TCONS_00053670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053670
Unique NameTCONS_00053670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053670 ID=TCONS_00053670|Name=TCONS_00053670|organism=Clytia hemisphaerica|type=transcript|length=321bp
TCAGAGGATAGTTTCGCTGCGCATGCTATTGCTGGAAAAATGCTAAGTTT
TAGGTAAAAAATCATAtgactttgttttgttttgagttttttttttcgga
gACGTACAGTCGGGTCTAGTCTAAGTCGGGTCTAACCAACGCTTCATCGG
ATGAATAAACTGAGCTATACAACTGCACCCGACTGAGTACAGTCATTCTG
TCAGAAACATTATCAAAAGATCAATCGAACAgTTTTATCAATTAAAACAA
ATAACTTTAATTAGAAGAAGCAAATGGTGCGGGAGAAAGGAGACCGAGAG
AAAGAACCTCTTCTGCANGAG
Run BLAST on NCBI

transcript from alignment at scaffold_233:632120..637085-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053670 ID=TCONS_00053670|Name=TCONS_00053670|organism=Clytia hemisphaerica|type=transcript|length=4966bp|location=Sequence derived from alignment at scaffold_233:632120..637085- (Clytia hemisphaerica)
TCAGAGGATAGTTTCGCTGCGCATGCTATTGCTGGAAAAATGCTAAGTTT
TAGGTAAAAAATCATATGACTTTGTTTTGTTTTGAGTTTTTTTTTTCGGA
GACGTACAGTCGGGTCTAGTCTAAGTCGGGTCTAACCAACGCTTCATCGG
ATGAATAAACTGAGCTATACAACTGCACCCGACTGAGTACAGTCATTCTG
TCAGAAACATTATCAAAAGATCAATCGAACAGGTATTTGTTTATTTTATC
GATTTTTCCTGTTTGTTTTGGGTACATCAAGGGTATAACTATATATTCAT
GCACATATAAAGTATAATCCTTGAATTTTTGTATGGCTTGGGCGTTTATG
TCCATACCACCATTTATTAATGTATTATTATCATCATTCTCATTGAGAAN
AATCAAGGATATAACTATATATTCATGCACATATAAAGTATAATCCTTGA
ATTTTTGTATGGCTTGGGCGTTTATGTCCATACCATACATATGGTTTATG
TATGTATTAATGTATTATTCATCATTCTCATTGAGAAATGAATACCGTGA
AGTCGGGGAACCCAGTCTGGAAAGGAGGGAAATGTTACGCTGGAGCTGGG
CCAACTTAACTACGACCCTCGACATGGCCTGAGAATAGACCTTTTTTCAA
AGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCCAGCTCGGGCCATAC
TCGGGCTTTACGCAAATTCCAATAAAAGTTTTGGCCCGAGAATTCTCGGG
CCATGTCGAGGGTTGTACTTAACTGGGAAAAGTTGAAGGCAGCAGATCTC
AAACCTCAAATCTACGCCTGAGATATCCGGCGCACAAGCCACAAATTCTT
CTTCATAAAGACGAAAGACATATCTGGACTTATTTCGTACTTTCCAGTCT
CTTGTTGGTAGTTTTTCTGACTTCCTGGATCTATGTGATCTATGTTTTCT
AACTGACTGATTGACTTTTACCGAAAGATTGCCACCAGGGTGGGATTCGA
ACCCACCAAATACTTAAAGTTCCATCGTTTGGAAATTTATGAGGAAGAAG
GAAATTTTTAGAAGATGCTTTATTCGATATGAGGATCCCCATTTCCGTAA
AATCACGATTCCCCATGGTTGGGAAATGGTGGCTATGGGTGGTAATTCCT
TTGTTCTTTTGCTATTTTCTATTGTTCTATGTGACGTAAAGACACTTCAC
AAATCGATGTACTTGCACTAACTGCCAATGCCTCATCCACTGTGCCATGG
ATTCATGCTTGGAGAGTGTTTCTGACGGCTATTTATATTGTATATACAAA
CTACAGACCAGACTATACGGAAGAGAAAATCACAAAAGAGTACTTTTTTC
TAGCTCCAACCCTACATAACTGATAATACCCAATTCCTATTTGGTGTAAC
