TCONS_00053549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053549
Unique NameTCONS_00053549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053549 ID=TCONS_00053549|Name=TCONS_00053549|organism=Clytia hemisphaerica|type=transcript|length=3731bp
GAAATTTCttggaattttcgaattttcacAGGTGCCATTTTTGTCCGTTG
TCACACGCTTCTTAAAGAAATCTTCATGGGCGtattatttatcaattttt
agaGCGTGCGTCCACGAGCTCTTTTCCATCAAACCAGCGTGGTCCCGCAT
TCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGAT
TTTcccaaattcaaaaaattgtaaagactttttaccacaaatttactttg
aaaagtaaaaaataagcttCTACTGCTAATAATACGACAACATGGCTGAC
GAATGGGATGAAGGAACATCCTCAGGAAACACGGGATTTGGTGGTGGAAG
CTCAGGTGGCTTTGGAGGTGGAAGCTCAGGTGGTTTTGGCGGTGACTCAA
ATGATAATGATGACAGCGGTGGTAGTTTCAGAGGTGGAAGAGGTAGAGGT
AGAGGACGTGGCCGAGGAAGAGGAAGGGGAAGAGGCGGATTTGGAGGATC
TGATAACAATGACTCAAATGGTGGTGGCTTCGGAGGAGGTTTTGGTGGAG
AAAGTTCAGGTGGTGGCTTTGGTTCAGGCGGTGGTGGCGGTGGTTTTGGA
GACGATTCTGGTGGAGGTTTCGGTGGGAGCTCTGGTGGTTTTGGAGGTGA
TGACTCAGGTGGCTTTGGTGGAGATTCTGATGGAGATGGTGGCCGCGGGA
GAGGTAGAGGACGTGGTCGTGGAAGAGGCAGAGGACGCGGTCGTGGTGGA
TTTGGAGGTGGTGATGGAGATGCAGCTGGAGGTGGTGGTTTTGGTGGAGG
AGATGACACTGGAGAGGTTGATGAAAATGGTGAACCCATTAGACCTCTTC
ATGAAGTTGATCCAGACAAACCAGCACCAGTTACATATGTACCCCCAGAA
CCATCAGAGGCTGAAGAAGAGATTTTCCAAACAATTGCTCAAGGAATCAA
TTTCGATCAATATGATAATATTCCTGTTGAAATCACTGGCCCTGGAGAGA
TGCCAACTGCTGTCAGAAGTTTTGAAGAGGCTGGTCTTGCACCTGGGGTC
TTAGAGAACATCAAGAAAGCTAAATATACTAAACCAACACCTGTCCAAAA
ATATGCCCTCCCGGCTGTGTTAGCAAAACGTGATCTGATGGCTTGTGCCC
AAACTGGATCAGGAAAAACAgcTGCTTTCCTCTTACCTGTGTTGACTGGC
ATACTTGAACATAGAGATGAGTTCACCAGTCAGTTAAGTGAGGTTCAAGC
ACCTATTGCTTTGGTAATTGCACCAACTCGTGAACTTGCAACACAGATCT
TTAATGAAGCACGAAAATTCTCTCATGGAACCAGCATTCGACCAGTTGTT
GTTTATGGTGGTGTCAGTGTTGCACATCAGTTGCGCCAGGTTGAGGCTGG
TTGTCACCTTTTGATTGGCACACCTGGACGTTTGAAGGATTTTATGGGTC
GTAGAAAAATCACACTTGAAAACCTGAAGTATCTTGTTCTTGATGAAGCA
GACAGAATGCTTGACATGGGTTTCATGCCAGATGTAAAAACGATTGTCTC
AGATTTCAATATGCCTGAAAAAGAAGAACGGCACACCCTCATGTTTAGCG
CAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGTGACTTTCTTAACCAA
TATGTTTTCATAACTATTGGTAAAATTGGTAGTACACATTCTGGTATTGA
GCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGCGTGATAGACTTGTTG
ACATTCTTGGCAATGAAGGAACCAACAGGAATCTTGTTTTTGTGCAAACG
AAACGATTGGCTGATTTCTTAGCAAGTTATTTATGTCAGAATGGATTCCC
AACAACAAGTATCCATGGGGATCGTTACCAACAACAACGTGAGGAAGCTT
TGCGAGAATTCAAGAGAGGTGAGCAAACAGTCCTTATTGCCACCCAAGTT
GCCGCTCGTGGTTTGGACATTGCTGATGTTAAACAAGTTATCAACTATGA
TCTTCCTGATGAAATAGAAGAATATATCCATCGAATCGGTCGTACCGGAC
GGATTGGTAACAAAGGAAAAGCCATTTCCTTTTTTACACGTGGAAAAGAT
GATGGGTTAGCTCGTGCACTTGTCAAAACCTTAGCTGACgCTGAGCAAGA
AGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTGCACTTGGTACAGGCT
ATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGACACTCGTGATGGTGGC
GGTGGCGGACAATTCAACGCCATGGGTAACAATGATGGCTGGGGTGGCGG
TGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCGCTGCTGAAGAAGATG
ATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGCCATATGGATAAGGTT
GTTGTCACTCACGTTTGTTTATGCATTTTGCTTGGCAACAGAATTGGACT
TGGTTGGTTCAGTAACTTGACATCAAATTTGCATTCTATTTTTCTTCAAC
TTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGAGAATTTTAAACAGTG
GTGTACAAAAGGACgttgtttaaaaaatttgttcataTTCAAGAAACAGT
TGGTTTGTTGTTACTATAGAAActaaaaacgaaaacaaaaactTGATGAT
ACTATTCGTGTATTGGACTTTGATTCGATATATTAGAATCGGAAACTTTT
TTACGATTGCATAGGAACCTTGAACTCGAATATCTTTCATACTTTGgtaa
ttcttttgaaaaagagttCTATCAGAGAACCTTCCGTAAAGATAAAATAC
TACGAAAGACATTCGATTTCAGATCTGAtctgttttttatttcagaccTG
TTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGtgatttattttcaaag
atttattttattcttatatAGTCTTTCTTATGCTTATTTAGTAGCCACCT
AggttttattttataattttgcaAACCCTTTTGATATTCTTCATAACGTC
CAGCCCTATCGATTATTTCTTGAATCATTTTACAACGATATCCGATAGTC
TTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcgtcaatagaccttatc
ggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcgag
tgtattacaatagaaatctcttggAATtactcgagggaattctattgtca
tacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaa
ctccgataaggtctattggtgtcaagtattcatgatatacaccattacga
tgtcttccacggacccaacagcagACCCAATATTGACTGGTTTTACATCG
catacaaccaatcagctattgggtcttctgacattgcaatggtgcatatc
atgcaTTTGAATTGTGTTTATTTTCCGGTAAGGATTTTCTTCTATCTATG
CAAGATTGTATAACGGtaatatttaaagaaattataCATTGCTTGCCCTA
GGTTATTAGTTCTTCATAAGAAATAACAATTAATTAAgcatttgaaaaat
catttttttaattccCCTTCCCCTTAAAACTTTTCCCTCCTGCCTAACTg
acctttttcaaaatccaTTCCTAATAAGTGAGATGTTAGAGAAAGTTTGG
ATCTTAAGGTTGGACAACTTTCTGACAGTAACagaaattatatattatat
atatctATCTATGATTATATCAGTTTCTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:463235..473977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053549 ID=TCONS_00053549|Name=TCONS_00053549|organism=Clytia hemisphaerica|type=transcript|length=10743bp|location=Sequence derived from alignment at scaffold_233:463235..473977+ (Clytia hemisphaerica)
GAAATTTCttggaattttcgaattttcacAGGTGCCATTTTTGTCCGTTG
TCACACGCTTCTTAAAGAAATCTTCATGGGCGtattatttatcaattttt
agaGCGTGCGTCCACGAGCTCTTTTCCATCAAACCAGCGTGGTCCCGCAT
TCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGAT
TTTcccaaattcaaaaaattgtaaagactttttaccacaaatttactttg
aaaagtaaaaaataagcttCTACTGCTAATAATACGACAACATGGCTGAC
GAATGGGATGAAGGAACATCCTCAGGAAACACGGTAAGCTCCATAATTTA
TTGCATTGTAGGAAGCTTTTTGTCGATCGAATAAACATGTTTTTATTGTC
AGGTATATAGTTAACAAATTACTTTATGAAACGAAATAACAAGGATCAAA
GAGTCTTTCTTTGGGGCTCTAGTTATTATCTAATAGGGTTGGTGTATTAC
CAGGTATTACACCTTTCCAGTAATCCAGACAGAGTCAATTGAACAAGTTC
AAATGAAAATCGCGATCGAACCAATAGAATGTAATGTGTTTGATTGTATT
TGCACAACCATTTCCGTTTGGTTTGGAAACGTGAACTTCTGATGTTTAAA
TatttcaatacacctttcccgtaattcaaacttctcagaaataGCCCGGG
AAAATGTGAGCTCCACTGTCAGTCAGgaacaagtgcaaattaggatacct
gTTGGCAATCTCTTCTACTCAGGAGAGTTGTATCCTAATTTTGAGATTTA
GGTACATCCTTACTGCTTTGATCCGCGATTGGattttttcatcaagattt
gcaccactgaccaaaatttcaagtaatttgCTTTTGCGTATGCTAGTTAG
CACATTTTGAGCTAGCTAGTGGTTTTGGGCTATAGTTTTGCATTCCGCCA
AACTCAATGAAATTCAGTACACAATCTCATTTGCTTATTATTTACATCTT
GGAAGTGGTAAGATGGGGCGGATGTCTCTGGTTGGTGAAAAATAcaggtt
