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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052033 ID=TCONS_00052033|Name=TCONS_00052033|organism=Clytia hemisphaerica|type=transcript|length=1510bp
GGGGTCGATGTGGTAACCAGTGAAAGCGTATCTGTCTTTGACATCTGGTA
TTTGTTTGACAAAGTGGGCATCAAATTCTTTCTTGGCTTCAAATGAGTCT
GCTTCATTAAGTTTGATTTCTTCAGATGAAAGCATTGGAAAAGATGATTG
AGGTAGTGTCATCCAAGGAAATCCGTTGATCCATGTTGAGTTTTGATTAA
CATCATTGATGGTGGCACCTTTCCTTGTACCGATGTTCGCTGCCATGTCT
TCAGATTGAACATAGTACCATTCTTCCTTGGTTGTGAATCTAAGTGTTTC
AATAACTCTATTTCTGGTCCAGAGCTTCAATGGTTTTTCGTTGTTTGATA
ACCAGTGAAGGCAGATTTGACTGTCAGTAAATTTGATGGAACTCTTGTGG
TAGTTCTTGAATGATCTTCTGACTATTTCCCCAGTGTAAGCAGTTGTCAG
AGCTGCATACAGTTCGGCTCTCGGCAGGCTCATATCTTTGGGAACAACAC
GTGTGCGAGCAAAGACAAGTTGACATGAGAATGAGCCGTCTCGTCTTTTG
AATCTTGCGTAGACACAGGAACAGATCATTGATTTGCTGGCGTCCCCAAA
GTTGAGTGTGTTGATGTCAAGGTTCAATGCGTCCTCAGGAACTATTGCAC
GTTTGAACTTGATGGTGCCAATGCTTTTGATGAGTTCAAAGTTGGACTCC
CATATTGGTCTAAGATCTTCAGGAATTGGATCATCCCAATCGAGCTTGCG
TAGAACCAGTTGTTGAACGTCTAGTTTCAGAGATGCGATGATTGGGGCGA
CTTTGCCAGTCAGGTCGAACACTTCAGAGACCTTTGAAGAACAATGACGT
CTGGTGAGCTGCTTTGGAATGATGTTGATTGTGTTTGACGGTTTCTTCCC
ACGTTGCTTCTTGGCGAAGTTGAGATCACCAATGTTGATTGATAATTTAT
CTTCTTTCACATGCCACCGCATTCCACCAACAAAAATGGTATTTCCATCG
TCAGTGAGGTTATCTGGTGGATCTTCCCCTGAGAATGTAACACCTTTTAG
TCGGAAGCCTCCTCTGTTTAGGACTAGCTCCAACTCATCTGCTCGTTGGT
GGGCAGCTTGTTGGTTGTCTTCCCCAGAAATGCAATCATCCACATAAATG
TCGTCCTGGATAGTTTGATTGACATCAGGGTATTCTTCCTTTGACAATTG
ACCAACTTTTCGTAAACCGTAGACAGCTTGGTTACAGCTTGATCTGACAC
CATATATTAGGGTTTTTATGACCTTTTCTTCTGGTATGGATTCAGGATTG
AGATCTTTGTTCCAAATATAGCGTTGGTATGACCATTGGGATTGATCTAG
TTGAATGGTGTTGTACATTTTGCTTATGTCTGTGTGTAGTGCGATGCGAT
GCAATGACCAACGAATGAGGATCTCCTGTAGCTTGTTGAGTTCGTTTCTT
CCTTTGGCAAGCAAGTCATTGAGGCTGTGTCCAGATGGTGTTGCTTGTGA
AGCATCAAAG Run BLAST on NCBI protein sequence of TCONS_00052033-protein >TCONS_00052033-protein ID=TCONS_00052033-protein|Name=TCONS_00052033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp
FDASQATPSGHSLNDLLAKGRNELNKLQEILIRWSLHRIALHTDISKMYN
TIQLDQSQWSYQRYIWNKDLNPESIPEEKVIKTLIYGVRSSCNQAVYGLR
KVGQLSKEEYPDVNQTIQDDIYVDDCISGEDNQQAAHQRADELELVLNRG
GFRLKGVTFSGEDPPDNLTDDGNTIFVGGMRWHVKEDKLSINIGDLNFAK
KQRGKKPSNTINIIPKQLTRRHCSSKVSEVFDLTGKVAPIIASLKLDVQQ
LVLRKLDWDDPIPEDLRPIWESNFELIKSIGTIKFKRAIVPEDALNLDIN
