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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053503 ID=TCONS_00053503|Name=TCONS_00053503|organism=Clytia hemisphaerica|type=transcript|length=1285bpRun BLAST on NCBI protein sequence of TCONS_00053503-protein >TCONS_00053503-protein ID=TCONS_00053503-protein|Name=TCONS_00053503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MDEVDKIIIHTLRQIGCDISDAVVTIKEFSVELVVQAASKCLFTISEQYNRun BLAST on NCBI transcript from alignment at scaffold_232:69156..126385+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053503 ID=TCONS_00053503|Name=TCONS_00053503|organism=Clytia hemisphaerica|type=transcript|length=57230bp|location=Sequence derived from alignment at scaffold_232:69156..126385+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_232:69156..126385+ >TCONS_00053503 ID=TCONS_00053503|Name=TCONS_00053503|organism=Clytia hemisphaerica|type=CDS|length=11310bp|location=Sequence derived from alignment at scaffold_232:69156..126385+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053503 vs. Swiss-Prot (Human)
Match: CCD22 (Coiled-coil domain-containing protein 22 OS=Homo sapiens GN=CCDC22 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.237e-42 Identity = 99/315 (31.43%), Postives = 158/315 (50.16%), Query Frame = 2
Query: 155 MDEVDKIIIHTLRQIGCDISDAVVTIKEFSVELVVQAASKCLFTISEQYN--IPSALPPSMSAKFRIGSSLAAACQDLGYKGDIGYQTFLYANEHELRKVMMFLIEKLPKESGETIDEPLGKGVLLNRRIAAELKKQLSFPWTPAYCKKRXXXXXXXXXWFLQGTSSFNPVNTCQLQYPIGMSNPKKISKEDKEAFGQMKYICNQPINSRDLYASLAEENSCLV----AKEREWEKEWNQSGIMSRLTEQEYKNQXXXXXXXXXXXXXXYNVENETLSNVASGTKLNDLLDAMSGKNNQKSGKGSRFTHAEKLQF 1081
M+E D+I+IH+LRQ G + V T++ F+ ELVV+A +CL I+ + LP +MSA+FR+ SLA AC DLGY ++GYQ FLY +E +LR +++FL E+LP ++ E D+P G +L R I ++++ QL+ PW P + + + LQG++ P + +L P S + + + QP+ ASL E ++ + ++R +++W SRL QE + + +R + + L L +LL A + KGSRFTH+EK F
Sbjct: 1 MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLAMSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPAGDSAILLRAIGSQIRDQLALPWVPPHLR-------TPKLQHLQGSALQKPFHASRLVVPELSSRGEPREFQASPLLLPVPTQVPQPVGR---VASLLEHHALQLCQQTGRDRPGDEDWVHR--TSRLPPQE--DTRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGSRFTHSEKFTF 301 The following BLAST results are available for this feature:
BLAST of TCONS_00053503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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