TCONS_00054688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054688
Unique NameTCONS_00054688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054688 ID=TCONS_00054688|Name=TCONS_00054688|organism=Clytia hemisphaerica|type=transcript|length=333bp
TGCAACAACTTCTAAAAGCGCTTATTTTACAGGTGGAGCCATAATGAATT
TAGTGTCAAGAGCAAACAATCTTGAGGAAAGACAAGAATTTGGCGTCAGA
GACTTTATTGTCCTGTTGTAAGCTTACTTACCTAGAGAAATTACACAATA
AGTTATCAATTTATagattttcttattcttttcaaaaaaattgtaactTA
CACTGTGTCTTTCTCTGAAAATTCATATGCATGATGGGGTACTTTTTcaa
cttgaattttgaaaggaaCAGGGTTATTTGATCCTAACATATCAATTTCT
GGATctagataaaaataaaacatttaatGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_243:407064..407396

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054688 ID=TCONS_00054688|Name=TCONS_00054688|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_243:407064..407396 (Clytia hemisphaerica)
CTTGCattaaatgttttatttttatctagATCCAGAAATTGATATGTTAG
GATCAAATAACCCTGttcctttcaaaattcaagttgAAAAAGTACCCCAT
CATGCATATGAATTTTCAGAGAAAGACACAGTGTAagttacaattttttt
gaaaagaataagaaaatctATAAATTGATAACTTATTGTGTAATTTCTCT
AGGTAAGTAAGCTTACAACAGGACAATAAAGTCTCTGACGCCAAATTCTT
GTCTTTCCTCAAGATTGTTTGCTCTTGACACTAAATTCATTATGGCTCCA
CCTGTAAAATAAGCGCTTTTAGAAGTTGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034449XLOC_034449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054688-exon-scaffold_243-1491911889:407064..407396TCONS_00054688-exon-scaffold_243-1491911889:407064..407396Clytia hemisphaericaexon
TCONS_00054688-exon-scaffold_243-1510915933:407064..407396TCONS_00054688-exon-scaffold_243-1510915933:407064..407396Clytia hemisphaericaexon
TCONS_00054688-exon-scaffold_243-1575043694:407064..407396TCONS_00054688-exon-scaffold_243-1575043694:407064..407396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:407064..407396 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.29431	1.67399	1.94366	1.90156	0	0	0	0	3.13424	2.68772	1.15945	0.571633	3.61531	3.95214	2.76182	7.49681	4.29556	5.06323	2.73722	3.50082	2.4896	2.42868	10.8254	10.7366	0	0	1.17692	2.0934	8.25641	15.2063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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