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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053238 ID=TCONS_00053238|Name=TCONS_00053238|organism=Clytia hemisphaerica|type=transcript|length=1154bp
CAAAGATGAACTGAAAAAAAAGGTTGACATTGCAATTTATTAAAATAGTA
CAGCTTCTAAATGATGGAGATATCAGTTCAGAAAACACTAAGATCTGGTC
CACGGATATTGTTACAAGCTGTGCGTTTCTTGGTAGTCTGGATGAAAGCA
TCTTTGTTTATCGAGACAATTCCTTTCAAGTTGTTACACAGGATTTTCGC
CATAGAGGTCTTTTTCAATTCGTTACGTTGTTCTGGTGTAAAAACACCAC
GGTTGAGATAGAAATAACGATCACCGTCCCTCAGACGTCTGAATTGGTGT
TTAAATAGACAATGGAAAGTGGGACCTGTTTGGAATCCTGGTACGTGATT
TTCCGAAATCCCAGCCGCGAAAAGATCAATATCTGCTGGCTGGTTATATA
GGGTAGAGAATTTCTGAACAACTCCACTGGGCATGTGTTTGGCAAGCTCG
CTGAAAGATGGGATGGCTGGCAGATTGCAGAACTGTCTCCATTTTCCGTA
TGTTGGCAATCCATGATCACGACCTCTTTGGATGTTGAGAGCTGTCAAAT
CCATATGGCCTTCTTCACCAGGCGGGACGAATAACTTTCGGAGCAATCCA
AAAGCAAAAATATCATCGACTGTATTTGATTGGTTTCCAACGAGACCTAA
CATGGTTGGTTCAATTCCTCTCTGATTGATGCTTTGAATATTAAAGAAAG
ATTCTCGAAGACTgatcttttcaaatttcttatcAAAATTGTTGTCAAGT
TGACTCCATGCGTTTGGTGCTAAACTGTGACCAAATCTGAAAGCTGCAGC
GGCAAAAGCATTAATGATTCTTGGATCTAGTCCAGAATTATATCCTCCAT
AAGATCCAAGATCAACAATTCGCGGTATCCATTCATTGAAAACAACATGT
TGCCATTGAGCGATAACAATCTTTCGAGATTCTTGGTATAGCTTCTCCTC
ATTCCAGTGGTAATTGAATTGTCTTAATTTGGTGGCCACTCTGTTATGCT
CTCGAACCCAAGTTGTGTGCATAGAGTGTAGAGCAATGTTTTCATCAGCT
CTAATATCACCAGCAAGAGAACATCCTTCTAGAAGATCGCATGGGGTAGT
GAACTGTTTAAGAGGTAGTAAATCTCCACTTCGAGTCTTCAATTTACCAG
TACC Run BLAST on NCBI transcript from alignment at scaffold_227:354370..369421- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053238 ID=TCONS_00053238|Name=TCONS_00053238|organism=Clytia hemisphaerica|type=transcript|length=15052bp|location=Sequence derived from alignment at scaffold_227:354370..369421- (Clytia hemisphaerica)
CAAAGATGAACTGAAAAAAAAGGTTGACATTGCAATTTATTAAAATAGTA
CAGCTTCTAAATGATGGAGATATCAGTTCAGAAAACACTAAGATCTGGTC
CACGGATATTGTTACAAGGCGTGCGTTTCTTTGAAGTCTGGATGAAAGCA
TCTTTGTTGATTGAGACTATTCCTTTCAAGTTGTCACACAGGATTTTCGC
CATTGAGGTCTTCTTCAATTCATTCCGTTGTTTTGGTGTAAAAACTCCAC
GGTTGAGATAATAATAACGATCACCATCCCTCAGGCGTTCGAATTGCCGA
CGAAACAGACATTGGAAGGTGGGACCTGTTTGGAAGCCTCGCACATGGTG
CTCTGAAATGCCAGCCGCAAAGAGATCAATATCTGCTGGCTTCTTATACA
GGGTTGAGAACTTTTGGGCAACTTCTCTTGGCATCACTCTGGCCAGTTGA
CGGAAATTTGTGATGGCCGGTAGTCTGCAGTATCTTCTCCAGCGTCCGTA
