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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053185 ID=TCONS_00053185|Name=TCONS_00053185|organism=Clytia hemisphaerica|type=transcript|length=1088bp
AAGAAAGGGAAAtataagaagaagaaaaaacaaaaatgtcgTTGGATACG
AAAGTCTCGATAAAACATCGGATTCATGGCATAATCGGGCTCGTCCTCTC
TATCTTATGCTTCTTCTTCGCTAATTGTCTTGTCAAACTGGTTTATATCA
AAAACCCCGATATTCCGATATCGGGTTACCAAATCGTATTCATAAGATCA
ATCGTACAACTTGTGTTGGTAGCGATTCAGATGTTTAGAGAACCGATACA
TCCATTAGGAGGGTTTAAATGGAACAAACAGAAACTACTTTTACTTATTG
TGACGGGTGTATCAAACATTACGAACCAGATATTCATATGTGAAAGTACC
CGACACATAAGCCCTGGAGCTTTCCAGATAATCTTATCAACGGCACCAAT
ATTTGGACTTGTATTTGAATTGGTGGTCCTCAAAGAACGTTTTTATTTGA
TGAGATTCCAATTCGGCATGATAACAGTTGTCGGTGTCATAATCGCACTT
TACCCTGAATTCAAAACGCAAGAGTCGGTAGTCGGCATCATATACGGCTT
CATCGCGACCATCATGTATGCTGTATTTTGTGTCGGTGTGCGAACCAGCC
ATTTGTTACGTATTGAAAATTCagttattttgaatattttttatccAAGC
TGGATAGGAGCTGTTTCGACGCCGCTTTTAATCTTGATAGATCCATCCGC
TGTCACTATTCTAGACGGGTTACCTCTCACTTATTGGCTCGTTTTAATAA
TAGCTGGgctactttattatttgaattttgCTGGATTTATATTCGGTATG
AAGTATAACAGTCCGTTTGTTTCTATGGTGATTATAGACTGTTTCCCAGT
CATCCTAGCATACATTTATATGGTTGTTGTTGATAAGTATGACAGTCACG
CATCTTCATTGGTTGTTGGTATGCtattaattttctttggttGTTTTGCT
ATGACTTTATCAAGtgtttttgaaatcaaaacttGGAAAGAATTACACAA
TAATGTATTTCGTAAGAATAGTTTATAACTCTAGTGCCTATTGTATAAAG
AATAAAATAATCAACAtgttgggctgttccattaaaaa Run BLAST on NCBI protein sequence of TCONS_00053185-protein >TCONS_00053185-protein ID=TCONS_00053185-protein|Name=TCONS_00053185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MSLDTKVSIKHRIHGIIGLVLSILCFFFANCLVKLVYIKNPDIPISGYQI
VFIRSIVQLVLVAIQMFREPIHPLGGFKWNKQKLLLLIVTGVSNITNQIF
ICESTRHISPGAFQIILSTAPIFGLVFELVVLKERFYLMRFQFGMITVVG
VIIALYPEFKTQESVVGIIYGFIATIMYAVFCVGVRTSHLLRIENSVILN
IFYPSWIGAVSTPLLILIDPSAVTILDGLPLTYWLVLIIAGLLYYLNFAG
FIFGMKYNSPFVSMVIIDCFPVILAYIYMVVVDKYDSHASSLVVGMLLIF
FGCFAMTLSSVFEIKTWKELHNNVFRKNSL Run BLAST on NCBI transcript from alignment at scaffold_226:93134..94221 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053185 ID=TCONS_00053185|Name=TCONS_00053185|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at scaffold_226:93134..94221 (Clytia hemisphaerica)
tttttaatggaacagcccaacaTGTTGATTATTTTATTCTTTATACAATA
GGCACTAGAGTTATAAACTATTCTTACGAAATACATTATTGTGTAATTCT
TTCCaagttttgatttcaaaaacaCTTGATAAAGTCATAGCAAAACaacc
aaagaaaattaataGCATACCAACAACCAATGAAGATGCGTGACTGTCAT
ACTTATCAACAACAACCATATAAATGTATGCTAGGATGACTGGGAAACAG
TCTATAATCACCATAGAAACAAACGGACTGTTATACTTCATACCGAATAT
AAATCCAGcaaaattcaaataataaagtagcCCAGCTATTATTAAAACGA
GCCAATAAGTGAGAGGTAACCCGTCTAGAATAGTGACAGCGGATGGATCT
