TCONS_00053231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053231
Unique NameTCONS_00053231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053231 ID=TCONS_00053231|Name=TCONS_00053231|organism=Clytia hemisphaerica|type=transcript|length=1135bp
TATTGGCCAAAAACAAATTTCCATCTGCTAATGAAACAACGTGCTCCACC
AAAAGAAACGTGGTATCAAATTGCAGATCACTCTATCTTGTATACTGgga
gTTATGAAAGCTGTATCGCCATCGACAGCTCAACTGAAACTGAAGGTGAA
GTTGGAGACGAGTTGCAAGCTGGCAAAGTGAACGACGTGAGCTTTTCCAG
TGAGGAGTCCGATGCAGAGTCCGATTTGGGTGGAGATTATCTCAATGGCA
CTGGTGGAAACGTTCCTTTGTTTCCTCAAAAGTACGCATCGCCAAAAGAT
GGACTCTCGATCAAACCGGATGGTACTTCAAATTCCAAACAGACACCTGG
TGcttcaaatttaatttctaaGCTGAATTCATCGAATCCTGATGCGAGGC
ATCAACAAAAGTCGATTCAACTTTCATCTCCGAACTCATTGAACGAATCT
TCACCGGTTTTACCGAACTATCTTGGTGGAACTCCTAAAGCCGTCAAAAG
ATCCGCATCAAGAACAATTCAAAATGTTGTACGATCGGCAAAACAAGATC
ATGACAGAAATTGTGAAATTAAGAGCACACATCGACAACAAGATGGCATC
TCTTCCCATCGAAGACGATCAATTCCAGCTTCCAGAAGTAAACAGCCAAC
AAGAAATGGATACCTTGGAAGAAAATCTAAATGATCCTGATTTCTTAGCA
AAGTTTaaatctcGTATCGCACGAATTGGCGGGGTTGAATATGGTGATGC
TACAATTCTAGTGATGGAAAAattttttacaAGAGCTTTCTTAAGCACCT
GCAACATGGAAGGAAACAACGGGAAGTTTGCCTTCAAGAAATCCAAGGCT
TATTCTGCAATTAGTGATGTTCTAGTGAAAAAGTATGGCACAACGGAAGA
TAATGTTGGGAAGAAAGTTGCCAACAAATTACGAAACGCCCCTGGACAGA
AAGGTGGACTTGGCAGAAAGAAGTAGaaagtttatttatttattttattt
ttatgtgtaGATTTGAATAGGGTTTTGCTTACTACTTCCCATAATAAAAC
ATGGACCTGACTggattaatttttatttttgttaagtCACAATATAACAT
TGAATTCAAGGATTCTTAGCCAAAGTAGCACTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_227:101072..105562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053231 ID=TCONS_00053231|Name=TCONS_00053231|organism=Clytia hemisphaerica|type=transcript|length=4491bp|location=Sequence derived from alignment at scaffold_227:101072..105562- (Clytia hemisphaerica)
TATTGGCCAAAAACAAATTTCCATCTGCTAATGAAACAACGTGCTCCACC
AAAAGAAACGTGGTATCAAATTGCAGATCACTCTATCTTGTATACTGGTA
ATTATCTTTAATCAAGTCATTTTATAACCGTTTAGTTGCTCTAATTAAAA
AAAGACACTTAAAAATCTTTGTCTTACAATAATGGAATCTTTCATTCATT
TTAACTTCTCGTCCTAAATTTCCAGTTTTTTTGTTTTAAGGGAGTTATGA
AAGCTGTATCGCCATCGACAGCTCAACTGAAACTGAAGGTGAAGTTGGAG
ACGAGTTGCAAGCTGGCAAAGTGAACGACGTGAGCTTTTCCAGTGAGGAG
TCCGATGCAGAGTCCGATTTGGGTGGAGATTATCTCAATGGCACTGGTGG
AAACGTTCCTTTGTTTCCTCAAAAGTACGCATCGCCAAAAGATGGACTCT
CGATCAAACCGTATGTATTAATATCATATGTTTAAGTGTTACAATTGGAG
AGTTATAATCATCGAAGAGCACTTCATTTTAATCCTTCTTGAATGAAATT
TGAATTTGGTCTGTTTCTTTTTTTACATTAAAATCCAAACTTCGAATCTT
CAAATATTATTTTAATATAAAATTCATTCTTCTAAGTATAAATTTGACCA
GGGATATTTCAATATTGCATTATTTTTCATACAGGGATGGTACTTCAAAT
TCCAAACAGACACCTGGTGCTTCAAATTTAATTTCTAAGCTGAATTCATC
GAATCCTGATGCGAGGTGAATAATATTATAATAATTGAGTCCAAATTTAA
