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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054041 ID=TCONS_00054041|Name=TCONS_00054041|organism=Clytia hemisphaerica|type=transcript|length=4345bpRun BLAST on NCBI protein sequence of TCONS_00054041-protein >TCONS_00054041-protein ID=TCONS_00054041-protein|Name=TCONS_00054041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp MTNQVMPRNVERTRSTGPSEVSLVIKYLLFALNVLFWIVGLVMILIGVYARun BLAST on NCBI transcript from alignment at scaffold_238:77069..94065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054041 ID=TCONS_00054041|Name=TCONS_00054041|organism=Clytia hemisphaerica|type=transcript|length=16997bp|location=Sequence derived from alignment at scaffold_238:77069..94065- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_238:77069..94065- >TCONS_00054041 ID=TCONS_00054041|Name=TCONS_00054041|organism=Clytia hemisphaerica|type=CDS|length=7938bp|location=Sequence derived from alignment at scaffold_238:77069..94065- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054041 vs. Swiss-Prot (Human)
Match: TSN33 (Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 4.531e-55 Identity = 110/276 (39.86%), Postives = 166/276 (60.14%), Query Frame = 1
Query: 79 MPRNVERTRSTGP--SEVSLVIKYLLFALNVLFWIVGLVMILIGVYAKTQKSLGEIGNTLPWYMDPANLFIIIGSIVFFLAFVGCIGSLRENVCLLRTFEYTIDVLLLLEVAIAVYVYVDREKVKKNVEDVLKDTISNYRDDPDLQSIMDWVQMEMQCCGVAGPEDWEGNIYFNCTNDLNKSGEKCSVPHSCCKDYKTE--LNAQCAYGIRKPEVSDVERSQVIYTDGCLQKTFDKFLN--QDNLILLVCVGGAMVLLQLVTTGLAHHLVDGIRRQ 888
M R ++G S VS ++KYLLF N+LFW++ +VM+ +GVYA+ K L +DPA L I++G ++F L F GCIGSLREN+CLL+TF + + LL++A + +V +K + V +++ + I +YRDD DLQ+++D+ Q + CCG +DW N+YFNC+ D N S E+CSVP+SCC + +N C G++ + +E S+VIYT+GC+ DK +N NL LL V + + QLV L+ LV+ I+ Q
Sbjct: 1 MARRPRAPAASGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLA--VDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSED-NPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDY--LEASKVIYTNGCI----DKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQ 267 The following BLAST results are available for this feature:
BLAST of TCONS_00054041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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