TCONS_00053591 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053591
Unique Name	TCONS_00053591
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2203

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_233:900592..907058+

transcript sequence

>TCONS_00053591 ID=TCONS_00053591|Name=TCONS_00053591|organism=Clytia hemisphaerica|type=transcript|length=2203bp
CGTTTGTTCATTCGTCGTGGCATTGTGGTGTTGGCTGTTCGTTCTTGttt
tagCATTTGAGACAAAATGTACCAAGCCTCTTTGTTGTGGATTGCTTTCA
ACTTAGCGATCTGTTTCGCCGCAAATTTCGAGTTGACGGTTTTACACACG
AATGACGTACACGCGCATATCGAACAATTTAACGTTTACGGTGGTACGTG
TACTCCGGAAGACGCCGCTGGTAATAAATGTTACGGCGGTGTAGCACGGA
GACAAACAGTGATCGAAGAATTACGTAAGACCATCCCCAACACAATTCTT
ATTGATGGAGGTGATCAATTTGCTGGCACTCTGTGGTTTACTATTTACAA
AGGAAAAGCTGCTTTGAGATTCATGAATTACATCAAGTATGACGCAATGG
CAATTGGTAACCACGAATTTGACAATGGTGATCAAAACTTGATCGATTTC
ATGAAAAATACATCTTTCCCCATCGTTTGCACAAATATGGATGTGTCCAA
GCAAACGGATTGGCCAGATCCTCCAATTTATAAACCTTCCACAATTTTGG
AAAGAGGAGGCAAGAAGATCGGTATCATTGGATACACAACTCCCGATATT
ACTTGGCTCTCAAAACCAGGCCCAAACATTAAATTCAGCGATCCTGTGGA
GTCGGTCAGAGCAGAAGCCCAGAAATTGAAAGCTCAGGGGGTCAATATTT
TGATTGCATTGGGTCACGCTGGATATGCAAAGGATCAAGAAATAGCAAGA
TCAGTAAAAGAACTTGACTTGGTTGTCGGAGGACACACAAACACCTTTTT
GTGGAATGGACCCCAACCATCAGTGGAGAAAGTGGAAGGACCTTATCCAT
TCATGGCGCAACGAGATGATGGTACTGAATGTCCAGTCGTCCAAGATTTC
ACTTACGGAAAATATTTGGGTAATTTGAAGTTGACTTTCGATGAAAATGG
TAAATTGTTATCAGCTCAAGGAAATCCCATCATGTTGAATGCTTCTTATG
TTGAAGATGAGGAAGTTTTAAAAATGGTGGATGAAATGGACGACCCCATC
ATCAAAGCAAGAATGGATCCCATTGGTCGTTCATATGTCCGTTTAGAAGG
CGATCGCTCCATTTGTCGTTTGAAGGAGTGCAACCTGGGAAATTTCTTCG
CAGATGCTTTGGTTGACGCCCAAGTGAAAAATCCTTCCACAGAACAATGG
GCTGAAACTGTTCTCGCTATCTGGAATGGTGGTGGTATCAGATCTGGAAA
TATTGACAAAAGATTTGATGAGCAAATCAATAGAGAAGATCTCAGCACCA
TCAGTCCTTTCGGAAATACAGCTGACCTCATGGAAATCAAAGGCAAATAT
CTACTTCAAGCATTTGAACATGGATTTTCTGGTATTGAAAACAACGAAGG
ACGATATCCCCAAGTATCAGgaTTTCGTGTCACCTACGATAAGACGAAGC
CAGTTGGAAGTCGCTTGATCAGAGTTTTAGCTTTATGTAACAAATGTCGC
GTTCCTAAATACgaagaaatcaaagaagaacaaatctataagGTCGTTTC
TTCGGATTATTTGATCAGTGGAGGTGATGGATACAGTATGTTTCTGAACA
AAGAGAGTTCCACTAAAGGTGAAGATGCACTGGAAGTGTTGGAGAAGTAC
TTCCAAAAGATGTCGCCAGTCACCACCCCTGATGAAGGGCGGACAATTGA
AGTCAGCACCAGCAAGGATTACACCAAGACAGACGACGATTGTTCATCTG
CATCCTTCATCTCGTTCAACCCTATCTTCATTGTTGTCGTTTTGTTCATA
TCCTACTTTATTTAGTGAATGAAGTATTCGGTCcttcaatattgaaatca
tatgTAATACTTTAAAtgtaatattttaaacaaacttGTGGATACTGTTC
CTCTCCTAGATTCTCATGAAGCTATCTTTGAGCACACACCATGTGACAGA
CCCGGTggcactggaaaattgactttggtgtCATCCCCATCTGAAATTCC
ATTGATAATAtcgcactccaaaaccatccatTCATTCTGGAGTTTTTAAG
CTTGAAGCGAatgaatttctatccccattgtaAATTTGATCGAAATTATA
TCGCGATGAGCTCCACTGGGAGCACTGAGATAGAGATGTTTTAGTTATCG
TCTCCATTTTACTTGGAAGAAATTTATGTAAAATGTATGTCTATATATTG
AGT