TGTTGGCAATCCATGGTCACGACCCCTTTGGATGTTGAATGCTGTCAAAT
CCATATGGCCTTCTTCACCAGGTGGGACAAATAATTTCCGGAGCAATCCA
AAAGCGAACACATCGTCGACTGTGTTTGATTGATTTCCAACAAGACCAAA
CATGGTTGGTTCAATTCCTCTCTGATTGATGCTTTGAATGTTAAAGAAAG
ATTCTCGAAGACTGATCTTTTCAAACTTCATATCAAAATTATTGTCAAGT
TGACTCCATGCGTTTGGTGCTAGACTGTGACCGAATCTGAAAGCAGCTGT
TGCAAATGCATTAATAATGCTGGGGTTCAATTTCGAGTTATATCTTCTAT
ATCTTCCAAGATCAACAATTCGAGGTACCCATTCATTGAAAACAACATGT
TGCCATTCAGCGATAACAATCTTTCTAGCTTCCTGGTATAGCTTCTCTTC
TCTCCAATGGTAGTTAAATAATCTTAGTTGGGAAGCTACTCTGTTGTGCT
CGCGTACCCAAACGGTATGCATTGAGTGTAGAGCAATGTTTTCGTCAGCT
CTGATATCACCAGCCAGGGAACAACCCACTAGAAGATCACATGGAGTTGT
TAACCTCTTCAGAGGTATAAGATCACCTCTTCTGGTTCTTAATTGACCAC
TACCTGCAAGATAATAAGTTTTTACATTTTAAATGGATAGCCTTGAAGAT
ATTTAAAGAAACACCCCAATCCATTTAAGCAATCTACTTAGATTTTCCTA
CCTAGTAGGAATTTAAATGCCAATGGAGATGTGGATACAAACTTATAAGC
ATCTTTCCCAGTAAGGATGAGAGTTCAGCGTAGTTCTTAATGCAGATAAA
TTTTCAGGGTGCTCTTCTCATAGGGGAAAGATCTCTTTGCTGAATTCTTT
CAGCGAGTAAAACAATCCCACAATGCATCGCTTTTTTAGGAAAAAAACTC
CGATAAGGTCTATTTAGATCCATCCAGTCCTTAGCCTGAATCAAAAACCT
CTACAAAAATGCCAATAATATATTGATAAAGAGATCTAAAGTCTATTCAC
GATAAGTGTGCACTCTTTTTTCATTTACCTATAATTTTTGAAGGAATTCT
TTAATCCTTATAAATTTGGTATCATCGGAATGATATTAGTGAGTGGAATA
ATTTGAAATAAAAAAATATTTAAAAAAATTCTAAAAATGAAGATGAGAAT
GAAGAAGAAAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGCAGTTTTTTGCTGTTTTTTGGGGTCAATCACTTAT
TAACTTTGTATCATAACTTTATATTGAATAAATATTTTAATGAAATTTTT
TCACAGTGATGATTCCCTAAGATCAAAAAATCTCTCCAGTGAAAATGAAA
GTTAAAGCACTTTTCTACAAGATCTTCATTTTTTCTTCTTCATTTTCATC
TTCATTTTTAGAATTTTTTTGAAGATTTTTTATTTTAAATTGTTCCACTC
ACTAATATCTTTCCGATAATACCAAATTTATAAAGATTGAAGAATTCCTT
CAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGAC
TTTAGTCCACTTGTGGATGTCATTAGCCTGCCCAGTGCTGTGAGACGTGG
TTGTAAAAAAAAAAGGATCGAAGTTATGAATAAGGTAGGTACATCCACTT
ACCATCAAGCTTACGCAATGATCGTGCCAAACGCGCATTATGTCCATAGA
TTTGCGATCCATCAACAAATGCTGTTATAGTGTTCACTTGTTGTCTTTGT
CTTCTTCTGCTTGGAGATGCTGATTGGCATGCAGCAAATGCACGGACGAA
AGGCGTACATTTTGATGTTCCATCGTCAAACTTGATTGGGAAGCATGGAT
ACTTGAAGGCGGAATTTGAGCTACAGCTAAAATTTGAAAAATAAAAATAA
TATACTACACATAAACAACTACAGCTAAGATTTGAAAGGGAAAAATGTAA
CTGCCAAACAATTAGAAAACTTTTTCTGCGACAAAGACGGTAAGGTTCTA
TTTGAGTAAATCCTGACCAGCTAAGGACAATGGTGAATCAGCACTTTTAC
CGTTCTCGATTTTGTGGGTTAAAACTTCCTCAAAAGTGCAAATACCAATC
TGTTCCTCTAAAGAATCCTGCATTGTAACACGCAAGTGTAATTTGTCGTT
