TCONS_00053206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053206
Unique NameTCONS_00053206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053206 ID=TCONS_00053206|Name=TCONS_00053206|organism=Clytia hemisphaerica|type=transcript|length=1174bp
GGGCGTGATTGTTGTCTCTAATGACAATGACCTTCGGTTTCTCGGACCAA
GCAGAAGACAACAACTACCATTAAGGCAGATTGATCTGAATACCTTGAAT
CTTCTCAATTCATCAACATCGTCATTGCCATTTTCAACTCAAACCTCAAA
CCCCCTGACCAATAACCTTACTCAAGCTGTAACATCTTCCCGTTCAAACA
GAACACAACAATCGATGTCTTCAACTCTAACATCATTTTCCCGTCCAAAC
TTAACACCATCACCATCATCAGCCGCTCACCAAAACTGGACATCCGTAac
aacatcatcatcatcatcatcatcatcaacaacaacaacctcgAATTTGC
TGCAAAGGGTTACAACCACACAACCAATTTCTGCCTCCTCCATTGTTGTG
CGTTCTCTGACATCGTCAACATTCCGAACTCAAATATTCCTATTCAACCT
TTCACCTTTGATGAGGACCTGGACATGTCTGAAATAGAGATATCTCAAAT
CAGACaaagaattcttttgaaattccaCAGATGTCTCGAAATCAATATTC
GCCGGACACATCTTTTTGAGGATGTTATAAACATCTTTAAAGAAATGACT
GGATTTTCCGAAATCAAGGGAAGCACAGCATGGATCTATCTGGCAGCTTT
ATTTCTTCCTTTGAATCAAGTACCAGAGAGTTTTTCACGTCATGTCTCAC
AAAATCCGAACTTTTGTATGAAGAAAGGGTTAGACTGACAAATACCCTAG
CAAGTTATGAGTGTCAGTCACTCTTGAGTGTCGATTCATTGAAATCGGTT
ATTCAAACATTGGCACACTTCATACTTGTGGTAAAGCCGTTTCATGCGTG
TGCCTTGATGAGAGATGGAGCTGAGGTGATCTCCAAAGATTTCGATATGT
TGACAGAGGAATGTCTTCAAGGCTACGCTAAAGCAATGAGACCAAATGGA
AGCGATATTATTGAAAAGTTGAAGCCAACCTTTGATTCAGAAagtcaaat
ctttaaaaaagctgAGCAGCGTTGTTTTGTTTTCCTTCAAAACTTTATCG
AGGAGCTCTCACAATCCGAGGCGTCAATTTTTATGAAGTTTGTGACTGGT
ATGGAGATGATGCAGGAGAAAATAAATGTTACTTTTAATGGTCAAGACAA
TCCACAGATGATGTTGCCACGAGC
Run BLAST on NCBI

protein sequence of TCONS_00053206-protein

>TCONS_00053206-protein ID=TCONS_00053206-protein|Name=TCONS_00053206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MDLSGSFISSFESSTREFFTSCLTKSELLYEERVRLTNTLASYECQSLLS
VDSLKSVIQTLAHFILVVKPFHACALMRDGAEVISKDFDMLTEECLQGYA
KAMRPNGSDIIEKLKPTFDSESQIFKKAEQRCFVFLQNFIEELSQSEASI
FMKFVTGMEMMQEKINVTFNGQDNPQMMLPR
Run BLAST on NCBI