ttttggtttttagtatcCTAATTAGGATGACGTTTAGGATGTTGATTGCT
ACTTTGGATACTTTTTTGTATCCAATTTAAGATACTCTCCTATGTAGGAG
AGGCCGAAGGTATTctaatttgcacttgttcttgactgactggagtgtat
aaaattgtttggggaGATAAAcgaacgcgtttttgcctgcgaggggttaa
ggatggaaaattttcattctaggtatggggaactcaccaaaatcaattca
aaattgaaaaacatctggttttatgagatgaTGTTGTGATTAATTGGATG
TATAGCATATGCttagtttttctttcatttatatCAACCAGAATTATTAC
GGTTTAAAAACAACCATTCTTTCCAtttattcttgaattagaactacctt
agggaaaacaataagtgttaaattcatcaaattacagctttttatgCTTG
AAGGGGGGACAGAAATTTTTGGAGGCAGGGTGGGGAAAAATGAgggggga
tggaaaatttttattctaggcatggggggaaGAGACTCTGAAGGACACTA
TGAATCAATAATGATCGGTAATAATTGAAGGTGATCAGTGACCacttatc
gattctatcggtgatcgaatactcagacgatctcaatcaaacggaattga
ctgattgaaattcgattgtcgaatgcaatcaaatctcaatcgaacgtcaa
aattctgggtaatatttgattgttgttcgactggttcgattgtcgattcc
gttcgattgagatcgtctggtatCAGCTTAGTGATCTGGTGATGGTGGCT
CAAAATTTGATTACCCGTAATGCTTTTGTTCTTTTGAATTTGCCGGAAAG
CATCGTGAGCACTGATCACTAACCACTTCAAAAAGAATATGATGTCTGTA
CCCGGAATCAAACGCAATCAATGTCAagcgaatctgaaaattgcggtaat
attcgattgagattcaacTGCGTTTGACAATTGACTTTTAATTGGTCAat
tgcgtttgatttggtttgactggtgcAATCATCGATTCTgtttgattgag
attgtctgggaATCTCACTCAACTCCAAATCATGGCATtttctttgacca
tttttgatttgtttaattGTTTCGATTACTATTATTACAATTATTATTAC
AATCACTTTCAATCATATTAATTACCTTCGATTGTGTCGGATATGTTTCC
TGTAGTAAAGCAAAGGAATCTAAAACCGAGTTTATCTCGTCCAATAAAAA
CGCAGGATTTACGCGCGAAAACCACTTTCGCTCAGAATGCTTGTTATGGG
TTATTTGAGGAAACCCAGGCGAGCACACTCAAAATCGCAGGGAAGTACTA
AAGATGATTCTTATGGCTTCTTTTTGTggttcaatatttttggttttttc
aaGGTATCTATTTAATCAACTGGTTATCGAAGAAGTCAATGGTTATCGAG
GAAGTTATTGAAAGTAATTAATTACAAACAAAGTACTCAAACAGTTATCA
TGTCTTCGAAGACTAAATTAGTTcaactatgttctgtgaaaaaatcataa
ccatcagtgaaATACTCTTTCATCTATTTAATCTTACCATCTTgtttagg
ggtcactcacatattgaTTCTTCCTACAACAAAAGTCAAATTGAGGCAAA
GGGGTGGGGGGTTAGAGTCGGTGACactaagaaatttcaccagacGTGTC
GTTTATTCCCTGACAATGTTACTTTCCAGGCAATGTCAACCAAATTGAAC
AGTCATTGAACCAAGAAAATCCGGTAAAGTTCTTGATGTTCAATGTGTTC
AAATTACTGCAAACCTATAGTTGGAAAGGGTTGGATATTAATTATGTCTG
TTATATTTACGCACAgagcgagcggagtgcgactcttttgacAAACacat
gcgcgtaagcaaaattgACAATAATATGCAGGCccaaaaaatgaaagttt
ttttttcacaatttttttcgtCTAGCTGCTATTCCACTATGTTTACCCTC
TAGCatgtttcaaatttgaaaatttcgtgaaaattagcattttttagAAG
AAGTagttgcagtgtcaatcttttgcaaatttaaaaacccacttttcctt
ggaaaaaattgatgttttttgtcGAGAATGCAATGTTGGAGGAGGCTTTA
GGAcgacttaaaataaaaattggttaacatttgggtaagcggtgtgagaa
aatcaaaacaaaacagctgAAAAGAACTGAAATTTCAGAATTAACAAaag
gaaaatgcaaaaaatatgtTCTGATGAGCTCTTACTATTCTCCCAAAAAG
TTAGTGAAATTAAATCTGaaatataaaagaaattattacaaaactactcA
ACACACGAGCCAAATATATTCAGCTTTCGGCACTTTCGTTCGTGAAACCA
AACAGTTCTTTTTATCAATGAATGCatgcataaaaacttgaaattcttta
atacttgtgaaaaatattttccataatAAAACAAGGAAAATTCAATGTCT
TTCATTAAACCAGCAAACAAGGGATTTTTGTGTCTCTCCCAATTCTCCTT
AAAActgtgtctttgacttttcagcatcaTTTCTTTGACAATCAACGCTT
CTTACTTCGAAAATTTGACACGTTTACTACATGGCTCtgaatggggttct
aggtccccccacttttcagtaaggttcaggtcccagtttAAATCTAAAGG
TTCGGGTCCCTGCAAAAAGTACTttcaaggttcaggtcccagaaaagaaa
aatcattcggcaccaaattatttcaatttcaatatgttatatatttttta