CTTTTTAAACCACATGTAGTTATTTCCCCTGATAAACGAAGGGGAATGAA
TCGATAGGCGTGGTACAGTCACTTTCGATCGGGGTTGTAGACGGCGAAAT
ATGTCGTTTTTTATGAAATTTGTCGCTCGTTTTGCCTGTTTTTAGTAATG
CAGGATTCTTTAGATAAACCCCCTCTACATAAAATCGCTAATAAAAGACA
CACTGTCGGCAAAAGTTTTTTTCGAAGAGCTTAGGGAAAAGTAGTAAATT
CTACCATATAAAATAAGCCTTGTGATTTATTGACTTTCATATGTTGTCTG
CTGATAAACAGATTCTTGATAATGTTATTAAGCGCAGTTGTTCTTGTTGA
GATATGCTTTTCTTCACTTCTTAATTTTAAGACATTTCAAATATTTGTCT
AATTAGCTTACTCTTTGATATTACATTTGCCATGGTTTGATACCGTCATG
TCATGATCCAAGAATTGTCCAGCAGTTGTAAACAATGTAGACAATTTTCC
AGCATTTCCTGCATTCACGAATTGAGGTGTGAAGGCAGCTATTGAAACTT
TGTTTGCAGCTGGGATGTTTGAAGGTTTTGTTCCAGGGAATCCTCGTGGC
GTATCTACTTTTCGACGGTCAACATAATCTGCCCCTGAAATTAAAACAAG
GATAATTAGAAAAACATTGAGAAGTGACTTTTACTTAGCTAAGCTTTTTT
GTTTAAAACCTTAAACGCTAAAATCCTGGGTGAAATAAATACGGAAACTC
AAACCCCACTCCTTAATTTGTTTCTTATAACACTTATGGTACGAACGTGT
TAATCAGTAAAATCAAAAAGGAGTGCAACTAGCTCTTGTTGCGAATTTGG
TAGTTATTAGAATGTTATCAAGTAATCCTCATTTATAAAGAACCCTGTAT
AAGAACTTATTTTCATACTGTCCAGGAAACTTTCACGTTTTTCAGTATTA
TTTCTTTCGGTAAACCTGATCGAAGGCCTCAATTAAACTATGACACGCTG
CAGAAAATATAGATCTTAAAAAGAATGATGATAATCGGAATTTAGTGTTT
TTCCAATGAGGATTAAATATGAGGTTATAACTCACGCAAGAGTCTCCTGA
AAGGCGTGTCGATAGCACCAACAGTTGGGAATCTGAGATTGTTGCAAAGT
CCATCAAATCTGCGATAACTCTTTTGAACGTTCCGATATCTTGCACATGA
ACGAGGTCTTTTGGTTGTCTTGACACAATCAATGTAAGTGTTTCCTGAAA
TGATAAATAAAAAACTGTAATTGAGATTTGATGCAAAACTAATGGTAACT
TAGAATTGTTCAATATTAATAAACTTTTTGCGCTTCAAAGTTCCAATTAT
GAAACCACAATTCTTATCCGTACATCTATTTTTGTTCTAATTTTTGTCAA
CCTTCTAAACTTCTTCTGCTTGAGTGATTTACATAAAATTGAAAAACTGA
AAAAGTTGAAAAAATTTTCACACTCCCTGTCACAGAGCTAGTTGGACCCC
CCTCCCACTAGATGATTTGGCAAAAAAAAAGTCGTGAGACAGGGGTGTAT
TTCGTTATTCAGTTTTTCTACTAAAGATTCTATATAGGTATATACAGAGA
TAAAATTCCATAGTTCGGATATTTCAATTTCAATACCTGCATCGAATGAA
GCAGCCAGTTGTACAAAAACACAAATTAGCAAAAAATTTTCTTTCATCAT
TCTTCAATTTGTTTGCAGCTTCCGAATGATTTTGAAGTGATTATCATTTT
TCCAGATCCAGGTCTATTTATATTCGCGATATGCACCACTGCAATTTCAT
CTGACAATATTTTACAGCCCCAATAGCTGATTGGTTGTAAGTGACGTAAA
AGGAATAAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTGGAAGA
CATTGCATATCATGAATTAATATTTTAAGTTGCATTCATCAGAATTGTAT
AATAACGCCTTAACATTTTGCTAATTGCAGATCAAGTTTGCGTTTCGCAT
TACAAGGAAGTGAAAATAGGTATTTTGATCTTTTATGTATCAGATTATCA
AACGAAAAAATCCCCTTTTTTATTAAATTGGAAAGTAGTTGGACTGAATT
GTGTGCCCTCACAAAAGATCCAAGGAAGTCATTATCATTATTACACCACA