Run BLAST on NCBI

transcript from alignment at scaffold_233:900592..907058+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053591 ID=TCONS_00053591|Name=TCONS_00053591|organism=Clytia hemisphaerica|type=transcript|length=6467bp|location=Sequence derived from alignment at scaffold_233:900592..907058+ (Clytia hemisphaerica)
CGTTTGTTCATTCGTCGTGGCATTGTGGTGTTGGCTGTTCGTTCTTGGTA
AGTTCTCTATTATTCTCTAATCACTCTCATAAACTGAAAATGTTTCCTCT
GTCGAAAATGGTCATCAACTACACTCATTATCATAGCCTTTTTAAATTAT
CAGGGCTATCGATTGTACGTTAATGGTGATCATTCTAAAAATTCGAATGG
ATTCGACCATGCTGCATGCGATGAGTTTCGACTTATGACGTCGTCGTTTC
TTTAAATGTAATTCCAAGACAACCTAAAtcagaagaaaatatttttagct
aAAGCCATGAGAACactttgtaaatatttcttggaGCACGGTGTGTCATG
ACAGTTTTCGAAAGGCTAGGTTTGAAATCTCGAGTCTTCAAGAATTTTCA
ACTACAATACAACAGCTGTAGTtatgaaatggaaaattttattaaaggtt
ttgtttttaaataagtctgatatcgtttgcttactatactcatcaatttt
aattcacaagctttttcacgttggattgacatggatgtggagtaagattg
gccagaaagatgaaaagaaaaacatctttttgcttatatcagcataacat
aacaaggactacactgtcctgatatgaaataagtgtctgatatgaaacgg
aaacacttctgtaaaaataaaacctttaatccgTTATGTTGAAGTCGAGA
AAATTGgatgatgttttttttcaaagtctaTAAAGTGAACTGTTTGTCTG
GACATTATTTCCAAGTTGATTCTCCAGATCTTGATCTTAATCCTTTCCCT
AAAAAGGAAGACTTAATTGGATAGAAAACATCAGattaattgaaataaaa
acattgtcAATTGACATTTGAGGCGTGTGGAACCAAAATAAATCATTAAA
GAACAACATAACATTTTAAGCTTTTGTGGTCGAGGGTGgttaattaaaat
tgaaaaaaagcttCAATGACATGAACTTTTGGCTTTAGTGAGATATTTGA
ATGAATATATTACACTCACTTTTTTGAAcatttatttgattttcagtttt
agCATTTGAGACAAAATGTACCAAGCCTCTTTGTTGTGGATTGCTTTCAA
CTTAGCGATCTGTTTCGCCGCAAATTTCGAGTTGACGGTTTTACACACGA
ATGACGTACACGCGCATATCGAACAATTTAACGTTTACGGTGGTACGTGT
ACTCCGGAAGACGCCGCTGGTAATAAATGTTACGGCGGTGTAGCACGGAG
ACAAACAGTGATCGAAGAATTACGTAAGACCATCCCCAACACAATTCTTA
TTGATGGAGGTGATCAATTTGCTGGCACTCTGTGGTTTACTATTTACAAA
GGAAAAGCTGCTTTGAGATTCATGAATTACATCAAGTATGACGCAATGGT
AGGTCCTATTTCTCCCTTTTTTAAGCTTATCCAAACTGCTCTTCTGTGGC
AATTCTCTCCAGAATGTGCATCCTTTATCTCTTCTTCCATCTCATAAATG
GGCTCCAAGAGTCTTTAATGTCTAGACAAGGGAAAAGACTTCAACCATAG
CAGGAACTTTTAATCCACCAAAGTTATCTTTTTACTATGTAGTGGGGGTT
TAGAAATGATTCCCTATAGTCAACCTTGTACAATTATCTGGTGTAGATAT
TTTCTCTTATCACCTTACAAAAtacttttacaatttttctgTTTACTACA
GGCAATTGGTAACCACGAATTTGACAATGGTGATCAAAACTTGATCGATT
TCATGAAAAATACATCTTTCCCCATCGTTTGCACAAATATGGATGTGTCC
AAGCAAACGGATTGGCCAGATCCTCCAATTTATAAACCTTCCACAATTTT
GGAAAGAGGAGGCAAGAAGATCGGTATCATTGGATACACAACTCCCGATA
TTACTTGGTATGTATTCATGAATatgaattttcgaattttttccgAAACT
TGTATCTAGAGTCTTCATTTGAATTTTAACTCTTAAGAGAGTTCTcggga
tttatttatttattttttatcaaactattgaaaatatCCGAAAAGCTGTT
TTCCGGTTGTTGTTTTGACAAGTTATAATTTCTTAAGCTGAgaagatatt
