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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053243 ID=TCONS_00053243|Name=TCONS_00053243|organism=Clytia hemisphaerica|type=transcript|length=478bp
AAGGCTTTCTCTAAAAATTAAAACTGTTTTGACACAAATGACCCAACAAT
TTAGAAATGACCAGCTTAAAACTAATACGTCCCATGAAAACTTCATAAAA
GATGCTAGGCCATAAATCAAACACATCTCcaagttttttctcaaaaatat
ttgttttatcTTAGGACTGGTGGCGAAGAAACTCTGAAATTGCCAATCAT
GGTAACACCACCCAACAATGTGCTCAATAATACACAACATGATTTTCGAA
ACGTGGAAAGctTGATGACTCCTGGAAGTGGAGCTGCGAATAACTTGAAC
GGAGCTGCGAATAACTTGAACGGAGCTGCAAATAACTTGAATGGAACCCC
AAACCTAAACGAAACCCCAAACGGAAATGGCCAATTTCTAGATCCCAATG
TTGTAAGGAAAGGGACTCGAGAAATGTCCATTGaagccaaacaaaaaaaa
aaaaaacggaccAGCACGGGAAGGAAAC Run BLAST on NCBI transcript from alignment at scaffold_227:481085..484311- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053243 ID=TCONS_00053243|Name=TCONS_00053243|organism=Clytia hemisphaerica|type=transcript|length=3227bp|location=Sequence derived from alignment at scaffold_227:481085..484311- (Clytia hemisphaerica)
AAGGCTTTCTCTAAAAATTAAAACTGTTTTGACACAAATGACCCAACAAT
TTAGAAATGACCAGCTTAAAACTAATACGTCCCATGAAAACTTCATAAAA
GATGCTAGGCCATAAATCAAACACATCTCCAAGTTTTTTCTCAAAAATAT
TTGTTTTATCTTAGGACTGGTGGCGAAGAAACTCTGAAATTGCCAATCAT
GGTAACACCACCCAACAATGTGCTCAATAATACACAACATGATTTTCGAA
ACGTGGAAAGGTAATTGAATTTGTATAAATTCATAATATTTCTGTACATG
ATGGCTTATTGAGGCTTCTCAGTTTATGACCCAGAGGGAAGGTACACAGA
GATACATCAACTCTATAATTAATTGCACGACAGAGAAGGAATCGAAACCT
GACTCTTCTGTATGGCAATCAAGATTACACCTATGATATACACTCGTGTT
AATTATAACCAATCTATTGCAACTGCAATTTTTTCATTGGTTCACGCTTA
TTCTTTTTTTTTTTGTAGCTTGATGACTCCTGGAAGTGGAGCTGCGAATA
ACTTGAACGGAGCTGCGAATAACTTGAACGGAGCTGCAAATAACTTGAAT
GGAACCCCAAACCTAAACGAAACCCCAAACGGAAATGGCCAATTTCTAGA
TCCCAATGTTGTAAGGTAAGGAATACATAATTTTCTGCTGATAATGACAT
GCTTAAATCTCAGTCTAANTAACTTGAATGGAACCCCAAACCTAAACGAA
ACCCCAAACGGAAATGGCCAATTTCTAGATCCCAATGTTGTAAGGTAAGG
AATACACATTTTTCTGCTGATAATGACATGCTTAAATCTCAGTCTACTAA
AATTTATATTTGGTTAGTTAATTTTAAATTTACAAAAACAAAGATTGACC
AGAGAATACAATGAGAATATTTGTACTTGAATTTCACACTGTCATAGATG
TTCTGAAAATCACAGAAAGGGGGTAAGAGAATTTCTAGTAAGGAAAGGGG
CGTTAACAACTTAACAAAGTTCTTTAAACCTATCCTTCTAAATTTCTAAT
TTTGCAGTCTTGGACTGGTTTAAAATCCTAAAAATTCTTGCTCCCCTCGC
TTGCAATCTATTTTAACCAATTCTCAGAAGAGATACCGTGCACAGACTCA
AAAGCACCTCTTTTCAAGGGTGGATATGCTATCATTTTAGTTTTTGCATA
AGGTCTTGAAAGTGGGGAAAAAATCTTGACCACACCCCAACCTTTAGAGG
TATTCCATCAAATTTTGAAGTGGGGTAGAACCCCCCCCCTAGGGTTGCTC
TAGTCTTGGGAGGGGGTATTGACCCCCTTCTGAACTATGACAGTGTGATA
CGAAAGTACTCGAGAAAAACCTAAAAAAACACTTTGTGATAAGTACTTAT
TAATTTAGTAGTATAGGATGGTCTCTTTTCTTCTGTAATAAGATGTCTAC
CAATCAACCAATTTAATCCAAAACTTTCTTGAAATTCAAGTTAAACAACT
AAGAACAAAACCTTAAAAGAAGTTTTTAAGAGGAGAAAAATATTGCAAAG
TTTAATAAAGTTGCTTCTGACCACTGTCTGTTCTATGCAAATTTCAATTA
GAGCCGCACTTAAATTATGTGAGAAATTTGTAAACAATACATTTTGATAG
TTTGTTTTCAAAATTAAACTGTCCCAAGCTCTATGTGGAATCCAGGTTGA
TACCCTTGGTAAGGTTCACATAGACATTTCTTTAATTGTTTCGTGCCAGG
TCAAACCCTCTCTGTGTGCTTCAAATGCAAGTTTCGATAAAAGCTCGCGC
TTAAACGTGTGAGCTTTTTGTAACCGCTCTTTGTTTTGACAGACGAGTGG