AATATCTATAAGAGAAATGAAAAATGATTAATGTAATGATCTCAGAAAGT
ATTAATAGCCCAGCAAGCACACAACGTTGTTTCAACGTTCATCTAACGTT
ATATGCATGTTGTAAGCGTTATATAAACGTTGAAACAACGTTGTGTGCCA
GCTGGGAGTGGATTTTCCACCTTGAATAACCTAATTATTAAACGATCTAA
TTTGTACTAACTTTTGTTTTATCTGATGCCATTTTAACGAAACTTTCAAT
CGTAACATGTAATATACTGTTGATAATCAGATAATTCAGAGATATAAAAT
TTTAAAAATGAGCAGATGAAAGAATGAAGAAAATTAAAATTCTTTTCTTT
TTGAGGCAAATAAAGTTATTTTTAAGTGCATGAAAATATATTTTTTTTCA
GTGTTTCAGTCATATAATCAAATTATTTTTAAACGTTTCTAGAGGGTTAC
TCGTTTGAGTTGAAATTCCTTTTTTTTTGTTCAAAAAATTTAGTATAATC
AACAGCTGGACCAAAAACAGTGCAAAACAGTTTCACAGTTCATTGCCAAA
AGGGATATTTCAAGGAAAGTTGGTTGTATATGGTAGTTTCACTAAATGCT
CAAATTCATTGGGGAAAATGAATGGGGCTCAGGCAAACCTTTGCTACCAG
CGAATACCCCTTAAAACCTAAAAGAAATAGAGGTCCCCTCCATCTGAAAA
TTTAGGTGGAATTTGAGGCTAAGACTTGTTGTATTGAAAGTAGTTTTGTT
TGTGATCGTTCTTGCAGAGTGATCAATGAAACCAGAGCCAAGTTAAATAT
TTAAAGATAACTTTCATCACGACAGAAAGTAAAAAATTACACTACTCAGA
GTTTTGTGCTACTGCACTTGTCAAATATACAAATAAAACTATTTATAAAT
TCTCTTCATTTAAAAATCTGACAAATGTTAAAAAATTGAGATGTGTGGGA
CTGCTTCAAAGTAAGAGTGTATTGAAAGTATACCGTGTATAATTTCTTCC
ATAGCAGTGATGTTTTGTAGAATCTTTCAATTTTTCAAGAACACCCCTGT
CTCTGTGCCCCAGTGGGTGTTGATTACCCAGTGGGGTGAGAATCAAAAAA
CCTGAAATTCACTGGGGTGAAAAATATTCTTTCAAATATTTAGTGGGGTG
GCGAAAATTTCCTTGACATTCCCTGGGGTGAGAAAGAATTTATTGCATGA
GCTAAATTTTGGTTAGCCTGTGTGTTAGTCTGTAGACCGCTTAATTTTAT
CGTGTTTTAACGATAGAAGGTGTTGGCTAACTTTTGGTTTAGTGCTAGTA
AAAATCTGCTTCTTACATGCTATTAAATATCACTAAAAATATCATCTTGA
TCAGGTGGATCTACTCAATGCCTGGGGGGAGGGGGCTATAGGAGCAGTAC
GTTATATCAAATTTTATGAACTCTTGAACCTAGTAATGTTTAGTCAACAT
GATTTAAGTAGAGGTCTTTCTTTCAGTATCTACGCAAGTGAGAAAGCCTC
TCGAAAATCTTTTAGTCTATAACCTAGCTTTAAAGAAAGAAAGGTACAAA
TACAACTGTGGTTTGCGCTGACAGAAATTTTTGATTTTTAACCCCTCTCG
TTTGGCATTTTCTATGTTTTAAAATGACCATGACAATGACCTTAGAGGTC
GGGTTAAATACAGTTAATATATTGAAGTGGAACATTTGATCGCGAGCGAG
CGAAGCGAGCAGATCTTTTTGGCTTGTTTGGATATTTCACCTGTAAAGAA
GGGGAAGGAGAAAATTCTAGTGGGTGATTTTTTGAAAGAAAAGTTCTACT
GGGGTACGTTAAAATAAGGGCATTTCGAGTGGGGTATGTGTAAACTTTTT
ATCATTTTCAATGTTTTTTTACTACAACCATAGTATAAAAAAGCCGCGGC
TGGAATGAGTACCGCTGAATTTCGGTTGTTCTATCTATGTCGTAAGAATG
AATTTTTTTATGGTCCAGTGACAATTTCCATTGTCAATTTAATTTGACTT
TTAACAAACTCCCTCGTTGGACGTAATTTTGCTCATAAACGCAAACCTCT
TGATAATTCACGCATTCATAAGATCAAAGTAAAAGAAAAGACTTTTGATT
TAAAAGTACTAGAACGTCAGAATGTCAGTGCTTAAGGAACTTGAAGAAAA
TTGAGTGCCTCGAAATGCCTTCCAGATTATTTTGAAAAATTCTTACTGGT
