TCONS_00053567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053567
Unique NameTCONS_00053567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053567 ID=TCONS_00053567|Name=TCONS_00053567|organism=Clytia hemisphaerica|type=transcript|length=3159bp
TTTGACAATAGCTATAATGGCAAAAGGCAATCAAATTGTTGAGTTGATTA
ACAGGAATAATTGCATGTCTGTATGAAAATGAGCAAAATGAACTAATTGG
AATGAATCATATTTGTCATACCACTTGAGAAGAGATAGAGGTGGTGGAAT
ATAGATGGTCATATTTTACTGAGAAGAGTAAAGTTTAGACTGAGTCGTAC
GATTTATGATACGAAGATGTCGATCCGAAGTATAGGAGGCAATTTACTTG
GTAGCCGACGCAAGGAAAATCACTATAATGTCACTCTAGATGATCAAAAC
AATCGAGCTAACGGGCGTGACCATTTATCACAGTTTGAGAGAGGCAGTAT
GCTTCCAGTTGGTGCAAGCCGTAAAGACATCACTCGAATAAAGAACAAAG
CTTACACATATTCAGAGAACTTCTCAATCATTGGATTAACTCGAGTCTTT
ACTGGAAACCCTGTTGAACGAGCCTTTTGGTTTTGCGTATTAGTTGTTGC
CATATCAATAGGAGTTTACATGAGTAGTGAACTTATCACCAAATATATCA
AAAAGGACGTGAGAGTGGACAAGCAGACTATAATCACTGATAGTAACCAC
TTTCCAACTGTCACCATATGTTTGAAGCCACCTCGCAAAAAGAAATATTG
CAATCTAGCCATCGTTAGCAACCCTGGTCAAGATAGTAATATGCAAGAAC
CATGCCCAGATGAGTATGATTCGACAGAAAGGAATGAAACATTGCGATCA
ACTGTAGAAAAGAATCATATTACAATCGGTGACTTTAAGATCTCATGCCA
GGAACGTGGTATTTGTGAAAGTTTCTCTGATCTGATTAATACGTATTTCA
AAGTGGAAACCAGTTTCGAGAATTGTTTGATTTGGAATTATGATGGAACA
TTTTTTAATGACGAGAACCGGTTCGATATTGATATTTCTATTCTGAACAC
GAAAAAAGAAGTCTTTGACCATCAGAAAGATGACATTCGAATCTACGTAA
GTCCAAAAAGTGTTTACCTCCCTCTACAACACAACTATCTCACAACCNAA
AAGGGATGGACTATAGAGGAGATCTTAGAAAACATTCTCgattgattttt
gtgatttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTTTCCCCTG
TCCACGTGACTCTAAAATTGTTGTTATATTTATCATTCAATTATAGAAAA
TTATCAATCTAAACTGTGCCTATTTataaaaatacttcaatattattata
ttaACTTTTACAAACTAAAACTAGATATATTGTATAATGAGATAAAAGGG
CAAAACTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGAATACGCGT
ATAATAATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCCATGGATT
GNTCAAAGAGGTGCATaattgctttgaaaaaatgtggagATACTTATGAC
TTTTGCAAAGACTTTTTACCCTTTGACTTGGTTGATGAATACCACGACCC
TGAAAAAAGTATTCTCGAAATTCATCGATGTTTAGATCAAAGTTATTACC
AAGAGCGAAAGGTGACAGATTGCGAGCTTCCATGCAAGGAAACTTCCTTT
GATATTTATGGATCAAGTTATCACTTCAAAGAAGACATTAACAAAACGAA
CTTTAAGTTGAGCATGAAATTCGAGAGCCCTTACGTCTACAACCTAGAGC
AGGAAGAAGTGTTGTATAGTTGGGGAGATTTCCTTGGAGGTTTAGGGGGA
AACATTGGTCTATTTTGTGGGTTCTCTTTACTTTTTCTGATTGAGATAGC
TGCTTTTGTTGTATTGAGATGTTGGGCTAAAGTTGCCAAGAAACATTTGG
TGCGAAGAGAACGTATAATTAAACGACAAAGTCGAAGTGAGTTTCCAAAT
GATGATGTGGAGTTAAANTCCCATATTCATCAAAATTCCATCGAACTTca
cgaaagaaaaaaataacgaaagagTAGAAGCTAAAACTAAAAACagttaa
aacattaaaaactaagaatattttaaagtaAGTATAAAActtcaaataca
aaataatttAGAAAGTTATTCAAAAATCCATCCACATTAAGTATATTCGT
TAATTGGCAAAATGAATAAATTTAAGTATTGTAATTCNGCCAAGAAACAT
TTGGTGCGAAGAGAACGTATAATTAAACGACAAAGTCGAAGTGAGTTTCC
AAATGATGATGTGGAGTTAAAAGAAGTAGCAATGGGTGAGAGTGAAGAAT
TTGCTGATGACCAACATTCTAGTGATGTCAGTGATGAAGAGACGGATCCA
ACGCTTCAATATGATAAAAATCATGATGAAATTACGGGCGAAAGACTTTA
TTACTCACAGACATTGATATAGAAGAAGTATCATTTATTGCGGCAATTCA
GAATATCCTGATAGGTTGGGGTCCGGAAGAGGGGTGCgaataatattttt
ttccaatgaaaaaaaaaaacagaaagaagTAAGAATTAAAAGTAGAAGAA
TAATCTACTCGAAAAAAAGAAAGGACAAACGGATGATTATGGTTGAGGAA
AAGTAGGAAACTTACTcggggaaaaaagaaaaatttcttaggaaagttTT