atatttcttaaaagaaatctaaagaaaaatgatatatatttttaaaaaca
tataagAAGGTTCTGATTGAGAAAAAATATGCACCCTTTAGTTCTTAATT
GCCCTCTGAAATGTGCTGAGAGGCCTAACTTTTTCAATAATAGAAGGTTA
TTGTGATCAAATCGCcatcaaatcaaaattaaaacattttaaagtgCTTC
GCTCGCAACAATAGATGTCAACAaagcaaaacattcgaatcgctTCACAA
CaatggaatgtcttctttttgTGGTGTGTGTACCACCCCCTCTTGCATgc
agataaaaataaaacaatagaatatttaaaaacagaacgttaaaaccaaa
caaaaaaatatttttacaatttcttaattATTGTAAATAGCCTCCAGAAC
TTAAGTGCAGCCCTtcaggtccccccacttttttagcccccccccctgag
tttaaaaaatgagacagctcCCACCCACTTTTAGACCGATTTTAGATTTA
CACCCCCCCCCAAATTAAATAAGGGGGGGGGCGGAGCCATATTTACAGCT
TGACATTAGTTGAGAGTCGAGAAGTTCATCAATTAGTTGGAACAACGAAT
CTAACGAAATTTTGGAACAAAAACTAGCTAACTTAAAGATTCCGGGCCTC
ATctaaaaagacccactagatcaaaagttaaggggtggtacaggaaaagc
cctcCCCCCTAGTTTTAAACCGCCCCTAAAaacctagtatgaatagggtt
aagtgaATACAACTGTTCCTTTGCTTAAAaattattctttaaaagtagaA
ATTGCAttgtatatttataaaaacGCATTGTGAAAGCTAAATAATTTTGA
GGCCTTGGTGGGCTTATTTAGCTTTTCTTCTTTCTCCAAAAAGTCGAgct
catttgaaaatttgatcctTGTGTTAAAAGTTAAAAGTGTATTGTTTAGG
ATGtacatttcagaaattactgttAAAAGAATTAgttgtcttttttttaa
attggagAAAAACTCTAAAATTGGGTTAGTACAGAataaaatatttggaa
acattatGCACATAGACCACCCCCTCACGGTGTGAACCCCCCTTTTTgaa
cctaccccggtggggtggaggtcctataaattaacccgtgttcgttcgtt
agttagttagttaccagcttttctcgagattgactcattagttttttctg
atttttggcgaccataaaccctcgaatgtgacggagcccaattttcgggg
aaaaaattttgggcaaatttgggccaaaaaacagcttaaaaacaagtttt
ttggactttgtgaaaaattagatcattaattttttctgatttttaacatg
aaagtagggtacagtcatagttaaaagatggctcaaccagatttttgcaa
aaatttttttggctcaaaaattgcatttttatctataagaaccactttta
ataagaatacatcaatgttcttagccatattattattattattattttat
tagttttttttaaagatgaaaatgtcacggtggagcgcgatggtttgagt
tttctgtaaacacttattatttttttggctgaaaaatgaatctttatcta
taagaatcactatttatgagcatagatcaatgttattagaaaagaaaaat
gtcacggtagagcgcgacggtttgagttttctggaaaccttatttattaa
gctgtgcatttttctgatagtggttttCATAAAGAAAAGcacttaatagc
ttttttatttctttttcaaaaatatttttcaatagtgttgatagtttctt
atgtgtttcattgtttcaatgttcactgattagtttgataaccaagtagg
tccataaaagtatcgcttgttaaTAGGGGATTAGAGTGCTTTATAGGGGG
TAGGAGATTTTCCAAATCAAatgggggatcaaataaaaatagtAAATTTG
TGAACAAAGATTTGCAAATATGGTTTTTTTTCAGGGTTTAAGTAGTGACC
AATAGTTTTTACCCATAAAAATGGGGGGGGATCAGACGACTGCACACTAT
GGCccctttttttttcaggaaaaacttCTCTGCTCTCAGGATCATTTTCC
TCAAATGTGCTAATTATTTCATAACTCTCTTATCAGCCAAAACTCCACCT
AAGGATTTAAAATCTGgagttttttttctcaaacatcagttgtttgtttg
ttttttcagaaaaatatatcaTTTCATATTTATTCTCTTTTCAGGGATTT
GGTGGTGGAAGCTCAGGTGGCTNgtttgtttgttttttcagaaaatatat
cattTCATATTTATTCTCTTTTCAGGGATTTGGTGGTGGAAGCTCAGGTG
GCTTTGGAGGTGGAAGCTCAGGTGGTTTTGGCGGTGACTCAAATGATAAT
GATGACAGCGGTGGTAGTTTCAGAGGTGGAAGAGGTAGAGGTAGAGGACG
TGGCCGAGGAAGAGGAAGGGGAAGAGGCGGATTTGGAGGATCTGATAACA
ATGACTCAAATGGTGGTGGCTTCGGAGGAGGTTTTGGTGGAGAAAGTTCA
GGTGGTGGCTTTGGTTCAGGCGGTGGTGGCGGTGGTTTTGGAGACGATTC
TGGTGGAGGTTTCGGTGGGAGCTCTGGTGGTTTTGGAGGTGATGACTCAG
GTGGCTTTGGTGGAGATTCTGATGGAGATGGTGGCCGCGGGAGAGGTAGA
GGACGTGGTCGTGGAAGAGGCAGAGGACGCGGTCGTGGTGGATTTGGAGG
TGGTGATGGAGATGCAGCTGGAGGTGGTGGTTTTGGTGGAGGAGATGACA