ATTAGTAAATAAATATTCAAGCGGCATTCTGTGAAAATTTCATTCAAAAA
ACAACAGTATTGAGGTGATAGCAAGCATTTAAAGTTTAACATTTGAAAAT
TAGTTCTTTTAATAAAATGTGTGTTATTTGGTCCTAAATTTATAAAAATT
TATTTGAAATTTATAAAAATATACTCCAAATAAGGTGATAAGAGAGTAAA
GTTAGAAAAATTTGAGACTTGGAAAGTAATTGTTCTTCAATTGAATATTA
TGAACACTTTTCAGGTTGAAGATTTTGCTAGCTTCGATTTAGTTCTTATA
AATCACGGAGACACAGATAGAACATACATTAACGACAAAAACAATAGCGT
CATCATTCCAGTCGCGGCTTTCTTATACTATGCTACAACATTCCAGTGGG
GTGAGTCATTTGTCCAGTGGGGCTGAAAAATAAGCCATTTTTGGTAAAAA
TTTCACTGGGGTGGCCAGTTGGGTGGATCCCACTGGGTCACAGAGGCAGG
GGTGTTCAAGGGGAAGTGAAAAAATGCCGTTTTACCTATATTTACCCCTC
TCAAAACCTACAAAATGGTTTTTCTCGAATAACTTTCTGTAAAATAATCC
TTTTGGTCTCAAATTTTGAACATTGATTCACTGCAAAGTTATTAAGCTAG
AATTAGATCATTGGTAACTAAATATTTTGAAAACTTTACGTTAAAATCGA
GCTACACCTTAAAACCTAAAAACTTTGACCCCTTTCTCACAACTTATAGT
AGGGGCCACTATGTCGCGAAAAAGCTTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAACTGATAAAGAAAAAGGTCACAACC
TATATCTGAAAATGAATATATCAGGAGATATTAAGGAAATAAGGCAAAAT
GACGTCATAAAACGATGACGTCATCGAAAAACAAAAATTTGCCAAAATTC
AATAACTTTTGGTTTTTTGGAAAGAGTACCTTCCAGTGAACAAAAATTAT
TATTACGAAAACGTTTGAAAATTCGTTTAAAAAAGTCTATTGGCCAAAAT
TGATATTTTTAAATTTTGCCTGTAATGTGTTTGGGAAACCTCCAACCTTC
GACAGGCAAAAAATGAAATTGTCAATTTTGGCCAATAGACTTTTTTTAAC
GAATTTTCAAACGTTTTCGTAATAATACTTTATGTTCCCTGGAGGGTCTT
TTTTCCAAAAAACCAAAAATTTTCGAATTTTGGCAAATTTTTATTTTTCG
ATGACGTCATCGTTTTATGACGTCATTTTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCTCTCAAATTTTGATCTTCTACATTCAAGGAACAATA
TTCAATCATAAAATCCCTTTGCACAAGCTGCTGCACACGGGAAGACATAG
TGGCCTCTACTATTACTGAAACTGTGAAATTGCAATTCAGGTGATGAACC
TTGATTCAATTGATCAAATACTTGCTAGAAATCCATTCCCAAAACAATAT
TTGTACTTTTCAGGGTTTCATGCCCATAATGCAATTGCGCCTGTTTTTTT
GTCAAAAAACAGCTTTGAAGGGTCAAAACTTTTATTTGTTTCATTTTTGA
CATATAGTACTAATGTTCTCAAAATCTCAGATCAAATTTTTGAGATTTCG
GTATGCAATATAGCAAAACTTAGCCTATAAGAAGGCTATAATACATTTTG
TTATGGGAGAAGGTTAAGTAACTTGATCCAGGTTGGATAACACACAGAAA
ACGATTCTACTGAAATAACGCCTATAAGTTTTACAAAACTGTAACGTGGT
ATAAACAGACCTACTACACGGTTTTTTATAAGCATAACGCTTATAAGCAT
ACCCAGGATGAGATCTGGCCTCAGCTCAAATAAGATCTATGCTTCAAAGA
AAAACGTCTTTGCAAAAAAGAGAAGCCAGCAATCATTTCAAAAAAACCGT
GGGAGTGCCATAAATGTAACTTTCGGATGTGAAACGAAATGAATAACCAA
ACTCCCACTTGTAGTTTTATCACATGCTCTGAACTTTTACGTAGGCGCAC
CGAAAACACATGGTAGAATGATAAAGCCTCTACCAAAAATTCAAAAAAAT
TCCCTTTTATCTATTTATTTAAGGAAACTAATTTTAGACAAAACACTATA