CCTATAAGCAAAGTATTACCTGACTATTAAGTTTTCTCCTTTAAGTTTTG
AAACAAATAACGGATGGAATTTTTTTACTCtacatattttaaacaaaacc
aATGTAaatagaatttaatggaaaacaAGAGAAAATGTTTAATGCAACGA
AACAACACTGCTACAAATTCGACTCGATTATCTGTATCTAACACATAAAA
GGGATGGACTATAGAGGAGATCTTAGAAAACATTCTCgattgatttttgt
gatttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTTTCCCCTGTC
CACGTGACTCTAAAATTGTTGTTATATTTATCATTCAATTATAGAAAATT
ATCAATCTAAACTGTGCCTATTTataaaaatacttcaatattattatatt
aACTTTTACAAACTAAAACTAGATATATTGTATAATGAGATAAAAGGGCA
AAACTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGAATACGCGTAT
AATAATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCCATGGATTGA
ACTCAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_233:626770..630136+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053567 ID=TCONS_00053567|Name=TCONS_00053567|organism=Clytia hemisphaerica|type=transcript|length=3367bp|location=Sequence derived from alignment at scaffold_233:626770..630136+ (Clytia hemisphaerica)
TTTGACAATAGCTATAATGGCAAAAGGCAATCAAATTGTTGAGTTGATTA
ACAGGAATAATTGCATGTCTGTATGAAAATGAGCAAAATGAACTAATTGG
AATGAATCATATTTGTCATACCACTTGAGAAGAGATAGAGGTGGTGGAAT
ATAGATGGTCATATTTTACTGAGAAGAGTAAAGTTTAGACTGAGTCGTAC
GATTTATGATACGAAGATGTCGATCCGAAGTATAGGAGGCAATTTACTTG
GTAGCCGACGCAAGGAAAATCACTATAATGTCACTCTAGATGATCAAAAC
AATCGAGCTAACGGGCGTGACCATTTATCACAGTTTGAGAGAGGTTAGAT
CATTCTCACTATTGAGAAATACATTATTTCTTTCATTCATTCTAATTcta
ataaatattttgactgAAGACCACACCTTTCAGTAGCAATTCAATATTTC
AGTTTCAAATTCGGTACATTTCACAACTATTNTTCAGTAGCAATTCAATA
TTTCAGTTGCAAATTCGGTACATTTCACAACTATTTAATCTTTTATTCCA
GGCAGTATGCTTCCAGTTGGTGCAAGCCGTAAAGACATCACTCGAATAAA
GAACAAAGCTTACACATATTCAGAGAACTTCTCAATCATTGGATTAACTC
GAGTCTTTACTGGAAACCCTGTTGAACGAGCCTTTTGGTTTTGCGTATTA
GTTGTTGCCATATCAATAGGAGTTTACATGAGTAGTGAACTTATCACCAA
ATATATCAAAAAGGACGTGAGAGTGGACAAGCAGACTATAATCACTGATA
GTAACCACTTTCCAACTGTCACCATATGTTTGAAGCCACCTCGCAAAAAG
AAATATTGCAATCTAGCCATCGTTAGCAACCCTGGTCAAGATAGTAATAT
GCAAGAACCATGCCCAGATGAGTATGATTCGACAGAAAGGAATGAAACAT
TGCGATCAACTGTAGAAAAGAATCATATTACAATCGGTGACTTTAAGATC
TCATGCCAGGAACGTGGTATTTGTGAAAGTTTCTCTGATCTGATTAATAC
GTATTTCAAAGTGGAAACCAGTTTCGAGAATTGTTTGATTTGGAATTATG
ATGGAACATTTTTTAATGACGAGAACCGGTTCGATATTGATATTTCTATT
CTGAACACGAAAAAAGAAGTCTTTGACCATCAGAAAGATGACATTCGAAT
CTACGTAAGTCCAAAAAGTGTTTACCTCCCTCTACAACACAACTATCTCA
CAACCNAAAAGGGATGGACTATAGAGGAGATCTTAGAAAACATTCTCgat
tgatttttgtgatttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGT
TTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTTATCATTCAATT
ATAGAAAATTATCAATCTAAACTGTGCCTATTTataaaaatacttcaata
ttattatattaACTTTTACAAACTAAAACTAGATATATTGTATAATGAGA
TAAAAGGGCAAAACTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGA
ATACGCGTATAATAATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTC
CATGGATTGNTCAAAGAGGTGCATaattgctttgaaaaaatgtggagATA
CTTATGACTTTTGCAAAGACTTTTTACCCTTTGACTTGGTTGATGAATAC
CACGACCCTGAAAAAAGTATTCTCGAAATTCATCGATGTTTAGATCAAAG
TTATTACCAAGAGCGAAAGGTGACAGATTGCGAGCTTCCATGCAAGGAAA
CTTCCTTTGATATTTATGGATCAAGTTATCACTTCAAAGAAGACATTAAC
AAAACGAACTTTAAGTTGAGCATGAAATTCGAGAGCCCTTACGTCTACAA
