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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053572 ID=TCONS_00053572|Name=TCONS_00053572|organism=Clytia hemisphaerica|type=transcript|length=2635bpRun BLAST on NCBI protein sequence of TCONS_00053572-protein >TCONS_00053572-protein ID=TCONS_00053572-protein|Name=TCONS_00053572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp MTCNSHLWTVLLLVCCGVGTSDARYIYIHPFWVWIQPEDVSVVSVDTKRDRun BLAST on NCBI transcript from alignment at scaffold_233:728247..737861+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053572 ID=TCONS_00053572|Name=TCONS_00053572|organism=Clytia hemisphaerica|type=transcript|length=9615bp|location=Sequence derived from alignment at scaffold_233:728247..737861+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:728247..737861+ >TCONS_00053572 ID=TCONS_00053572|Name=TCONS_00053572|organism=Clytia hemisphaerica|type=CDS|length=27846bp|location=Sequence derived from alignment at scaffold_233:728247..737861+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053572 vs. Swiss-Prot (Human)
Match: TGM4 (Protein-glutamine gamma-glutamyltransferase 4 OS=Homo sapiens GN=TGM4 PE=1 SV=2) HSP 1 Score: 411.764 bits (1057), Expect = 6.500e-131 Identity = 238/674 (35.31%), Postives = 370/674 (54.90%), Query Frame = 2
Query: 521 EDVSVVSVDTKRDLNGRLHHTDQFKTDAMVVRRGQEFLLDVKLSTTFDPSLHSISLELRTGSRPNTYERTLVKIPMVKYLDKIKWGMRIVGKSDSTLQLKINIPARCLIANYELRIVNNLRKVLYTHKQPVYILFNPWSTEDEVYMPNASHLEEYVLNDQGVLFQGSANHISPLRWYFGQFEKISLESAFALLSTTKIRERDTARD---ISRRIAALVNSNDERGVLQGRWGSDFTGGTEPWAWTGSPAILEEYTKTKQPVKYGQCWNFCGLTTTLLRVVGIPTRAISNFNSAHDTDGNCTYDRFYDQNGEFLSRMSRDSTWNFHCWSDAWMERPDLPPGYGGWQAVDGTPQERSNGRYQTGPAPLRAIKEGNVKLKHDVRFLFAEVNADTVYW--SRLSPDQEFRPIRVDRKLIGQNISTKAIGREQYRRVDITEDYKYPEGSALE-LITSQRALHLTNNKIVSDTVDDLKYSLYAQ-NEVMVGKDVVLRLHIKNTAVNNRNVQIMVGGHVLTYNGIAIKKL-PMRKTHEMVHRQTDTYHTVSFAASQY---LSLLKQSPRLRFHVFSSCSETSQIYVTETIVTLGRPELVFEQLPSYWKKGEELRFTVRVQNPLRLELTDCVLWLDGNIMESRLSLPQRNIPANSFHQVNIALVPQYEGRKNMIVTFSSKQL 2509
+++ V+ +D N HHT +F+T + V RRGQ F L + L+ S H + LE TG P+ + TLV + D W + +S + + + ++ Y+L V +L + + +Y+LFNPW ED V+MP+ +EY+LND G + G+A I W FGQFEK L+ +LL+ + ++ D RD + R + A+++ +GVL G W D+ GGT P+ WTGS IL++Y TKQ V +GQCW F G+ TT+LR +GIP R+++ F+SAHDT+ N T D + ++NGE ++ M+ DS WNFH W+DAWM+RPDLP GY GWQAVD TPQERS G + GP+PL AI++G++ + +D RF+F+EVN D + W ++ +E I ++ IG+NISTKA+G++ RR DIT +YKYPEGS+ E + L L++ + V + + Q ++V++G V + +K +NV I+ + Y G + KL + KT ++ + ++ T++ + Y L++L P +R + + E+ +I +E + PE E LP+ + G+ L +N L + LTD L+ + S + + Q I P G K IV SSKQ+
Sbjct: 6 KELQVLHIDFLNQDNAVSHHTWEFQTSSPVFRRGQVFHLRLVLNQPLQ-SYHQLKLEFSTGPNPSIAKHTLVVLDPRTPSDHYNWQATLQNESGKEVTVAVTSSPNAILGKYQLN-VKTGNHILKSEENILYLLFNPWCKEDMVFMPDEDERKEYILNDTGCHYVGAARSIKCKPWNFGQFEKNVLDCCISLLTESSLKPTD-RRDPVLVCRAMCAMMSFEKGQGVLIGNWTGDYEGGTAPYKWTGSAPILQQYYNTKQAVCFGQCWVFAGILTTVLRALGIPARSVTGFDSAHDTERNLTVDTYVNENGEKITSMTHDSVWNFHVWTDAWMKRPDLPKGYDGWQAVDATPQERSQGVFCCGPSPLTAIRKGDIFIVYDTRFVFSEVNGDRLIWLVKMVNGQEELHVISMETTSIGKNISTKAVGQD--RRRDITYEYKYPEGSSEERQVMDHAFLLLSSEREHRRPVKENFLHMSVQSDDVLLGNSVNFTVILKRKTAALQNVNILGSFELQLYTGKKMAKLCDLNKTSQIQGQVSEV--TLTLDSKTYINSLAILDDEPVIRGFIIAEIVESKEIMASEVFTSFQYPEFSIE-LPNTGRIGQLLVCNCIFKNTLAIPLTDVKFSLESLGISSLQTSDHGTVQPGETIQSQIKCTPIKTGPKKFIVKLSSKQV 671 The following BLAST results are available for this feature:
BLAST of TCONS_00053572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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