AACTTTGAATCTGCGAAGGAAAATTTAATATGTTTTGATACCCGGGGGTA
CCACGCTTGCTGACTGACGGGAGTGTGCCACTGAAGTTCGAAAAATGGAC
CCTACGTGGGAACCGTTTCTTGAAAATGTTGCTAAAATCTGAGAAAAAAA
AGACTCTGAATGGGGATTGAAATTCCAAAAAGGGATTAAAATCTTCCACT
TTTTTGCCTAATTCTCCCAAAAACGTACGCTACGAGGGAAAGATTTTTGT
ATTTTGGTGTCTTTGCCACCCTACCCGAGGCTCACGGAGGTGAAAAACGT
GACATTTCCATAATTAAACGTTTAGTAATTACTGTTATACATTTGGGGAT
CATGTAAAAGATTTCTTTCTAAAGAAACCCATTTCAATTACACTTAAAGG
TTTCATGGGAATTCGTAAATAGTAAACTGCATACTGACACTGGGGCCGTG
TTCAGACCTAGGTTTAAAGTAGTTATGTCCGCATGCTTCTTTTATATTCC
TTTTGTATTCAACTGCACGCTCCTCATTAGTTAAACCAAAGTTTAAAAAG
GAATCACCCTCTGGTTTAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGAGAACGTGAAATTTATGACTTAGA
GACGCTCGGAACGTCTCTAGCAATTTAGGCAGTTAATGGGCTTTTAATGA
GAATATCATGGATCGAAGTATGGAGAACCCCTTACTCCGCAACAAAAAAA
AAACAATTTGTCGATGTCTTACTCAAACATTAAAAAGGGAATTCCTTTTT
CCTCTCTTATGTAATCTATCTAAATGATGAAATAGCAATTAAGTCGTTGC
ATTTCTTAATTCCCATATCAACTCAGCACTACTTAAGCCTTAAACTTAAA
CTTTCAGGTCTGAACACGACCTGGGTGCTTTTTCACTACGCTAGATAGAT
AAGTGGTTATCATCAACGGTCCTTTTCATAAATTTCTAAGGGTTGTAAAA
AATATACAATGAAGATTCGTGCTTAACATCAGATTTTGATCGCTTCATAT
CAGCATTCCAGATGTAACGTCGAAAATTGGTCATTAAACCTTTTGTTTTC
CAAGAGAGGGGTAGACCTCTCTTGGCTTAATGACCAATTAAGCGAAAAAG
GCAGCATAAATAAATTGGTTGCCATAAAAGTAGCAGAATGTGCAGGGGGA
TTCTTTTGTAAAAAATTGGTCATACGGGAAAAGTGTTTTCTTTCCCGATA
GAGTTGAAGAGCAAACTTTCATCTGTATTGATTTGATACAAAAGGCGAGG
AAACTTGTCACAGAAAATGTTCATTAGAAGGCTGTAATTCTAAATCCCTT
GATATGCGAGATGATGATTTTTAATAAAATTTTCTTCAAATTCAAAGGGT
TGTAAACGCTTTGACAACTCTTTTGGGAGTCAGTAATGCTTTCCTATCAA
TTTTCTTTGTTTCAGCTAATCGATTTTCGCCAGACAGTCTCAGTGAAAAA
CTACCCACAGTCTGCTAGACATTACAATAAGGTAATATTTGCTCTTCATC
TTTGATTCTTTCTACAGTGATTAGATTGACACATGCGTGATTAAATTTCT
ATTATTGGTCTTCAGAGGTTAATATATTCTTTGAAAACATAACCTCTGAT
ACTCAAGGTAGTCTCTGGGTTTTGATATCAGCTGTCCGAAGAACTGATCT
ACTTAGCGTAAAAAATGTACAAAAGTTTTAAAATTCCCATGATCAAACTC
TCATTTAATACACCACGTTATCTACGTAATCTGGGGGGAATTTTTCGGGG
GAGGGGGACTTTTTGCTGGGGGTGAAAGTCGTACCTTTAAAACACAAAAA
TAAGATAACTATAGATTAAAACCAGGCTATTTAGAGTAATTCAGCTTTAG
ATTGCTGAAAATATTTTCTAAAATAAATAAACGGGCGAGGGGTTAGAATA
ACAACGGAGTATTCCGAAACTGTTTTGAAAATTAATAACTGGATGGGGAC
GTTTGATCGGGATCGAGATCTTAGAGTACTCTGGTATGCAAATATACAAT
GAAGTTTCTATAACATGGACACACATGAACAAAGCAGATTTGTTCGAATT
ATAGAGACTAGTTTTTAAGTCCTATAAACCTTGAGAACTTTATAGAATTT
CCAGGCATGGACTTTATTGTAGGTAAGAATGTTTGTGACTTAGATGAGCA