caaaatgaacCAACAATGGTGACGTTTTATTTTTGTGACAATAGAAATCT
TAAACTGAGACATTCCTATTTTGTAGGCTCTCAAAACCAGGCCCAAACAT
TAAATTCAGCGATCCTGTGGAGTCGGTCAGAGCAGAAGCCCAGAAATTGA
AAGCTCAGGGGGTCAATATTTTGATTGCATTGGGTCACGCTGGATATGCA
AAGGATCAAGAAATAGCAAGATCAGTAAAAGAACTTGACTTGGTTGTCGG
AGGACACACAAACACCTTTTTGTGGAATGGTAAGAAATctatttattttt
actttttggtcccaaaaaattgttcaataaatttaaagcattttttaaCC
AAAAGGTAACGAATCTAGTCATTTTTTGAGTTAGCTTTTGATCTTCCATG
AAATCTTATTATTGTCAAAATTCATTAAATCTCATAATTTTCTCTTATTC
AGGACCCCAACCATCAGTGGAGAAAGTGGAAGGACCTTATCCATTCATGG
CGCAACGAGATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACTTAC
GGAAAATATTTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATT
GTTATCAGCTCAAGGAAATCCCATCATGTTGAATGCTTCTTATGTTGAAG
ATGAGGAAGTTTTAAAAATGGTGGATGAAATGGACGACCCCATCATCAAA
GCAAGAATGGTAATTGTTTTAAGATAAGCTTTAGAAACGCAAAGAACAGG
CTTTTAGAATCTgccaacttaaaaaaaaaatcctcaaaTCTAGATTCATA
TTTAAAGTTTCCTTGTGAttatgaaactaattttctttatttattatcaa
aataaaaccaaataCACCCTCGTCCACGCCTTACAGGTTAAGGAGATTCA
TACCCCTTAATACATCTTTTTTTATTAAGGATCCCATTGGTCGTTCATAT
GTCCGTTTAGAAGGCGATCGCTCCATTTGTCGTTTGAAGGAGTGCAACCT
GGGAAATTTCTTCGCAGATGCTTTGGTTGACGCCCAAGTGAAAAATCCTT
CCACAGAACAATGGGCTGAAACTGTTCTCGCTATCTGGAATGGTGGTGGT
ATCAGATCTGGAAATATTGACAAAAGATTTGATGGTAATTCTTTTAGTCC
TGGAGAAAAGTTTTATTGCACCTTTACTTCAACATCATATTGTACGGTTA
CTCTGATCTCAAACAAGATTGAATAAAATCTTGAAGTTTTTGTTCCTAAC
AGACCATGCGCTATCAATTTCTATCATTACATAAATAGTCTTCTATTTCA
CACATGCTTGAGCAAGGGAATTTATTTCAGGTAAtgcatattttccaaat
tcTTTGTCAGATAAATCACGAAGTTGAATATTTGCTACGGTATCCACGTA
GAAACTTTACTACAACTTTTTAATAtctgtaaattttatttttttcgttt
ttcatacAGAGCAAATCAATAGAGAAGATCTCAGCACCATCAGTCCTTTC
GGAAATACAGCTGACCTCATGGAAATCAAAGGCAAATATCTACTTCAAGC
ATTTGAACATGGATTTTCTGGTATTGAAAACAACGAAGGACGATATCCCC
AAGTATCAGGTATTAATTCCTCTCTTTTCTTTGAAGGTACAGAATGACAT
TTACAGGTTAATAAGATAATGCACTAAGCTGGATTATATCAACGAGTCTT
TGATTTTGTCCAGACGTTTCTACTTGGTGTCAAGAAAAAGAGAAGCTCAA
ATTATCAAGAAATAAGATAAGAAATTAATTATGTCCCGTTTCTTCATCct
ctttcatcttcattttaatcTTTATGATGAATCGACTCAAGATTATCCTT
TTCACAAGGTTACATTCGAGACCAATACAttgttctcaacatgttcttat
tttcaccattttgtgggtGTATTTGcccatttccctaagaaatcgggtgt
tttagagtctgtaaagccttaacttgttcttaatacttCGGCCATCGTAG
CCTAATATTCTTACAGAAAATACATGAATAGCAAAATgcaatcatagtat
aagaaagccgcggctggaatgataacatctgaatttctgttgctctatct
ctgtcgtatttgatgactatttgttgatcaagaaatcagtaatgtagcat
cttcgattgtaaattttattggtttgtcgttaatacttacttatCAGTGC
GTTTtaaacattaatgatatgcccttgataatacagttgcattataaaat
cattgtaaaggaaagatcaacaacaagaaatttaaacaagcacaaaattg
ctgggctgaaagaactcaaatattaataaagtgcctccgaatgccttcac
aatatttcagtgaaatctttttaaaaatcaatgaaaaagtacgtcaagat