ATCAAGATTAAAAGCGGCGTCGAAACAGCTCCTATCCAGCTTggataaaa
aatattcaaaataactGAATTTTCAATACGTAACAAATGGCTGGTTCGCA
CACCGACACAAAATACAGCATACATGATGGTCGCGATGAAGCCGTATATG
ATGCCGACTACCGACTCTTGCGTTTTGAATTCAGGGTAAAGTGCGATTAT
GACACCGACAACTGTTATCATGCCGAATTGGAATCTCATCAAATAAAAAC
GTTCTTTGAGGACCACCAATTCAAATACAAGTCCAAATATTGGTGCCGTT
GATAAGATTATCTGGAAAGCTCCAGGGCTTATGTGTCGGGTACTTTCACA
TATGAATATCTGGTTCGTAATGTTTGATACACCCGTCACAATAAGTAAAA
GTAGTTTCTGTTTGTTCCATTTAAACCCTCCTAATGGATGTATCGGTTCT
CTAAACATCTGAATCGCTACCAACACAAGTTGTACGATTGATCTTATGAA
TACGATTTGGTAACCCGATATCGGAATATCGGGGTTTTTGATATAAACCA
GTTTGACAAGACAATTAGCGAAGAAGAAGCATAAGATAGAGAGGACGAGC
CCGATTATGCCATGAATCCGATGTTTTATCGAGACTTTCGTATCCAAcga
catttttgttttttcttcttcttataTTTCCCTTTCTT Coding sequence (CDS) from alignment at scaffold_226:93134..94221 >TCONS_00053185 ID=TCONS_00053185|Name=TCONS_00053185|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_226:93134..94221 (Clytia hemisphaerica)
TTATAAACTATTCTTACGAAATACATTATTGTGTAATTCTTTCCaagttt
tgatttcaaaaacaCTTGATAAAGTCATAGCAAAACaaccaaagaaaatt
aataGCATACCAACAACCAATGAAGATGCGTGACTGTCATACTTATCAAC
AACAACCATATAAATGTATGCTAGGATGACTGGGAAACAGTCTATAATCA
CCATAGAAACAAACGGACTGTTATACTTCATACCGAATATAAATCCAGca
aaattcaaataataaagtagcCCAGCTATTATTAAAACGAGCCAATAAGT
GAGAGGTAACCCGTCTAGAATAGTGACAGCGGATGGATCTATCAAGATTA
AAAGCGGCGTCGAAACAGCTCCTATCCAGCTTggataaaaaatattcaaa
ataactGAATTTTCAATACGTAACAAATGGCTGGTTCGCACACCGACACA
AAATACAGCATACATGATGGTCGCGATGAAGCCGTATATGATGCCGACTA
CCGACTCTTGCGTTTTGAATTCAGGGTAAAGTGCGATTATGACACCGACA
ACTGTTATCATGCCGAATTGGAATCTCATCAAATAAAAACGTTCTTTGAG
GACCACCAATTCAAATACAAGTCCAAATATTGGTGCCGTTGATAAGATTA
TCTGGAAAGCTCCAGGGCTTATGTGTCGGGTACTTTCACATATGAATATC
TGGTTCGTAATGTTTGATACACCCGTCACAATAAGTAAAAGTAGTTTCTG
TTTGTTCCATTTAAACCCTCCTAATGGATGTATCGGTTCTCTAAACATCT
GAATCGCTACCAACACAAGTTGTACGATTGATCTTATGAATACGATTTGG
TAACCCGATATCGGAATATCGGGGTTTTTGATATAAACCAGTTTGACAAG
ACAATTAGCGAAGAAGAAGCATAAGATAGAGAGGACGAGCCCGATTATGC
CATGAATCCGATGTTTTATCGAGACTTTCGTATCCAAcgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053185-exon-scaffold_226-1491911889:93134..94221 | TCONS_00053185-exon-scaffold_226-1491911889:93134..94221 | Clytia hemisphaerica | exon |
| TCONS_00053185-exon-scaffold_226-1510915933:93134..94221 | TCONS_00053185-exon-scaffold_226-1510915933:93134..94221 | Clytia hemisphaerica | exon |
| TCONS_00053185-exon-scaffold_226-1575043694:93134..94221 | TCONS_00053185-exon-scaffold_226-1575043694:93134..94221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:93134..94221 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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