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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053595 ID=TCONS_00053595|Name=TCONS_00053595|organism=Clytia hemisphaerica|type=transcript|length=2719bpRun BLAST on NCBI protein sequence of TCONS_00053595-protein >TCONS_00053595-protein ID=TCONS_00053595-protein|Name=TCONS_00053595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp MEIPHAVLAGGWIPFTVVLVLTFIFSWVYIRLFQHHDSSKVASTLGSIIGRun BLAST on NCBI transcript from alignment at scaffold_233:986182..1005222+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053595 ID=TCONS_00053595|Name=TCONS_00053595|organism=Clytia hemisphaerica|type=transcript|length=19041bp|location=Sequence derived from alignment at scaffold_233:986182..1005222+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:986182..1005222+ >TCONS_00053595 ID=TCONS_00053595|Name=TCONS_00053595|organism=Clytia hemisphaerica|type=CDS|length=22806bp|location=Sequence derived from alignment at scaffold_233:986182..1005222+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053595 vs. Swiss-Prot (Human)
Match: LMBD1 (Probable lysosomal cobalamin transporter OS=Homo sapiens GN=LMBRD1 PE=1 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 1.725e-102 Identity = 199/514 (38.72%), Postives = 314/514 (61.09%), Query Frame = 2
Query: 74 AVLAGGWIPFTVVLVLTFIFSWVYIRLFQHHDSSKVASTLGSIIGLFITLLTIALVPVDVFLVSYMKNPDGSFKDWVNDNSTRNSIESTVTYAYYTLYXXXXXXXXXXXPFMYFFFEDPEEDELSTKQKCCTSLKYTVVFLIIAFVILMTGAFVPLKTPSSQNITGIDDKIDFLKDQLHQYTHADQAMSIMVGVMSMFGMFTLILYTGYGMSALPLGMIRCCRK--YEETESNPRRVTKKERDADKLNALRTKSNSGRNLSRYERNELRRLEQDERIQHRIDRKKSRVKNNCLGKAQRILKPFEVVFGFAFLAISLLMMVSLTITNVDKELNSLGYKQGYSLPVPKLQNPVNIIMVYASKVFPLDYVLFSGMALFFIFASMNGLKRMGIWCCCIRLFKIRTGRTMPQAXXXXXXXXXXXXXXXTIVLFNITPQYVQYGNQMYQHHTTST------NGTISTDVKKCTTDAPKGNCTMSSLALLLNTLFYKAWFFGAFYHWSIWFLLLVYYMAFL 1591
A L GW F ++L+ F W+Y+R +Q S+V ST+ +I L I L+T AL+PVD+FLVSYMKN +G+FKDW N N +R IE TV Y YYTLY ++ VF +PF+YF++E+ ++D+ S + T+LKYT+ F++I ++L+ GAFVPL P+++N T + K+ L ++L +H A+S + +++ GM I YT YGMSALPL +I+ R YE E N + + E+ + +++KS GR L ++ L++ E+ R + +R ++N+ K L+P ++V+G F+ ++LL ++SL ++N+DK L+S G G+ + L NP+N+++ VFPLDY+L + + ++FIF SM G++ +GIW IRL+KIR GRT PQALLF+ I++ +VL + +++++ PQYV YG+Q Y T T N T+S K+C DAP+ CT++ L L +K WFF A Y++ W L V+ + +
Sbjct: 9 AELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFLVSYMKNQNGTFKDWANANVSRQ-IEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWE-KVKSLFEELGS-SHGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSAAYERLE-NTEDIEEVEQ---HIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRERHLEFIENSWWTKFCGALRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLNMLLPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVP-KRCDADAPEDQCTVTRTYLFL----HKFWFFSAAYYFGNWAFLGVFLIGLI 510 The following BLAST results are available for this feature:
BLAST of TCONS_00053595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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