aatactgtgaaaatttcaagccagcaccctcAAACCACCCCTagaatatg
tccaaaattagttcaagtgttctattggatacagattcaaagatatttac
caataaaaaaactttttatgaaggaaaatgagagaaaaatttcaaaaact
atctaccaataataaactgagcatcttgatgttcttataaagctcggaga
cagagatggaacagcaattaaataaaaagacagtgcggtacatattccag
ccgcagctttcttatactatgatgcAATGACTGTCAAttaaaaaatagcc
aaaaactAAAGAATTCtcgtcatcaaaacaaagtatTAATCCACTTACAA
GCTAGAAGAGATCAAATTACTGCAACTTAATTTCTTCATCATTATGACCA
CACGTCTTACCGCAAAACTTAATTAAAGATGTTGATAGTGCAGAATCAGG
CTTGAGAAGCAATTGATAAGCGTATTAGAGAGTATGTAAACTCTACAGTG
ATGAATGTCATAAgtaaggtttatttttcttaggaTTTCGTGTCACCTAC
GATAAGACGAAGCCAGTTGGAAGTCGCTTGATCAGAGTTTTAGCTTTATG
TAACAAATGTCGCGTTCCTAAATACgaagaaatcaaagaagaacaaatct
ataaggtttgtttattttttttactattGTGCAGTGATCTCTGATTTAGG
TTAGGGCATATTCCCATTTTTGGGAAGGTGTatgtcttgtcttgtcttgt
tTATTTGCTACCATCTCCATTGAACGAATGAGAAAAATGGTTTGCCCTTG
ATTGACcctgaagaaaagaaaaaagacatGATTTTTCGATTCTACTGTTT
CGTAGTAACATCACCAACTGGGACTTGTAGATCGTGAACAAAGTCCAGTC
TAGCATCATACAACCTTACCCCGTGACCCTCTCCTGCATTGTACAGAGCT
GCTAAACTTTTCTGGTATTCtaaacaagaaagcctaagcggTGTAAAGGC
CCAGCAGCGTTGGTAGTGTCAACATATTTTTCGTTGCAGAGTCGCCATAG
AACTTAATTTGCAGGAGTGAATTTTTTCGCATACGTCTGCATGCGCACAA
TAGAAAGTCAGATAATTCGATTTTTAACCTAGACTCATCAATTGATTATT
GCGCGCATGGGCCCTGACAAAGTCAAATCTTTTCGACCAGTTGTGTTTTA
AAGGCCTATTCCGTTGCGCCCTGGGCCAACTAAATCATCTATACACAAGT
TATTTATGTGTTagttttttggatgtttttcatTTGTGGCGAATGTTTTC
TTTCAGGTCGTTTCTTCGGATTATTTGATCAGTGGAGGTGATGGATACAG
TATGTTTCTGAACAAAGAGAGTTCCACTAAAGGTGAAGATGCACTGGAAG
TGTTGGAGAAGTACTTCCAAAAGATGTCGCCAGTCACCACCCCTGATGAA
GGGCGGACAATTGAAGTCAGCACCAGCAAGGATTACACCAAGACAGACGA
CGATTGTTCATCTGCATCCTTCATCTCGTTCAACCCTATCTTCATTGTTG
TCGTTTTGTTCATATCCTACTTTATTTAGTGAATGAAGTATTCGGTCctt
caatattgaaatcatatgTAATACTTTAAAtgtaatattttaaacaaact
tGTGGATACTGTTCCTCTCCTAGATTCTCATGAAGCTATCTTTGAGCACA
CACCATGTGACAGACCCGGTggcactggaaaattgactttggtgtCATCC
CCATCTGAAATTCCATTGATAATAtcgcactccaaaaccatccatTCATT
CTGGAGTTTTTAAGCTTGAAGCGAatgaatttctatccccattgtaAATT
TGATCGAAATTATATCGCGATGAGCTCCACTGGGAGCACTGAGATAGAGA
TGTTTTAGTTATCGTCTCCATTTTACTTGGAAGAAATTTATGTAAAATGT
ATGTCTATATATTGAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033816	XLOC_033816	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_233	supercontig	scaffold_233:900592..907058 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54915	1.82581	0.991493	0.493635	41.4882	31.2992	33.2461	35.1666	22.0094	15.5524	15.5647	18.4061	55.4404	59.1701	19.3949	20.0622	14.206	18.0105	220.736	223.085	14.3368	13.3053	5.09661	6.44932	5.1243	4.22594	22.1886	16.9911	0.701142	0.726665

