TCONS_00053575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053575
Unique NameTCONS_00053575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053575 ID=TCONS_00053575|Name=TCONS_00053575|organism=Clytia hemisphaerica|type=transcript|length=729bp
aagttttgattacTCCAAGCAAACAGATTTGTTTGGCTATTAGATTTTCG
ACGAACGTATGAAATTATCGTCGTCAATTAATCAAGCTAATTGAGCTAGC
ATTAACAAtctagacaaatgaaatttttaattgtttcgtttaATTCTGTA
ACCAGATGTTTATCATGCCATTTTAAAACTTGATAATGTAAGAATTGAAA
ACACCTGCGGGTAACTGCTGCCAATAAACTCGATGAATTACAGATAGACG
CGTGCCAatgattagtttgattagttAAAAGAGAATCTTGTCGACCTATG
GGGATCAAAACCATCATTCTGCCACTCAGATATGATCCACTGACACATTA
GCACTGCAGTCTTATGAAAGAGCATAGaacataagaacattttaatacaT
TTCGAGATGGGTAACCGAGTTTCAACGAGATATTCAACGAGATATCCTCA
TTTATACCGAGCGTATCTCAGAACGTTTGAAGGGAGCAACACAAATGGAC
CGGGTAAGTGGATTGCCATCGTTTGCCATTTATAACAACACTTCTTCACA
TatgaattttcaatatttcccATGTACAAGATGTAAATTTCTGCTTGATC
TAGCCAACAGAACTACGAGGCTAACTCTTCCTtgatctgaaaatttcaaa
atcgcGATTTATAGAACTGTTAAAGTCATTAATTCTTACTTACCCAATTC
TTGTTGCAAGGATCTATTTAAATTATTGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:729380..730108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053575 ID=TCONS_00053575|Name=TCONS_00053575|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at scaffold_233:729380..730108+ (Clytia hemisphaerica)
aagttttgattacTCCAAGCAAACAGATTTGTTTGGCTATTAGATTTTCG
ACGAACGTATGAAATTATCGTCGTCAATTAATCAAGCTAATTGAGCTAGC
ATTAACAAtctagacaaatgaaatttttaattgtttcgtttaATTCTGTA
ACCAGATGTTTATCATGCCATTTTAAAACTTGATAATGTAAGAATTGAAA
ACACCTGCGGGTAACTGCTGCCAATAAACTCGATGAATTACAGATAGACG
CGTGCCAatgattagtttgattagttAAAAGAGAATCTTGTCGACCTATG
GGGATCAAAACCATCATTCTGCCACTCAGATATGATCCACTGACACATTA
GCACTGCAGTCTTATGAAAGAGCATAGaacataagaacattttaatacaT
TTCGAGATGGGTAACCGAGTTTCAACGAGATATTCAACGAGATATCCTCA
TTTATACCGAGCGTATCTCAGAACGTTTGAAGGGAGCAACACAAATGGAC
CGGGTAAGTGGATTGCCATCGTTTGCCATTTATAACAACACTTCTTCACA
TatgaattttcaatatttcccATGTACAAGATGTAAATTTCTGCTTGATC
TAGCCAACAGAACTACGAGGCTAACTCTTCCTtgatctgaaaatttcaaa
atcgcGATTTATAGAACTGTTAAAGTCATTAATTCTTACTTACCCAATTC
TTGTTGCAAGGATCTATTTAAATTATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033810XLOC_033810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053575-exon-scaffold_233-1491911889:729380..730108TCONS_00053575-exon-scaffold_233-1491911889:729380..730108Clytia hemisphaericaexon
TCONS_00053575-exon-scaffold_233-1510915933:729380..730108TCONS_00053575-exon-scaffold_233-1510915933:729380..730108Clytia hemisphaericaexon
TCONS_00053575-exon-scaffold_233-1575043694:729380..730108TCONS_00053575-exon-scaffold_233-1575043694:729380..730108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:729380..730108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22154	1.09769	1.14651	0.543877	0.575321	0.508937	0.964874	0.393445	0.238941	0.129006	0.85381	0.326294	0.964042	0.500989	1.16223	0.350386	1.26215	0.578317	1.378	0.874785	0.121731	0.207	0.552254	0	0.957705	1.43826	1.78191	0.586297	1.08786	0.888259
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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