CTGGAGAGGTTGATGAAAATGGTGAACCCATTAGACCTCTTCATGAAGTT
GATCCAGACAAACCAGCACCAGTTACATATGTACCCCCAGAACCATCAGA
GGCTGAAGAAGAGATTTTCCAAACAATTGCTCAAGGAATCAATTTCGATC
AATATGATAATATTCCTGTTGAAATCACTGGCCCTGGAGAGATGCCAACT
GCTGTCAGAAGTTTTGAAGAGGCTGGTCTTGCACCTGGGGTCTTAGAGAA
CATCAAGAAAGCTAAATATACTAAACCAACACCTGTCCAAAAATATGCCC
TCCCGGCTGTGTTAGCAAAACGTGATCTGATGGCTTGTGCCCAAACTGGA
TCAGGAAAAACAGTAAGTGTGtttaaatgttttgataaaGGTTATAATTA
AAAAAGTAATCATCTCTTTCTCGAATTCTTATTTAGGTTTCAACCAGGAa
gaataatttttattatttatatttCCTCAGTTGAATCaagagatttgttt
ttctttaggcTGCTTTCCTCTTACCTGTGTTGACTGGCATACTTGAACAT
AGAGATGAGTTCACCAGTCAGTTAAGTGAGGTTCAAGCACCTATTGCTTT
GGTAATTGCACCAACTCGTGAACTTGCAACACAGATCTTTAATGAAGCAC
GAAAATTCTCTCATGGAACCAGCATTCGACCAGTTGTTGTTTATGGTGGT
GTCAGTGTTGCACATCAGTTGCGCCAGGTTGAGGCTGGTTGTCACCTTTT
GATTGGCACACCTGGACGTTTGAAGGATTTTATGGGTCGTAGAAAAGTAA
GATTTTTTACTACTCTCggatacctaatagccgggggtgctaatttaacg
attaatcacactcctctaaaccaatcagattcgaatAATTTTGCGCGGCT
GACGATTACTTTAAGAAACTGCATGCTTTTGCAAGCTTCTTTTTTATAGC
GATTTAGATCTCACTTTTTATACTTATGACATTAACAATGTTTTCCATTT
TCAATATATCaacaaataaataatataaatacCAGTAAATactcattttt
gaaaactttcttgTATTTTAGATCACACTTGAAAACCTGAAGTATCTTGT
TCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCAGATGTAA
AAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACGGCACACC
CTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGTGA
CTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGTAGTACAC
ATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGCGT
GATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGAATCTTGT
TTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTATTTATGTC
AGAATGGATTCCCAACAACAAGTATCCATGGGTTAGTATTTGTTAATCCT
CTTCTCACTGCAATTTACTATCTTCATTCTTAACTTTCAAAGCAGAAATG
TGAGACAGTTCCTCATttgttttaaaatctttaaaatcgaTCAATATTTT
CTGTAAGATTTCGTCTTTTATGTACAGTCTACTCTCCctaattcaaattt
tctttaatttgaattaagacattgccccccccccctcagctTGAAAATGC
ATAAAATGTCCTCTATAATTTGAATGTTTCTCTAAACGTTTAGTCCCTCT
AAGGTCGAATTCAAGAGAGGAAGCATCTAATACTTACCTTGAAATTCCAG
GGATCGTTACCAACAACAACGTGAGGAAGCTTTGCGAGAATTCAAGAGAG
GTGAGCAAACAGTCCTTATTGCCACCCAAGTTGCCGCTCGTGGTTTGGAC
ATTGCTGATGTTAAACAAGTTATCAACTATGATCTTCCTGATGAAATAGA
AGAATATATCCATCGAATCGGTCGTACCGGACGGATTGGTAACAAAGGAA
AAGCCATTTCCTTTTTTACACGTGGAAAAGATGATGGGTTAGCTCGTGCA
CTTGTCAAAACCTTAGCTGACGTAAGTATTTGTTATTCTTTGTTAAGAGC
TTATCTAATATTTTTTGGCGTGAAAGAGATTTTGTCATTTAGACAAATGT
GTTGTCACTACTTGACTTATAAATTGACCAGTAGTTTTCTAGCCGCATTT
GAATCATTTCATGTCAGGAATTTCCATTCAAttgacttgatttttttttg
taggCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTGC
ACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGACA
CTCGTGATGTAAGTAGTAGTTTTAGTCAGAGGCACAGAAGTACGCTGTCA
CCTAGAATTCAAGATTTGATCATTTTCCATAAAGCATAGCTAGAATAGTC
TATCacatgtaaaaataatttctgTTGCTAATGAAACGGTTTTAAGGGAG
GGTTGAAAGAGAAATTTTCCTTACGAGAAAACAATAACTTGAATATTTCT
TTCTAAAGAAAGTTGAAGGAACCAGCATTTAGAATCATATACCATCCTTT
TTTCAGGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACAATGATGG
CTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCGCTG
CTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGCCAT
ATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGCTTGGCAA
CAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTGCATTCTA
TTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGAGAA
TTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttgttcataT
TCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacgaaaacaa
aaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATATATTAGAA
TCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAATATCTTTC
ATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACCTTCCGTA
AAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtctgtttttt
atttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGtgat
ttattttcaaagatttattttattcttatatAGTCTTTCTTATGCTTATT
TAGTAGCCACCTAggttttattttataattttgcaAACCCTTTTGATATT
CTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTTACAACGA
TATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcgtca
atagaccttatcggagtttttgatttttctaaaaaagcgatgcattgtgg
gattgtttcgagtgtattacaatagaaatctcttggAATtactcgaggga
attctattgtcatacactcgaaacaatcccacaatgcatcgcttttttag
aaaaatcaaaaactccgataaggtctattggtgtcaagtattcatgatat
acaccattacgatgtcttccacggacccaacagcagACCCAATATTGACT
GGTTTTACATCGcatacaaccaatcagctattgggtcttctgacattgca
atggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAAGGATTTT
CTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaattataCA
TTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATTAATTAAg
catttgaaaaatcatttttttaattccCCTTCCCCTTAAAACTTTTCCCT
CCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGAGATGTTA
GAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAACagaaat
tatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033801XLOC_033801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053549-exon-scaffold_233-1491911889:463235..463567TCONS_00053549-exon-scaffold_233-1491911889:463235..463567Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:463235..463567TCONS_00053549-exon-scaffold_233-1510915933:463235..463567Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:463235..463567TCONS_00053549-exon-scaffold_233-1575043694:463235..463567Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:469329..469350TCONS_00053549-exon-scaffold_233-1491911889:469329..469350Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:469329..469350TCONS_00053549-exon-scaffold_233-1510915933:469329..469350Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:469329..469350TCONS_00053549-exon-scaffold_233-1575043694:469329..469350Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:469432..470246TCONS_00053549-exon-scaffold_233-1491911889:469432..470246Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:469432..470246TCONS_00053549-exon-scaffold_233-1510915933:469432..470246Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:469432..470246TCONS_00053