GAAGTTTGCTCTTGAAATAATACTGATAGAGGGTTTTCAAAAATAGAACA
GGGGTTGACGTTAAATTTAAATCCCTTTCCAGGGCTTTTCTGAGAATACC
ACATTTACTGCTAATCATTAATACCTGGTTAAGACCCTATGTGTGTGTGT
TTCATATGCAAATTTTGATAAAAGCTCGCACTTAATTGTGTGAGCTTTTT
GTAACCACTCTTTGTTTTGACAGACGAGTGGGAAGTTTGCTTTTGAAATG
ATACTGACAGGGGGTCTTCAAAAGTAGAACAGGGGTTGACGTTGAATTTA
AATCCCTTTCCAGGGCTTTTTTTGAGAATACCACATTCCACATTTACTGC
TAATTATTTAATGCCTGGTTAAAACCCTATANTTAAATTTAAATCCCTTT
CCAGGGCTTTTTTGAGAATACCACATTTACTGCTAATCATTAATACCTGG
TTAAGACCCTATGTGTGTGTGTTTCATATGCAAATTTCGATAAAAGCTTG
CGCTTAATTGTGTGAGCTTTTTGTAACCACTCTTTGTTTTGACAGACGAG
TGGGAAGTTTGCTCTTGAAATGATACTGACAGGGGGTCTTCAAATATAGA
ACAGGGTTTGACGTTAAGTTTGAATTCCTTTCCAGGGCTTTTTTTGAGAA
TATCATATTTACTGCTAATTATTCAATACCTGGTTAAAGACCCTTTGTGT
GTGTGTTTCATATGCAAATTTCGATAAAAGCTCGCGCTTAATTGTGTGAG
ATTTTTGTAACCACTCTTTGTTTTGACAGACGAGTGGGAAGTTTGCTCTT
GAAATAATACTGACAGGGGGTCTTCAAAAATGGTAAAGGGGTTGTATAAA
ATTTGGGTTCCTTTTTTTGAGGATACCACACTACTAAAAATTCTTTCTAA
ATGTAATTCCAAAAGGAGCCAAAACATTTTCTCCTCTTCAAACTAAGATC
TCATTTACAGCTTTCATTTTTAATACATAAATTTAAAAAAAATTGATTTC
ATTTATTGGTATTGGTAGGACAGTACGAATTAATTTAAATTTATAAAAAA
GCCCTTGCTTAAAATTTTGAATTCTTTTAACCGCTCTTTGATTAAGCAAA
TGTTTTAAAGGAACCCTCCATAATAGTAATTGATGAGGATTTTTACTCTG
AAAATTGTTTTAGACCTAGCGATGAAAATGAGAAAAGTATTTTTTTGGTT
TTACACATCACATTTAAGGAATATTTGGCAAGCTTGCTAACCTTTTAAAG
TAGTTAAAACTATTAAAAAAGTGCATTCTAAGGATTAACATTTTGTAAAA
TCTTAGGAAAGGGACTCGAGAAATGTCCATTGAAGCCAAACAAAAAAAAA
AAAAACGGACCAGCACGGGAAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053243-exon-scaffold_227-1575043694:484052..484311 | TCONS_00053243-exon-scaffold_227-1575043694:484052..484311 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1575043694:483647..483793 | TCONS_00053243-exon-scaffold_227-1575043694:483647..483793 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1575043694:481085..481155 | TCONS_00053243-exon-scaffold_227-1575043694:481085..481155 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1510915933:484052..484311 | TCONS_00053243-exon-scaffold_227-1510915933:484052..484311 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1510915933:483647..483793 | TCONS_00053243-exon-scaffold_227-1510915933:483647..483793 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1510915933:481085..481155 | TCONS_00053243-exon-scaffold_227-1510915933:481085..481155 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1491911889:484052..484311 | TCONS_00053243-exon-scaffold_227-1491911889:484052..484311 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1491911889:483647..483793 | TCONS_00053243-exon-scaffold_227-1491911889:483647..483793 | Clytia hemisphaerica | exon |
| TCONS_00053243-exon-scaffold_227-1491911889:481085..481155 | TCONS_00053243-exon-scaffold_227-1491911889:481085..481155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:481085..484311 - |
Blast
The following BLAST results are available for this feature:
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