CCTAGAGCAGGAAGAAGTGTTGTATAGTTGGGGAGATTTCCTTGGAGGTT
TAGGGGGAAACATTGGTCTATTTTGTGGGTTCTCTTTACTTTTTCTGATT
GAGATAGCTGCTTTTGTTGTATTGAGATGTTGGGCTAAAGTTGCCAAGAA
ACATTTGGTGCGAAGAGAACGTATAATTAAACGACAAAGTCGAAGTGAGT
TTCCAAATGATGATGTGGAGTTAAANTCCCATATTCATCAAAATTCCATC
GAACTTcacgaaagaaaaaaataacgaaagagTAGAAGCTAAAACTAAAA
ACagttaaaacattaaaaactaagaatattttaaagtaAGTATAAAActt
caaatacaaaataatttAGAAAGTTATTCAAAAATCCATCCACATTAAGT
ATATTCGTTAATTGGCAAAATGAATAAATTTAAGTATTGTAATTCNGCCA
AGAAACATTTGGTGCGAAGAGAACGTATAATTAAACGACAAAGTCGAAGT
GAGTTTCCAAATGATGATGTGGAGTTAAAAGAAGTAGCAATGGGTGAGAG
TGAAGAATTTGCTGATGACCAACATTCTAGTGATGTCAGTGATGAAGAGA
CGGATCCAACGCTTCAATATGATAAAAATCATGATGAAATTACGGGCGAA
AGACTTTATTACTCACAGACATTGATATAGAAGAAGTATCATTTATTGCG
GCAATTCAGAATATCCTGATAGGTTGGGGTCCGGAAGAGGGGTGCgaata
atatttttttccaatgaaaaaaaaaaacagaaagaagTAAGAATTAAAAG
TAGAAGAATAATCTACTCGAAAAAAAGAAAGGACAAACGGATGATTATGG
TTGAGGAAAAGTAGGAAACTTACTcggggaaaaaagaaaaatttcttagg
aaagttTTCCTATAAGCAAAGTATTACCTGACTATTAAGTTTTCTCCTTT
AAGTTTTGAAACAAATAACGGATGGAATTTTTTTACTCtacatattttaa
acaaaaccaATGTAaatagaatttaatggaaaacaAGAGAAAATGTTTAA
TGCAACGAAACAACACTGCTACAAATTCGACTCGATTATCTGTATCTAAC
ACATAAAAGGGATGGACTATAGAGGAGATCTTAGAAAACATTCTCgattg
atttttgtgatttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTTT
CCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTTATCATTCAATTAT
AGAAAATTATCAATCTAAACTGTGCCTATTTataaaaatacttcaatatt
attatattaACTTTTACAAACTAAAACTAGATATATTGTATAATGAGATA
AAAGGGCAAAACTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGAAT
ACGCGTATAATAATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCCA
TGGATTGAACTCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033807XLOC_033807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053567-exon-scaffold_233-1491911889:626770..627112TCONS_00053567-exon-scaffold_233-1491911889:626770..627112Clytia hemisphaericaexon
TCONS_00053567-exon-scaffold_233-1510915933:626770..627112TCONS_00053567-exon-scaffold_233-1510915933:626770..627112Clytia hemisphaericaexon
TCONS_00053567-exon-scaffold_233-1575043694:626770..627112TCONS_00053567-exon-scaffold_233-1575043694:626770..627112Clytia hemisphaericaexon
TCONS_00053567-exon-scaffold_233-1491911889:627321..630136TCONS_00053567-exon-scaffold_233-1491911889:627321..630136Clytia hemisphaericaexon
TCONS_00053567-exon-scaffold_233-1510915933:627321..630136TCONS_00053567-exon-scaffold_233-1510915933:627321..630136Clytia hemisphaericaexon
TCONS_00053567-exon-scaffold_233-1575043694:627321..630136TCONS_00053567-exon-scaffold_233-1575043694:627321..630136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:626770..630136 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.4697e-06	0.0567184	0	0	2.77559	2.19006	5.73972e-06	4.28974	1.21462e-09	1.2487	1.80516	0.278976	0.620065	0.965411	0.64155	0.667073	0.274675	0.543336	0.414325	0.593559	0.0413397	0.125763	0.173428	0	0.249496	0	1.38479	0.876544	0.266372	0.178009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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