TLNFGDASKSMICSCVYARFKRRDGSFSCQLVFARTRVVPKDMSLPRAEL
YAALTTAYTGEIVRRSFKNYHKSSIKFTDSQICLHWLSNNEKPLKLWTRN
RVIETLRFTTKEEWYYVQSEDMAANIGTRKGATINDVNQNSTWINGFPWM
TLPQSSFPMLSSEEIKLNEADSFEAKKEFDAHFVKQIPDVKDRYAFTGYH
IDP Run BLAST on NCBI transcript from alignment at scaffold_208:355375..356884 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052033 ID=TCONS_00052033|Name=TCONS_00052033|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at scaffold_208:355375..356884 (Clytia hemisphaerica)
CTTTGATGCTTCACAAGCAACACCATCTGGACACAGCCTCAATGACTTGC
TTGCCAAAGGAAGAAACGAACTCAACAAGCTACAGGAGATCCTCATTCGT
TGGTCATTGCATCGCATCGCACTACACACAGACATAAGCAAAATGTACAA
CACCATTCAACTAGATCAATCCCAATGGTCATACCAACGCTATATTTGGA
ACAAAGATCTCAATCCTGAATCCATACCAGAAGAAAAGGTCATAAAAACC
CTAATATATGGTGTCAGATCAAGCTGTAACCAAGCTGTCTACGGTTTACG
AAAAGTTGGTCAATTGTCAAAGGAAGAATACCCTGATGTCAATCAAACTA
TCCAGGACGACATTTATGTGGATGATTGCATTTCTGGGGAAGACAACCAA
CAAGCTGCCCACCAACGAGCAGATGAGTTGGAGCTAGTCCTAAACAGAGG
AGGCTTCCGACTAAAAGGTGTTACATTCTCAGGGGAAGATCCACCAGATA
ACCTCACTGACGATGGAAATACCATTTTTGTTGGTGGAATGCGGTGGCAT
GTGAAAGAAGATAAATTATCAATCAACATTGGTGATCTCAACTTCGCCAA
GAAGCAACGTGGGAAGAAACCGTCAAACACAATCAACATCATTCCAAAGC
AGCTCACCAGACGTCATTGTTCTTCAAAGGTCTCTGAAGTGTTCGACCTG
ACTGGCAAAGTCGCCCCAATCATCGCATCTCTGAAACTAGACGTTCAACA
ACTGGTTCTACGCAAGCTCGATTGGGATGATCCAATTCCTGAAGATCTTA
GACCAATATGGGAGTCCAACTTTGAACTCATCAAAAGCATTGGCACCATC
AAGTTCAAACGTGCAATAGTTCCTGAGGACGCATTGAACCTTGACATCAA
CACACTCAACTTTGGGGACGCCAGCAAATCAATGATCTGTTCCTGTGTCT
ACGCAAGATTCAAAAGACGAGACGGCTCATTCTCATGTCAACTTGTCTTT
GCTCGCACACGTGTTGTTCCCAAAGATATGAGCCTGCCGAGAGCCGAACT
GTATGCAGCTCTGACAACTGCTTACACTGGGGAAATAGTCAGAAGATCAT
TCAAGAACTACCACAAGAGTTCCATCAAATTTACTGACAGTCAAATCTGC
CTTCACTGGTTATCAAACAACGAAAAACCATTGAAGCTCTGGACCAGAAA
TAGAGTTATTGAAACACTTAGATTCACAACCAAGGAAGAATGGTACTATG
TTCAATCTGAAGACATGGCAGCGAACATCGGTACAAGGAAAGGTGCCACC
ATCAATGATGTTAATCAAAACTCAACATGGATCAACGGATTTCCTTGGAT
GACACTACCTCAATCATCTTTTCCAATGCTTTCATCTGAAGAAATCAAAC
TTAATGAAGCAGACTCATTTGAAGCCAAGAAAGAATTTGATGCCCACTTT
GTCAAACAAATACCAGATGTCAAAGACAGATACGCTTTCACTGGTTACCA
CATCGACCCC Coding sequence (CDS) from alignment at scaffold_208:355375..356884 >TCONS_00052033 ID=TCONS_00052033|Name=TCONS_00052033|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_208:355375..356884 (Clytia hemisphaerica)