TTTTTTATTCAATTGAGCATAACTTTTATCTAATCTAATGAACCAAATTT
TATAAATCACCCATCAAAATTTAAATTTATCTCTCTTCAATGAAAAAGAA
TTGATTATTTTTGAATTTTTAGACCTTGAGAAAATTCACTTTAANTTCTT
CAATGAAAAAGAATTTATTATTTTTGAATTTTTAGACCTTGAGAAAATTC
ACTTTAAAGAGAGAAAAGGATTTTGTGACCCACCCAGTAGTAGTTAATTT
TGATTTAATACATCTTTAAAATGTATATATAGCAATGTATACAATCTTTA
AAAGAAAGATATTATTAGTAATTATGAAAACTTTTAATTGGAGCTGTTAG
TCGAATTTTTGAATGAATCCTGATGTTAATTGTGATCAGAGGAATGTAAA
GAGATGGAAAAACAGCTTTTCTGATTACTCAAAGTTCAACGATCACTTCT
ATTGAAAATTGTATTGTAAAAACGTTGATTAGGTCAGTAAATGAAAGTAC
AGAAAAGACTGCTCGCCATACAAATTGGACAGTTTCTACATGATTTGACG
ATAAAAATGAAAATTTGTTTTTCCTTTTTTGCCGATTACTAGTTCAATTT
TTAAGAATAAGGAGCAATATTTTTACCAATGTATAGCAAAGGAAATTCTT
AACTCAATGATATTAAATTGGTTTTTGTAAAACTGTCAGAAGTTGAGTAA
AATCAAGATGAAGTTATAATTTTCTCGAGCTCTAGCTTTCCATATTATGG
TGCTGTCATGATGCGGTTATATCAGTAGAATCGCTAGGAAATTCTGAGCA
AGAAGATATAGGTACCTTTTCGTATAGGAGAGGTGTACCCAAAATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAGG
CTTGAAACAAAAGAATTTTGTCGCAACACGCTAATTATGCAGATTTTTTA
TAGCGACAACAAAAGAAACCTATTTACTCGACATAAACTCCCTTACTGGC
AAGAGACCTGGTATATGACGAGCTGTTTTTCCATCTCTTTACATTCCTCT
GTTGTGATGTACTATCATTCAACATGGAAATTTTTGGTTAAGGGTTTGAT
CTGTTTAAACTGGAAAATCGGATTTTACCTGAATACAATATTTTGAAAAT
AATTACTCTTGTCGTGTGTCAATTTCTAAATAGTTATCTGATTTGTCAAA
AGTTTTGAAAATAAGGAATAAAGAAAACCAGGCTTATTTTGAGGGTGTAA
TTATCTTGTGGTGTAATTGTTAGAGCTTCCAGTAATAGGAAAGATAATAT
TTTTTCTGGCCTTTTAAGGATGTTAATGACAAATTTTTTCCTTATATAAT
AGCTCAAGCATCTTATCGACTGGCAACTTGAAATTCTTGTGCAAAAATCT
AGATCCCACCCCGAATCTTTGAATTAAAAATATTTTTTACTTTTCAAGCA
AAGATCTTCCCAATGAGAATAATCTAGTGTTCTAGTCTTAAATTGATATG
TTTCAAAAATGAAAAGTAATATAAACTTTAAATTATGGTAAGCAACCCGT
CATTTCCTTTATTGTGGTTTTGGCTTTCAACTAATAAAGGCTTCAATTTC
TGAAATTAAATTTGAAATTTATTACTGGCATTCTTGTAATTTGGTCTTAT
GCTGGCTGTGTCTTATAATTCTGTCACCGAAGAGATTATAGTAGACATTT
GATGTGAATTGCTACACCACAATCTTGAATATCATGCAAGAATATGAAAG
GCGAATCTGCTTGACCTCTTAATTCCTCAGAAAGTATGCAAATCCTTTTT
TTTTTCACACACAAACCAAAATCTAAAATTACTTTTCTTTTCTAAGACCT
AAGTCTAGAAATTCGTGATATGATAAGATGCGAGTTGCGAGTTACGAGTT
ACGAGTTACGAGTTGCATTTAAAACCACGAGTTGCGAGTTACTTTTTACG
AGTTACGAGTTACGAGTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTAAAATCGCGAGTTGCGAGTTACGAGTTGCATTTTAACACACAAAATT
CGCGAGTTGCAAATTAAAAGTGCGAGTTGCAAATTAAAAGTGCGAGTTGC
AACTTAAAAGTGCGAGTTGCAAATTAAAAGTGTGAATTGCAAATTAAAAA
CAAGTCTGAGGCTGTTATCTTAAATAATAACAGCAAAAAAAGCTTAAAAC
TAAACCCAAAGGAAGGCATGGAAAACCCAGCCAAACTTGAATATAGTATG
AAAAAAAAAGAATACAAGAACAAAATATAAACAAGTCCAAATCAAAGCTA
CACACCTTAGCTCTCCTTTATTCATATCACCATGGTTACTTAATAGTATA