AAGGCTTCCGTTTCTTTATACTTTTCCTCTTCAGTTTTTTTAACCACACT
TAACCACTCCTTTTATCATTTGAAAACAAGGGACAAAAAGCAAACTTTTC
TACATTTTGATAAGAGCATCCATGGGATAGAGGCAATTAATTACTCTGTG
CACCTGAGCCTCAACCTCCCATTAAAGATTATACTCGTGGTACTATATCT
ATAGTATCAGTGATCCCTGTAAATTTACAAATGTATAACATGCAGATCCT
GGGATCTCTCATACAAAAGGAATTAGGAATTCTTCTGTTTTTACAAAATA
TCTGACACGTTGGTCCAAAAGAAACGCTGATGTTGTATCAAACGAAGTTG
GAATTTCGTCCGGTTTTAAGAGGTCGCCCGATTTTTTAACTTAAAGTTCT
TATTTTACGTTATCAGAAAGTAAAACATTACACGATATTTTCATGGCCTT
AATTTTTTTCCAACTAAAACCAAAAAATGTCCGAAAACACTACCTCCTCA
GAGCCTCAGAGGTGCAAAAATACATCAGCAAATTTGAAAAGTCAGCCTTA
TGCAATAAGGTACCAATCTTGGGAGAAAATATTAGGTAAATAAATGAATC
CTAAGTTGGGTCTGTTTTGACACATCAGCGGTACATAAGCAAGGGTTAAA
GACGTCCACAAGAAATTTATAATTTCTCCTGTTTTATTTTACATGTATAT
TAGTTAGTAAGAATTTGATACAAAAATGACCCTACAATACAAAGATTTCC
TCCAAAATAATAGTATTTAAAAATAAGATTTAAAATATTAAGTTCGAAAA
AAAAATTATCAATTTAATGTCAGTTTTAGAAAACACTTAGATCTGGTTGA
GGGATATCGTCACAAGCTGTGCGTTTCTTGGTAGTCTGGATGAAAGCATC
TTTGTTTATCGAGACAATTCCTTTCAAGTTGTTACACAGGATTTTCGCCA
TAGAGGTCTTTTTCAATTCGTTACGTTGTTCTGGTGTAAAAACACCACGG
TTGAGATAGAAATAACGATCACCGTCCCTCAGACGTCTGAATTGGTGTTT
AAATAGACAATGGAAAGTGGGACCTGTTTGGAATCCTGGTACGTGATTTT
CCGAAATCCCAGCCGCGAAAAGATCAATATCTGCTGGCTGGTTATATAGG
GTAGAGAATTTCTGAACAACTCCACTGGGCATGTGTTTGGCAAGCTCGCT
GAAAGATGGGATGGCTGGCAGATTGCAGAACTGTCTCCATTTTCCGTATG
TTGGCAATCCATGATCACGACCTCTTTGGATGTTGAGAGCTGTCAAATCC
ATATGGCCTTCTTCACCAGGCGGGACGAATAACTTTCGGAGCAATCCAAA
AGCAAAAATATCATCGACTGTATTTGATTGGTTTCCAACGAGACCTAACA
TGGTTGGTTCAATTCCTCTCTGATTGATGCTTTGAATATTAAAGAAAGAT
TCTCGAAGACTGATCTTTTCAAATTTCTTATCAAAATTGTTGTCAAGTTG
ACTCCATGCGTTTGGTGCTAAACTGTGACCAAATCTGAAAGCTGCAGCGG
CAAAAGCATTAATGATTCTTGGATCTAGTCCAGAATTATATCCTCCATAA
GATCCAAGATCAACAATTCGCGGTATCCATTCATTGAAAACAACATGTTG
CCATTGAGCGATAACAATCTTTCGAGATTCTTGGTATAGCTTCTCCTCAT
TCCAGTGGTAATTGAATTGTCTTAATTTGGTGGCCACTCTGTTATGCTCT
CGAACCCAAGTTGTGTGCATAGAGTGTAGAGCAATGTTTTCATCAGCTCT
AATATCACCAGCAAGAGAACATCCTTCTAGAAGATCGCATGGGGTAGTGA
ACTGTTTAAGAGGTAGTAAATCTCCACTTCGAGTCTTCAATTTACCAGTA
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053238-exon-scaffold_227-1575043694:369304..369421 | TCONS_00053238-exon-scaffold_227-1575043694:369304..369421 | Clytia hemisphaerica | exon |
| TCONS_00053238-exon-scaffold_227-1575043694:354370..355405 | TCONS_00053238-exon-scaffold_227-1575043694:354370..355405 | Clytia hemisphaerica | exon |