TTCATAATACCTTATTACACAAATATTACTAGTCATTTTATTAACGCGAA
CTGAAAAATTTCGTGTTAATTTTTTGCGTGTTAATTTCAAGGCCGTTGAA
TAGTTGCCTAGTAATATTCGTGTAATAAGGTAGTAATAGTAGAAATAAAA
TTATGAAAATATTTTAAAAGTATATAGATTTCAGTACAATTCTAACAATT
GTATTATTGGTGTTCTTGGTAATTAGATATTGGTATCAAGGCTGTACACA
TCCCCTAAAAAGATTTTAGATATAATTTTTTGGCCTATATCGTAGGCTTT
AGTAGATTTATAAAATAATTTTGTTAAATTTACGTTTGTTTTAGGCATCA
ACAAAAGTCGATTCAACTTTCATCTCCGAACTCATTGAACGAATCTTCAC
CGGTTTTGTAAGTTGACTAAACTATTTCGTCGTAATGTCAGGGCTCTGTC
CATACACACTTTTTTAATAAGAATAGTGTACTTTGGCTGATGTTGTGCAT
TAATCTTCTTTTTCTATTGTTCTAAACAGTAGTACTTTTCCTACATTTTT
TACCCACTATAGTCGGAGCCCTTAATACTTTTGAATTTTGAACTCATTTA
ATTTGGACTGCAGTTGTGATTTAGTGATGATAAAAAAGTGATACCCTTTG
ATACCATTTGATACCCATTTTGACGTTTATGATGACTTCGAACCTCCATA
TATCGATAAGATATCAGGAATAAAAAAGTGATGGTTTAATATTTAAGACA
GAGTACACCCTTTTTAAGATGAAAAAACAAATTATACCGTGTGTATTTTT
GGATACAAATCTTTATACTTATACTAAATCTTTTCAGACCGAACTATCTT
GGTGGAACTCCTAAAGCCGTCAAAAGATCCGCATCAAGGTAATTTCTGAA
TAAATAGTCATTGAGGTACTCCAAAAGCATAGGGAATTTATGATTCACAT
TTTGTCTTTTTTAACAGAAGCAATGTTTTAGCACTTAAAGGTCATAACTT
TTGATGTAGTTAACCAAATTTGATAAATTACCCCTCAAAATATATTCCAA
TAGATCAATTTATTATTTGGTTCTTCAGGGTATTCCTTCAATAGTATTCG
TTTTATTTATTAGAAGACAAGAAGAAGAGGAGAGCTTGGAACTTATTGAT
GCGGCGAAGATTATGGGTCAGTTTATGTTAGTTTTGTGTACTCCTAGCGA
AGTCCTGATATACAGTTTTCTTTGTAAAGCTAATGTGATATTATAGGAGT
CAGAAATTTTGATTTTAGTAATAAACTAAATTTTAAGACATCTCTGTCAG
GAAATTAAGCATTAAANGATTTTAGTTATAAACTAAATTTTAAGACATCT
CTGTCAGGAAATTAAGCATTAAAAACGTTTGTCAGGGACCGATGGTTTAG
TCTTGAAAATGCTCTTTCTGTAAACAGTTTTTATGAAATGTGTTGACTTT
TATAAGAACATTCACGAGCCTTAAATTTGGCAAAGAAACTAAGAACAAGC
TCAGCCTCGGAATTTTCTGAGAACTTTTAAAAGCAACCTTTTTTTGGCAC
TGTTAATACAGAAAGGGATGTTTTCCAGAATATTTTACTCTTTTTCAGCA
AAAAGCTTGTTTAGAAGATTTTCAAGGTTTTTTTGAAGATAGAAGTTTTG
CTTTGGAAATAATGAAGGTTGCAAAGTACTGTCAAAAAGAACATTAAGAA
CAGCTGAATAACATGAAGCCTTAAAATTCCCAAAACTTAAGAACAATTGA
GCCTTAGTCAAAATTTACTGGTTCTTTTAAAAAGTGATTGTAGTTCATCA
GTTAAGGCCTTTGAATTTTGTCAATGCATTGCTTAAAAAGCTAACTTCTG
TCTTTTCTATCTTCAGAACAATTCAAAATGTTGTACGATCGGCAAAACAA
GATCATGACAGAAATTGTGAAATTAAGAGCACACATCGACAACAAGATGG
CATCTCTTCCCATCGAAGACGATCAATTCCAGCTTCCAGAAGTAAACAGC
CAACAAGAAATGGATACCTTGGAAGAAAATCTAAATGATCCTGATTTCTT
AGCAAAGTTTGTAAGTATGATTAATTCAGTTAATTTCAATTTAGCTGTCA
GAAAAAACGAAATTCAAATCCCCAGCCATAAAAGATATGGGAATATCGAT
CCCCATTGAGTTTTGGTCCGTTACTTTTACCTCCACTAGCTAATAAAATC
CCACCGGGTCTGTGAGAAGGGGGTATCTGATTAACACCAAAAAACAGCGA
ACAACAAACATCCTGTTTCATCATAGTAAATTATGTGAAGACTTTGTGTC
ATATCTTTGCACTGAGTAGATGCTTTTGAACGTTTTTTCACAGTGATTAT
GCTCTGAAATTGAAGAATTACCTCTTTGAAAATGGTGATAATATCTCAGT
AAATTTTTCTTTTTTCTTATCTATATCTTCATTTTGAAAGATTTTTTCAA
CTTTCTTTTTGATAATATCCACTTCCGGGTTAACTTTTCGACCGGCACCT
GCATCTCTATCAAATTGAAGGTGAAATTAAATTCGATCTCTTTTTATAGA
