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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050840 ID=TCONS_00050840|Name=TCONS_00050840|organism=Clytia hemisphaerica|type=transcript|length=935bp
CGGAACATTTCAAGTTGTTTTTCTTACATTTGCACCAATTATCAGCACAT
TTAACTGTCTTGCAACTACATACAGTCAAATGAATGATTGATTGTGGTGC
AGGTAACAATGCAGTCGTTACTGGCTCATAACATTCATCGACATCCTTTT
TCCAACCAAAATCAAGCGGATCGGGTAATATTTGAAACGAAATATGTGAT
TGTTTCCAAACAGTATTCATATAATGTCCACGAAGACACTTTTGACGAAA
TGCCTCTAAAGTTGGTGGCAACTTGTGTGACTCTGCTTGTTTCTTTGAGA
ACATCCGCCAGCGAAGATCAGCGAGGCTTTGAATTCCTTGCGGTACTTTA
TTCCTGCAGTAGAGCTGCACAACATACTTCTCAAGGGATTTCACAACATC
AGATGTTAGttgagagctacttccaagttGTGAAAATCCCTGAAGCACAT
CGTCGTCGACTAACAAGAATGTTTCCCAGCAAGAAAGCTTCGTGTAACCT
AAAAATCTGCCAGTTTGATCACAACCTGTAATCGCGTGGAAACCCAACAA
AGCCTTGCAAACATTCAAAGGTAGCTGACTGTGAATTTTTCTGAGTTCAA
ATTCACGGTTGACTGTTTTGAATATAGTCGAGCTACATAAGCTTTCAAAA
TAATGCAGAAGAATGAGCAGCACATCTGTATCGGAACAAAGGATTACCAA
CTCCGAAAACGGGTCTCTCTTCGCGACGTCGAGTGCATGAAGCACTATCC
CTGTGTCTGCTTCTTCGTGATTGTAGTTGAATAGATCCTCATCAAGATCA
GACAAATTTGACGTAACATTTCCATTTAAAACAAGGACGAAATCCTTTAA
AAGATGCTGGCTCAGTTTACCACTGAGATATTTGGTCAACTCTTGTTTGG
TCTGGATAGAGGACAAAAACTCTTTCGTGTCAAGG Run BLAST on NCBI protein sequence of TCONS_00050840-protein >TCONS_00050840-protein ID=TCONS_00050840-protein|Name=TCONS_00050840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
LDTKEFLSSIQTKQELTKYLSGKLSQHLLKDFVLVLNGNVTSNLSDLDED
LFNYNHEEADTGIVLHALDVAKRDPFSELVILCSDTDVLLILLHYFESLC
SSTIFKTVNREFELRKIHSQLPLNVCKALLGFHAITGCDQTGRFLGYTKL
SCWETFLLVDDDVLQGFSQLGSSSQLTSDVVKSLEKYVVQLYCRNKVPQG
IQSLADLRWRMFSKKQAESHKLPPTLEAFRQKCLRGHYMNTVWKQSHISF
QILPDPLDFGWKKDVDECYEPVTTALLPAPQSIIHLTVCSCKTVKCADNW
CKCKKNNLKCS Run BLAST on NCBI transcript from alignment at scaffold_189:78259..79193 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050840 ID=TCONS_00050840|Name=TCONS_00050840|organism=Clytia hemisphaerica|type=transcript|length=935bp|location=Sequence derived from alignment at scaffold_189:78259..79193 (Clytia hemisphaerica)
CCTTGACACGAAAGAGTTTTTGTCCTCTATCCAGACCAAACAAGAGTTGA
CCAAATATCTCAGTGGTAAACTGAGCCAGCATCTTTTAAAGGATTTCGTC
CTTGTTTTAAATGGAAATGTTACGTCAAATTTGTCTGATCTTGATGAGGA
TCTATTCAACTACAATCACGAAGAAGCAGACACAGGGATAGTGCTTCATG
CACTCGACGTCGCGAAGAGAGACCCGTTTTCGGAGTTGGTAATCCTTTGT
TCCGATACAGATGTGCTGCTCATTCTTCTGCATTATTTTGAAAGCTTATG
TAGCTCGACTATATTCAAAACAGTCAACCGTGAATTTGAACTCAGAAAAA
TTCACAGTCAGCTACCTTTGAATGTTTGCAAGGCTTTGTTGGGTTTCCAC