| TCONS_00053238-exon-scaffold_227-1510915933:369304..369421 | TCONS_00053238-exon-scaffold_227-1510915933:369304..369421 | Clytia hemisphaerica | exon |
| TCONS_00053238-exon-scaffold_227-1510915933:354370..355405 | TCONS_00053238-exon-scaffold_227-1510915933:354370..355405 | Clytia hemisphaerica | exon |
| TCONS_00053238-exon-scaffold_227-1491911889:369304..369421 | TCONS_00053238-exon-scaffold_227-1491911889:369304..369421 | Clytia hemisphaerica | exon |
| TCONS_00053238-exon-scaffold_227-1491911889:354370..355405 | TCONS_00053238-exon-scaffold_227-1491911889:354370..355405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:354370..369421 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019791 | Haem_peroxidase_animal |
| IPR010255 | Haem_peroxidase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006979 | response to oxidative stress |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0020037 | heme binding |
| GO:0004601 | peroxidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006979 |
response to oxidative stress |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0004601 |
peroxidase activity |
Blast
BLAST of TCONS_00053238 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 251.906 bits (642), Expect = 9.910e-74 Identity = 143/344 (41.57%), Postives = 205/344 (59.59%), Query Frame = -1
Query: 81 CSLAGDIRADENIALHSMHTTWVREHNRVATKLRQFNYHWNEEKLYQESRKIVIAQWQHVVFNEWIPRIV------DLGSYGGYNSGLDPRIINXXXXXXFRFGHSLAPNAWSQLDNNFDK-KFEKISLRESFFN-IQSINQRGIEPTMLGL--VGNQSNTVDDIFAFGLLRKLFVPPGEEGHMDLTALNIQRGRDHGLPTYGKWRQFCNLPAIPSFSELAKHMPSGVV-QKFSTLYNQPADIDLFAAGISENHVPGFQTGPTFHCLFKHQFRRLRDGDRYFYLNRGVFTPEQRNELKKTSMAKILCNNLKGIVSINKDAF--IQTTKKRTACNNIRGPDLSVF 1073
C LAGD RA+E + L SMHT W REHNR+AT+L + N HW+ + +Y E+RKIV A+ QH+ + W+P+I+ LG Y GY+ G++ I NAFA AAFRFGH+L +LD NF + + L ++FF+ + +N+ GI+P + GL V + + L +LF +DL A+NIQRGRDHG+P Y +R +CNL A +F +L + + + +K LY +IDLF A + E+ VPG + GPT CL QF+RLRDGDR +Y N GVF+P Q ++K+TS+A+ILC+N I + D F + +C+ I DL V+
Sbjct: 970 CFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVW 1312
The following BLAST results are available for this feature:
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