AATCTCGTATCGCACGAATTGGCGGGGTTGAATATGGTGATGCTACAATT
CTAGTGATGGAAAAGTAAGTAGTGATAAAAGAGATCCTTCGGTCTTCTAG
ATATTTAAATGTCTAATAACAAAGATCTTTCAATACTGAAAACGATAGTG
CTTCAAATCTTGAGATGGTGATTTTCAGTTCATAGTTCTGAAAGTTTTCT
GACTACTGGTTTTGTACGTCCGATGTTTATTATGCATGGTTCTTCAACGA
GGCAAAGGAAAACAATGCTCTATTTAATTGCAACATTTTTTAAATAAAAA
GACTTTTCCTTTTTGTTTTTTTCCATCGTGCATTTCGAACTTTAAATTAA
AGTTAACTAAACAAAGACCAAGTTTTTTCCCAAATGGGGTAGATCCTAGT
GGGTCACTGAGGCAGGGGTGTTGTGTTATATCGTTCTCTTTAAAAAATCA
CAATTCAAAATACATAGATCATTTTCAAAACTTTTTTTCTTTAGATTTTT
TACAAGAGCTTTCTTAAGCACCTGCAACATGGAAGGAAACAACGGGAAGT
TTGCCTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGGTAATTTGTTT
CTACTTTTTAAAATTTAGTGACTGGTTGATTCTAATGAATAATCAAATAA
AAAAGAAGGCTGTTTCTTACAATCAATCAAGCCCAATCTAGTGTACCAAA
TATCTATCCTACGAAGAAGATTTTAATGATCTCAATAGGTTTCTCAGATT
AAGAAAGTAAGGTGACTGATATCTATTCTTGTTTTATTTTTCCCTGTGTT
AATGTTTTTGTCGGTTTTGCCAACAAATCTCTCTCTCTAAAGATTTTACT
ATTATTTTATTTCTTTCAATAGATGTTCTAGTGAAAAAGTATGGCACAAC
GGAAGATAATGTTGGGAAGAAAGTTGCCAACAAATTACGAAACGCCCCTG
GACAGAAAGGTGGACTTGGCAGAAAGAAGTAGAAAGTTTATTTATTTATT
TTATTTTTATGTGTAGATTTGAATAGGGTTTTGCTTACTACTTCCCATAA
TAAAACATGGACCTGACTGGATTAATTTTTATTTTTGTTAAGTCACAATA
TAACATTGAATTCAAGGATTCTTAGCCAAAGTAGCACTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033599XLOC_033599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053231-exon-scaffold_227-1575043694:105466..105562TCONS_00053231-exon-scaffold_227-1575043694:105466..105562Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:105103..105322TCONS_00053231-exon-scaffold_227-1575043694:105103..105322Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:104798..104878TCONS_00053231-exon-scaffold_227-1575043694:104798..104878Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:104356..104418TCONS_00053231-exon-scaffold_227-1575043694:104356..104418Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:103875..103925TCONS_00053231-exon-scaffold_227-1575043694:103875..103925Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:102703..102896TCONS_00053231-exon-scaffold_227-1575043694:102703..102896Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:102149..102213TCONS_00053231-exon-scaffold_227-1575043694:102149..102213Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:101624..101718TCONS_00053231-exon-scaffold_227-1575043694:101624..101718Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1575043694:101072..101340TCONS_00053231-exon-scaffold_227-1575043694:101072..101340Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:105466..105562TCONS_00053231-exon-scaffold_227-1510915933:105466..