Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053158 ID=TCONS_00053158|Name=TCONS_00053158|organism=Clytia hemisphaerica|type=transcript|length=1852bpRun BLAST on NCBI transcript from alignment at scaffold_226:500509..509305+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053158 ID=TCONS_00053158|Name=TCONS_00053158|organism=Clytia hemisphaerica|type=transcript|length=8797bp|location=Sequence derived from alignment at scaffold_226:500509..509305+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00053158 vs. Swiss-Prot (Human)
Match: METK2 (S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1) HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0 Identity = 281/378 (74.34%), Postives = 329/378 (87.04%), Query Frame = 2 Query: 209 FLFTSESVGEGHPDKLCDQVSDAVLDAHLKQDPDAKVACETIAKTGMVMVAGEISSKGIVDYQKVVRDTVRRIGYDHSSKGFDCNTMNVLVAVEQQSPEIAQSVHLEKDEKDIGAGDQGLMFGYATDETEELMPLTCVLAHKLNEKLAENRRNGTQPYLRPDTKTQVTVEYENDDGACKPLRVHTIVISTQHSEDVTTEKIRKDCLELVVKAVIPAKYLDDQTIYHIQPSGSFIIGGPMGDCGLTGRKIIVDTYXXXXXXXXXXXXXKDFSKVDRSAAYAARWVAKSVVAAGLARRCLLQVSYAIGIAEPLSVSVITYGTGKKTDAEILEIVKKNFDLRPGVIVKELDLKKPIYESTCTYGHF-KPGFTWEVPKKMNF 1339 FLFTSESVGEGHPDK+CDQ+SDAVLDAHL+QDPDAKVACET+AKTGM+++AGEI+S+ VDYQKVVR+ V+ IGYD SSKGFD T NVLVA+EQQSP+IAQ VHL+++E+DIGAGDQGLMFGYATDETEE MPLT VLAHKLN KLAE RRNGT P+LRPD+KTQVTV+Y D GA P+RVHTIVIS QH E+V +++R E V+KAV+PAKYLD+ TIYH+QPSG F+IGGP GD GLTGRKIIVDTYGGWGAHGGGAFSGKD++KVDRSAAYAARWVAKS+V GL RR L+QVSYAIG++ PLS+S+ YGT +K++ E+LEIVKKNFDLRPGVIV++LDLKKPIY+ T YGHF + F WEVPKK+ + Sbjct: 18 FLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY 395 The following BLAST results are available for this feature:
BLAST of TCONS_00053158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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