GTTAAACATTTCCGGAATTGAAACAAAGAGAGAACGAACTTGTACGAGAA
CAATGGAAAATTAAGTGAGAAAGCGCCTCTTATTTTAACCGTAATGTAAG
CATTACACGCTTTATTTTATAAGAATACACTTTATAAGAATGTCCATGAT
GAAAATGGCCAAAAAATTTAGAATATGGTAAGAATATCACCATAATGGAA
TTTTGAGACGTATGTACTAAATGTTACATCTAGTCTGAATTAGGACCCTA
ACCTAAGAATGCTGTAAGAATATTTTAGGATGATTTTCCCAAAAAAGTTA
AGAATATCCATGATGAAATAGATTTACACCATTCTTANTGTAACTCGTAA
CTCGTAAAAAGTAACTCGCAACTCGTGGTTTTAAATGCAACTCGTAACTC
GTAACTCGTAACTCGCAACTCGCATATGAAAANAGCGTGTACTTGGACGT
TAAAACAATGTTGAAATAACATTGTATGCCAGCTGCTGGGTTGCTACACA
AACTAGCTACAGTAAACTACAGTATTATAACCTGTTATAACACATATTCG
TCACATTTTGAAAAGCAATAAAAGAGCATTGAAAGAATAGAAAATTGTTC
TGCTATTGTATTTATAATTATTTTTGNGAATTAAGAATTACTTTACAAAA
GTTTTATAATAATGGTACATATATCAATAAATGGTACATCTTTTTAATCA
TTTGTTACTAAATTTACTTGGTACTAAAGCAGTTTTCATAATTGTTATCA
TCAACTTTTAGGTATCGTTGGTATATCTTAGCATTGTTTACATGTATNTG
TTGAAGTTTGTGGATTGGAAGCTTTCATTTATTCTTTTAAATTGAATAAG
CAATTTAAAAAAAATTAAAGTATTAGATAGAAATGATGAAAACCAATATT
ATACTTCTCTTACCGATTCCTTTCTAGTTTTATCAATTAAAACAAATAAC
TTTAATTAGAAGAAGCAAATGGTGCGGGAGAAAGGAGACCGAGAGAAAGA
ACCTCTTCTGCANGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033851XLOC_033851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053670-exon-scaffold_233-1575043694:636854..637085TCONS_00053670-exon-scaffold_233-1575043694:636854..637085Clytia hemisphaericaexon
TCONS_00053670-exon-scaffold_233-1575043694:632120..632208TCONS_00053670-exon-scaffold_233-1575043694:632120..632208Clytia hemisphaericaexon
TCONS_00053670-exon-scaffold_233-1510915933:636854..637085TCONS_00053670-exon-scaffold_233-1510915933:636854..637085Clytia hemisphaericaexon
TCONS_00053670-exon-scaffold_233-1510915933:632120..632208TCONS_00053670-exon-scaffold_233-1510915933:632120..632208Clytia hemisphaericaexon
TCONS_00053670-exon-scaffold_233-1491911889:636854..637085TCONS_00053670-exon-scaffold_233-1491911889:636854..637085Clytia hemisphaericaexon
TCONS_00053670-exon-scaffold_233-1491911889:632120..632208TCONS_00053670-exon-scaffold_233-1491911889:632120..632208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:632120..637085 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633463	0	0	0	2.98991	4.38781	3.25767	3.04979	0.266904	0.99181	0.320892	0.843766	1.05324	1.75008	0.719403	0.579022	0.713308	0.487412	1.34677	0.352325	0.612468	0.448111	1.08947	1.32065	4.76085	3.33846	1.30291	0	0.703095	0.358171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top