTTCATATCATGCGCACCATCGAG
ACAAGAAGCCAAAGGTTTGGCCAAGATAGGAAACTTGATTCCAGATCTTT
CGATAAGTTCGCGACAAACATCTAAGGCTGTGTTTTCAGGTATCTCAACA
GTTTTTGGTACGTAAACAGAAACACCATCGACAGTCATTGAGCATTGATT
CAGTATCTCGACTTGATATTGTCTTTTCATTAACTTAATAACAACTTCAA
AATCATCCACAACCACCATTTCAGGATGTCGTTTCGAATATTCAACAGTC
TTTTGTATTAGATTTTCTGTTTCTTCCAAACTTAAACCGTCTTTATGTAT
ATCCACAACTTTATGGAAAAACACATCAAAAGGTCCTTGGCTTTCTAAAT
CGCCGTGTATATCCACTTCAGTAATCTTGATATTTTCTATCAAACATAAA
TCTGCTATACGTTCAGGTAgcttaattttcttcttcttttctttggGTAT
AAGCAAACCAAGGTGAATTGGTTTCTTGTCTGTGTCTTCCATATTTGAAT
GAGCAAtgctaaaaaaaggaaaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050740-exon-scaffold_185-1491911889:226228..227638 | TCONS_00050740-exon-scaffold_185-1491911889:226228..227638 | Clytia hemisphaerica | exon |
| TCONS_00050740-exon-scaffold_185-1510915933:226228..227638 | TCONS_00050740-exon-scaffold_185-1510915933:226228..227638 | Clytia hemisphaerica | exon |
| TCONS_00050740-exon-scaffold_185-1575043694:226228..227638 | TCONS_00050740-exon-scaffold_185-1575043694:226228..227638 | Clytia hemisphaerica | exon |
| TCONS_00050740-exon-scaffold_185-1491911889:230592..231105 | TCONS_00050740-exon-scaffold_185-1491911889:230592..231105 | Clytia hemisphaerica | exon |
| TCONS_00050740-exon-scaffold_185-1510915933:230592..231105 | TCONS_00050740-exon-scaffold_185-1510915933:230592..231105 | Clytia hemisphaerica | exon |
| TCONS_00050740-exon-scaffold_185-1575043694:230592..231105 | TCONS_00050740-exon-scaffold_185-1575043694:230592..231105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:226228..231105 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008656 | Inositol_tetrakis-P_1-kinase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0005524 | ATP binding |
| GO:0000287 | magnesium ion binding |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032957 | inositol trisphosphate metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032957 |
inositol trisphosphate metabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0052726 |
inositol-1,3,4-trisphosphate 5-kinase activity |
| molecular_function |
GO:0052725 |
inositol-1,3,4-trisphosphate 6-kinase activity |
| molecular_function |
GO:0047325 |
inositol tetrakisphosphate 1-kinase activity |
| molecular_function |
GO:0000287 |
magnesium ion binding |
Blast
BLAST of TCONS_00050740 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 3.081e-37 Identity = 90/307 (29.32%), Postives = 158/307 (51.47%), Query Frame = -1
Query: 903 ADLCLIENIKITEVDIHGDLESQGPFDVFFHKVVDI-----HKDGLSLEETENLIQKTVEYSKRHPEMVVVDDFEVVIKLMKRQYQVEILNQCSMTVDGVSVYVPKTVEIPENTALDVCRELIERSGIKFPILAKPLASCLDGAHDMKIIFSDEKLFDLPVPCLLQEFCNHGGVIYKVFVIGDRVSMCERPSIQNIDCD-PNQPSLVFDTRNVSKTGRAFIPELHGTDPNARAWLSGEENPNMLNKTVIQAIVERLSKVTRFRMYGFD-ILKDLEGNYALVDLNHFPGYSGISDETFKRDVVNMIKS 1802
A+LC +++ ++++ +E QGP DV HK+ D+ D SLE L+ + EY HPE +V+D + L+ R E++ + ++ + P +E+ D R L+E++G+ FP + K + +H+M I+F+ E L + PC++Q F NH V+YKVFV+G+ ++ +RPS++N ++ S+ F++ NVSK PE E P + VI+ + L + ++G D I+ + G +A++D+N FPGY G+S+ F D++N I +
Sbjct: 28 AELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLE----LVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMR-LLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE--FFTDLLNHIAT 318
The following BLAST results are available for this feature:
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