Blast

[Close]

BLAST of TCONS_00053591 vs. Swiss-Prot (Human)
Match: 5NTD (5'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 7.885e-126
Identity = 217/541 (40.11%), Postives = 328/541 (60.63%), Query Frame = 1

Query:   76 ASLLWIAFNLAICFAANFELTVLHTNDVHAHIEQFNVYGGTCTPEDAAGNKCYGGVARRQTVIEELRKTIPNTILIDGGDQFAGTLWFTIYKGKAALRFMNYIKYDAMAIGNHEFDNGDQNLID-FMKNTSFPIVCTNMDVSKQTDWPDPPIYKPSTILERXXXXXXXXXYTTPDITWLSKPGPNIKFSDPVESVRAEAQKLKAQGVNILIALGHAGYAKDQEIARSVKELDLVVGGHTNTFLWNGPQPSVEKVEGPYPFMAQRDDGTECPVVQDFTYGKYLGNLKLTFDENGKLLSAQGNPIMLNASYVEDEEVLKMVDEMDDPIIKARMDPIGRSYVRLEGDRSICRLKECNLGNFFADALVDAQVKNPSTEQWAETVLAIWNGGGIRSGNIDKRFDEQINREDLSTISPFGNTADLMEIKGKYLLQAFEHGFSGIENNEGRYPQVSGFRVTYDKTKPVGSRLIRVLALCNKCRVPXXXXXXXXXXXXVVSSDYLISGGDGYSMFLNK-ESSTKGEDALEVLEKYFQKMSPVTTPDEGR 1692
             ++LW A       A  +ELT+LHTNDVH+ +EQ +     C       ++C GGVAR  T ++++R+  PN +L+D GDQ+ GT+WFT+YKG     FMN ++YDAMA+GNHEFDNG + LI+  +K   FPI+  N+            +Y P  +L  G + +GI+GYT+ +  +LS PG N+ F D + +++ E  KLK   VN +IALGH+G+  D+ IA+ V+ +D+VVGGH+NTFL+ G  PS E   G YPF+   DDG + PVVQ + +GKYLG LK+ FDE G ++S+ GNPI+LN+S  ED  +   +++    +       +G++ V L+G    CR +ECN+GN   DA+++  +++     W    + I NGGGIRS  ID+R +  I  E+L+ + PFG T DL+++KG  L +AFEH       + G + QV G  V YD ++  G R++++  LC KCRVP Y+ +K +++YKV+  ++L +GGDG+ M  ++      G+  + V+  Y  KM  +    EGR
Sbjct:   17 GAVLWPA-------AGAWELTILHTNDVHSRLEQTSEDSSKCV----NASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRS-PIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGR 545

The following BLAST results are available for this feature:

BLAST of TCONS_00053591 vs. Swiss-Prot (Human)

BLAST of TCONS_00053591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
5NTD	7.885e-126	40.11	5'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1	[more]

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TCONS_00053591 (transcript) - C. hemisphaerica