TTTGATGCTTCACAAGCAACACCATCTGGACACAGCCTCAATGACTTGCT
TGCCAAAGGAAGAAACGAACTCAACAAGCTACAGGAGATCCTCATTCGTT
GGTCATTGCATCGCATCGCACTACACACAGACATAAGCAAAATGTACAAC
ACCATTCAACTAGATCAATCCCAATGGTCATACCAACGCTATATTTGGAA
CAAAGATCTCAATCCTGAATCCATACCAGAAGAAAAGGTCATAAAAACCC
TAATATATGGTGTCAGATCAAGCTGTAACCAAGCTGTCTACGGTTTACGA
AAAGTTGGTCAATTGTCAAAGGAAGAATACCCTGATGTCAATCAAACTAT
CCAGGACGACATTTATGTGGATGATTGCATTTCTGGGGAAGACAACCAAC
AAGCTGCCCACCAACGAGCAGATGAGTTGGAGCTAGTCCTAAACAGAGGA
GGCTTCCGACTAAAAGGTGTTACATTCTCAGGGGAAGATCCACCAGATAA
CCTCACTGACGATGGAAATACCATTTTTGTTGGTGGAATGCGGTGGCATG
TGAAAGAAGATAAATTATCAATCAACATTGGTGATCTCAACTTCGCCAAG
AAGCAACGTGGGAAGAAACCGTCAAACACAATCAACATCATTCCAAAGCA
GCTCACCAGACGTCATTGTTCTTCAAAGGTCTCTGAAGTGTTCGACCTGA
CTGGCAAAGTCGCCCCAATCATCGCATCTCTGAAACTAGACGTTCAACAA
CTGGTTCTACGCAAGCTCGATTGGGATGATCCAATTCCTGAAGATCTTAG
ACCAATATGGGAGTCCAACTTTGAACTCATCAAAAGCATTGGCACCATCA
AGTTCAAACGTGCAATAGTTCCTGAGGACGCATTGAACCTTGACATCAAC
ACACTCAACTTTGGGGACGCCAGCAAATCAATGATCTGTTCCTGTGTCTA
CGCAAGATTCAAAAGACGAGACGGCTCATTCTCATGTCAACTTGTCTTTG
CTCGCACACGTGTTGTTCCCAAAGATATGAGCCTGCCGAGAGCCGAACTG
TATGCAGCTCTGACAACTGCTTACACTGGGGAAATAGTCAGAAGATCATT
CAAGAACTACCACAAGAGTTCCATCAAATTTACTGACAGTCAAATCTGCC
TTCACTGGTTATCAAACAACGAAAAACCATTGAAGCTCTGGACCAGAAAT
AGAGTTATTGAAACACTTAGATTCACAACCAAGGAAGAATGGTACTATGT
TCAATCTGAAGACATGGCAGCGAACATCGGTACAAGGAAAGGTGCCACCA
TCAATGATGTTAATCAAAACTCAACATGGATCAACGGATTTCCTTGGATG
ACACTACCTCAATCATCTTTTCCAATGCTTTCATCTGAAGAAATCAAACT
TAATGAAGCAGACTCATTTGAAGCCAAGAAAGAATTTGATGCCCACTTTG
TCAAACAAATACCAGATGTCAAAGACAGATACGCTTTCACTGGTTACCAC
ATCGACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052033-exon-scaffold_208-1491911889:355375..356884 | TCONS_00052033-exon-scaffold_208-1491911889:355375..356884 | Clytia hemisphaerica | exon |
| TCONS_00052033-exon-scaffold_208-1510915933:355375..356884 | TCONS_00052033-exon-scaffold_208-1510915933:355375..356884 | Clytia hemisphaerica | exon |
| TCONS_00052033-exon-scaffold_208-1575043694:355375..356884 | TCONS_00052033-exon-scaffold_208-1575043694:355375..356884 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:355375..356884 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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