GCGATTACAGGTTGTGATCAAACTGGCAGATTTTTAGGTTACACGAAGCT
TTCTTGCTGGGAAACATTCTTGTTAGTCGACGACGATGTGCTTCAGGGAT
TTTCACaacttggaagtagctctcaaCTAACATCTGATGTTGTGAAATCC
CTTGAGAAGTATGTTGTGCAGCTCTACTGCAGGAATAAAGTACCGCAAGG
AATTCAAAGCCTCGCTGATCTTCGCTGGCGGATGTTCTCAAAGAAACAAG
CAGAGTCACACAAGTTGCCACCAACTTTAGAGGCATTTCGTCAAAAGTGT
CTTCGTGGACATTATATGAATACTGTTTGGAAACAATCACATATTTCGTT
TCAAATATTACCCGATCCGCTTGATTTTGGTTGGAAAAAGGATGTCGATG
AATGTTATGAGCCAGTAACGACTGCATTGTTACCTGCACCACAATCAATC
ATTCATTTGACTGTATGTAGTTGCAAGACAGTTAAATGTGCTGATAATTG
GTGCAAATGTAAGAAAAACAACTTGAAATGTTCCG Coding sequence (CDS) from alignment at scaffold_189:78259..79193 >TCONS_00050840 ID=TCONS_00050840|Name=TCONS_00050840|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_189:78259..79193 (Clytia hemisphaerica)
CTTGACACGAAAGAGTTTTTGTCCTCTATCCAGACCAAACAAGAGTTGAC
CAAATATCTCAGTGGTAAACTGAGCCAGCATCTTTTAAAGGATTTCGTCC
TTGTTTTAAATGGAAATGTTACGTCAAATTTGTCTGATCTTGATGAGGAT
CTATTCAACTACAATCACGAAGAAGCAGACACAGGGATAGTGCTTCATGC
ACTCGACGTCGCGAAGAGAGACCCGTTTTCGGAGTTGGTAATCCTTTGTT
CCGATACAGATGTGCTGCTCATTCTTCTGCATTATTTTGAAAGCTTATGT
AGCTCGACTATATTCAAAACAGTCAACCGTGAATTTGAACTCAGAAAAAT
TCACAGTCAGCTACCTTTGAATGTTTGCAAGGCTTTGTTGGGTTTCCACG
CGATTACAGGTTGTGATCAAACTGGCAGATTTTTAGGTTACACGAAGCTT
TCTTGCTGGGAAACATTCTTGTTAGTCGACGACGATGTGCTTCAGGGATT
TTCACaacttggaagtagctctcaaCTAACATCTGATGTTGTGAAATCCC
TTGAGAAGTATGTTGTGCAGCTCTACTGCAGGAATAAAGTACCGCAAGGA
ATTCAAAGCCTCGCTGATCTTCGCTGGCGGATGTTCTCAAAGAAACAAGC
AGAGTCACACAAGTTGCCACCAACTTTAGAGGCATTTCGTCAAAAGTGTC
TTCGTGGACATTATATGAATACTGTTTGGAAACAATCACATATTTCGTTT
CAAATATTACCCGATCCGCTTGATTTTGGTTGGAAAAAGGATGTCGATGA
ATGTTATGAGCCAGTAACGACTGCATTGTTACCTGCACCACAATCAATCA
TTCATTTGACTGTATGTAGTTGCAAGACAGTTAAATGTGCTGATAATTGG
TGCAAATGTAAGAAAAACAACTTGAAATGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050840-exon-scaffold_189-1491911889:78259..79193 | TCONS_00050840-exon-scaffold_189-1491911889:78259..79193 | Clytia hemisphaerica | exon |
| TCONS_00050840-exon-scaffold_189-1510915933:78259..79193 | TCONS_00050840-exon-scaffold_189-1510915933:78259..79193 | Clytia hemisphaerica | exon |
| TCONS_00050840-exon-scaffold_189-1575043694:78259..79193 | TCONS_00050840-exon-scaffold_189-1575043694:78259..79193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:78259..79193 . |
Blast
The following BLAST results are available for this feature:
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