transcript from alignment at scaffold_227:175747..177265+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053206 ID=TCONS_00053206|Name=TCONS_00053206|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at scaffold_227:175747..177265+ (Clytia hemisphaerica)
GGGCGTGATTGTTGTCTCTAATGACAATGACCTTCGGTTTCTCGGACCAA
GCAGAAGACAACAACTACCATTAAGGCAGATTGATCTGAATACCTTGAAT
CTTCTCAATTCATCAACATCGTCATTGCCATTTTCAACTCAAACCTCAAA
CCCCCTGACCAATAACCTTACTCAAGCTGTAACATCTTCCCGTTCAAACA
GAACACAACAATCGATGTCTTCAACTCTAACATCATTTTCCCGTTCAAAC
AGAACACAACAATCAATGTCTTCAACCCTAACATCATTTTCCCGTCCAAA
CTTAACACCATCACCATCATCAGCCGCTCACCAAAACTGGACATCCGTAa
caacatcatcatcatcatcatcatcatcaacaacaacaacctcgAATTTG
CTGCAAAGGGTTACAACCACACAACCAATTTCTGCCTCCTCCATTGTTGT
GCGTTCTCTGACATCGTCAACATTCCGAACTCAAATATTCCTATTCAACC
TTTCACCTTTGATGAGGACCTGGACATGTCTGAAATAGAGATATCTCAAA
TCAGACaaagaattcttttgaaattccaCAGATGTCTCGAAATCAATATT
CGCCGGACACATCTTTTTGAGGATGTTATAAACATCTTTAAAGAAATGAC
TGGATTTTCCGAAATCAAGGTAAAATTTGAGGGAGAAATGGGCGTAGACG
AGAGGTCTAACCAGAGATTTACTCTCTGAGTTTTGGAAAGAGTTTGGTGA
GCGATTTGGTAAAGGCAGTGACCAACTTTTGTTTCATACAACTGCTATGA
AATATCTTGAGGATGATGAATTTGTGAAAGGTTTTCATGGTTGNACTGCA
ATGAAATATCTTGAGGATGATGAATTTGTGAAAGGTTTTCATGGttggtt
ttatttttgttgggTTCCTTCCTTTTAGAATGAACAAATCATTTCTCCTC
TTCTTGCTGACAGGGAAGCACAGCATGGATCTATCTGGCAGCTTTATTTC
TTCCTTTGAATCAAGTACCAGAGAGTTTTTCACGTCATGTCTCACAAAAT
CCGAACTTTTGTATGAAGAAAGGGTTAGACTGACAAATACCCTAGCAAGT
TATGAGTGTCAGTCACTCTTGAGTGTCGATTCATTGAAATCGGTTATTCA
AACATTGGCACACTTCATACTTGTGGTAAAGCCGTTTCATGCGTGTGCCT
TGATGAGAGATGGAGCTGAGGTGATCTCCAAAGATTTCGATATGTTGACA
GAGGAATGTCTTCAAGGCTACGCTAAAGCAATGAGACCAAATGGAAGCGA
TATTATTGAAAAGTTGAAGCCAACCTTTGATTCAGAAagtcaaatcttta
aaaaagctgAGCAGCGTTGTTTTGTTTTCCTTCAAAACTTTATCGAGGAG
CTCTCACAATCCGAGGCGTCAATTTTTATGAAGTTTGTGACTGGTATGGA
GATGATGCAGGAGAAAATAAATGTTACTTTTAATGGTCAAGACAATCCAC
AGATGATGTTGCCACGAGC

Coding sequence (CDS) from alignment at scaffold_227:175747..177265+

>TCONS_00053206 ID=TCONS_00053206|Name=TCONS_00053206|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_227:175747..177265+ (Clytia hemisphaerica)
ATGGATCTATCTGGCAGCTTTATTTCTTCCTTTGAATCAAGTACCAGAGA
GTTTTTCACGTCATGTCTCACAAAATCCGAACTTTTGTATGAAGAAAGGG
TTAGACTGACAAATACCCTAGCAAGTTATGAGTGTCAGTCACTCTTGAGT
GTCGATTCATTGAAATCGGTTATTCAAACATTGGCACACTTCATACTTGT
GGTAAAGCCGTTTCATGCGTGTGCCTTGATGAGAGATGGAGCTGAGGTGA
TCTCCAAAGATTTCGATATGTTGACAGAGGAATGTCTTCAAGGCTACGCT
AAAGCAATGAGACCAAATGGAAGCGATATTATTGAAAAGTTGAAGCCAAC
CTTTGATTCAGAAagtcaaatctttaaaaaagctgAGCAGCGTTGTTTTG
TTTTCCTTCAAAACTTTATCGAGGAGCTCTCACAATCCGAGGCGTCAATT
TTTATGAAGTTTGTGACTGGTATGGAGATGATGCAGGAGAAAATAAATGT
TACTTTTAATGGTCAAGACAATCCACAGATGATGTTGCCACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033587XLOC_033587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053206-exon-scaffold_227-1491911889:175747..175977TCONS_00053206-exon-scaffold_227-1491911889:175747..175977Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1510915933:175747..175977TCONS_00053206-exon-scaffold_227-1510915933:175747..175977Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1575043694:175747..175977TCONS_00053206-exon-scaffold_227-1575043694:175747..175977Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1491911889:176029..176415TCONS_00053206-exon-scaffold_227-1491911889:176029..176415Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1510915933:176029..176415TCONS_00053206-exon-scaffold_227-1510915933:176029..176415Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1575043694:176029..176415TCONS_00053206-exon-scaffold_227-1575043694:176029..176415Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1491911889:176710..177265TCONS_00053206-exon-scaffold_227-1491911889:176710..177265Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1510915933:176710..177265TCONS_00053206-exon-scaffold_227-1510915933:176710..177265Clytia hemisphaericaexon
TCONS_00053206-exon-scaffold_227-1575043694:176710..177265TCONS_00053206-exon-scaffold_227-1575043694:176710..177265Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053206-proteinTCONS_00053206-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:175747..177265 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.38217	4.55451	5.42682	9.009	2.12747	4.35928	4.80646	2.5737	2.41904	2.21284	0.0452868	0.0569853	0	0.0986323	0.137434	0.0817919	0	0	0	0	1.58052	3.77718	0	0	0.0408057	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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