105562Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:105103..105322TCONS_00053231-exon-scaffold_227-1510915933:105103..105322Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:104798..104878TCONS_00053231-exon-scaffold_227-1510915933:104798..104878Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:104356..104418TCONS_00053231-exon-scaffold_227-1510915933:104356..104418Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:103875..103925TCONS_00053231-exon-scaffold_227-1510915933:103875..103925Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:102703..102896TCONS_00053231-exon-scaffold_227-1510915933:102703..102896Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:102149..102213TCONS_00053231-exon-scaffold_227-1510915933:102149..102213Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:101624..101718TCONS_00053231-exon-scaffold_227-1510915933:101624..101718Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1510915933:101072..101340TCONS_00053231-exon-scaffold_227-1510915933:101072..101340Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:105466..105562TCONS_00053231-exon-scaffold_227-1491911889:105466..105562Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:105103..105322TCONS_00053231-exon-scaffold_227-1491911889:105103..105322Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:104798..104878TCONS_00053231-exon-scaffold_227-1491911889:104798..104878Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:104356..104418TCONS_00053231-exon-scaffold_227-1491911889:104356..104418Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:103875..103925TCONS_00053231-exon-scaffold_227-1491911889:103875..103925Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:102703..102896TCONS_00053231-exon-scaffold_227-1491911889:102703..102896Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:102149..102213TCONS_00053231-exon-scaffold_227-1491911889:102149..102213Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:101624..101718TCONS_00053231-exon-scaffold_227-1491911889:101624..101718Clytia hemisphaericaexon
TCONS_00053231-exon-scaffold_227-1491911889:101072..101340TCONS_00053231-exon-scaffold_227-1491911889:101072..101340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:101072..105562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.41976	0	0.99157	0.751789	1.05269	1.24609	0.632812	1.08156	1.13413	1.01202	0.348085	0.630364	0	0.317474	0.244365	0	0	0	0.131786	0	0.699031	0.682089	0	0.082278	0.187215	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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