549-exon-scaffold_233-1575043694:469432..470246Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:470393..470680TCONS_00053549-exon-scaffold_233-1491911889:470393..470680Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:470393..470680TCONS_00053549-exon-scaffold_233-1510915933:470393..470680Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:470393..470680TCONS_00053549-exon-scaffold_233-1575043694:470393..470680Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:470956..471365TCONS_00053549-exon-scaffold_233-1491911889:470956..471365Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:470956..471365TCONS_00053549-exon-scaffold_233-1510915933:470956..471365Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:470956..471365TCONS_00053549-exon-scaffold_233-1575043694:470956..471365Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:471685..471955TCONS_00053549-exon-scaffold_233-1491911889:471685..471955Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:471685..471955TCONS_00053549-exon-scaffold_233-1510915933:471685..471955Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:471685..471955TCONS_00053549-exon-scaffold_233-1575043694:471685..471955Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:472138..472242TCONS_00053549-exon-scaffold_233-1491911889:472138..472242Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:472138..472242TCONS_00053549-exon-scaffold_233-1510915933:472138..472242Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:472138..472242TCONS_00053549-exon-scaffold_233-1575043694:472138..472242Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1491911889:472491..473977TCONS_00053549-exon-scaffold_233-1491911889:472491..473977Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1510915933:472491..473977TCONS_00053549-exon-scaffold_233-1510915933:472491..473977Clytia hemisphaericaexon
TCONS_00053549-exon-scaffold_233-1575043694:472491..473977TCONS_00053549-exon-scaffold_233-1575043694:472491..473977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:463235..473977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.54391e-10	0	0	0	0	1.37498e-10	4.32296e-08	0	9.25922e-10
Blast
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BLAST of TCONS_00053549 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 500.745 bits (1288), Expect = 2.131e-160
Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 1 
Query:  880 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 2241
            VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR
Sbjct:  244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698
The following BLAST results are available for this feature:
BLAST of TCONS_00053549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX42.131e-16055.36Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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