TCONS_00054786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054786
Unique NameTCONS_00054786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054786 ID=TCONS_00054786|Name=TCONS_00054786|organism=Clytia hemisphaerica|type=transcript|length=1353bp
ccctgTAGGAAAAATACACTGCAATTTCAGCCTCACTGAAAAAATAGATT
GTTCAGATCTAAACTTTAAGATAATTTGCTCGTTTGCCCAACtgctttta
aaatgtttttgaatgttaACTGAGACAGAGAGTGGTCAAACAGAACAACG
TCACAATAAAGTTAGGTAAAGATGAGGCCAAAACTATTATCGTTTCGATG
AAGTTCTCTTTCGCGAGAGACTTTTATATTCCAGCATCATCCATTGAAAT
TTAGAGATTACTATGTAATTTTAGTGTACTGCAAAGTGACCATATGGTGA
TGATATTCCAAACTTCGTAAATAAAATACTCCATTTGAAATTTCTGTGTT
ATCCGATGTTTTTGAAGCGGTTTATTTCAGTTCAATAAGCGACAATTTCT
TCAGGGCTATCAATCAGACTATCTCTATTATTTCTTTGCACATTTCTTGG
CAAATATTTTAATCTGTATTGTCTGTTGTGCGCAAGTACTGTGTCCACGT
GTTGGACCAAGACTCGATATTTCTTACGCCATCTAGCAGATATACAGATC
AGTGAAATGATATGGACATGCAAGCCATACATTGGAGCCAAGTATCTTTC
GTGACTTTGTCCTGGgtgaaagaaattcaaaaacaaaagcgTGACCAAAA
ACATCGAAAAGAAGTAATAAACTCCAAAGATACCTTGTGGGAATCGATAG
ATTTTCTGATGAGTCGATTTTAATCGCCTTCTTCGTTCGAATTCGTCATT
GAATCGGAGGTATTCTTCTCGTATGTTTTCGATCGTCTGCAGTATACGGT
GATGCCGACGCATAATGCAACAATAGAATATCATGATGAGAATGAACGAG
ANGATAATCATGGCAGACACAAACATGGTTAAGGCTCGTTTATTCTTTTT
GGAGTACCATACCAGACTGGTGACGATGGCAAATCCCCATGACATAAGGA
TGAGACCTAAAGAACGTTTGTTTTGGTTCTTAGATGCTGACGTAATTGTG
ACGTAATCAGCTTGAGCCAAAAGAAAATTATGAGAAATGGATAGCAGTAC
TGAGCAGAATAGGATAGCGTAAGCCAAGTTGGAGCAGTAATGCATATGTA
GAATAAATCCCATTGCACAGTGTAAATTAACGAAAGAAAAACTgatcaaa
atttctttatagACAATCTTCATTCTCTTGATATTCCAGGTTGCCAAGAT
TGAGATGAAACTAATAGCGGCTCCAGAGATGTAAATGGCATAACAAGTTG
TCTTCCAAGCTTCTGTTTTACCATAGTCGCACAATGTCTGTTCTGCAGTT
GATTGAAATGTTTTGTCAATGGTTTTGTTATCTAGAACTGCTGCCGTACT
GTT
Run BLAST on NCBI

transcript from alignment at scaffold_245:701318..702724+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054786 ID=TCONS_00054786|Name=TCONS_00054786|organism=Clytia hemisphaerica|type=transcript|length=1407bp|location=Sequence derived from alignment at scaffold_245:701318..702724+ (Clytia hemisphaerica)
ccctgTAGGAAAAATACACTGCAATTTCAGCCTCACTGAAAAAATAGATT
GTTCAGATCTAAACTTTAAGATAATTTGCTCGTTTGCCCAACtgctttta
aaatgtttttgaatgttaACTGAGACAGAGAGTGGTCAAACAGAACAACG
TCACAATAAAGTTAGGTAAAGATGAGGCCAAAACTATTATCGTTTCGATG
AAGTTCTCTTTCGCGAGAGACTTTTATATTCCAGCATCATCCATTGAAAT
TTAGAGATTACTATGTAATTTTAGTGTACTGCAAAGTGACCATATGGTGA
TGATATTCCAAACTTCGTAAATAAAATACTCCATTTGAAATTTCTGTGTT
ATCCGATGTTTTTGAAGCGGTTTATTTCAGTTCAATAAGCGACAATTTCT
TCAGGGCTATCAATCAGACTATCTCTATTATTTCTTTGCACATTTCTTGG
CAAATATTTTAATCTGTATTGTCTGTTGTGCGCAAGTACTGTGTCCACGT
GTTGGACCAAGACTCGATATTTCTTACGCCATCTAGCAGATATACAGATC
AGTGAAATGATATGGACATGCAAGCCATACATTGGAGCCAAGTATCTTTC
GTGACTTTGTCCTGGgtgaaagaaattcaaaaacaaaagcgTGACCAAAA
ACATCGAAAAGAAGTAATAAACTCCAAAGATACCTTGTGGGAATCGATAG
ATTTTCTGATGAGTCGATTTTAATCGCCTTCTTCGTTCGAATTCGTCATT
GAATCGGAGGTATTCTTCTCGTATGTTTTCGATCGTCTGCAGTATACGGT
GATGCCGACGCATAATGCAACAATAGAATATCATGATGAGAATGAACGAG
ANGTGATGCCGACGCATAATGCAACAGTAGAATATCATGATGAGGATGAA
CGAGAGGATAATCATGGCAGACACAAACATGGTTAAGGCTCGTTTATTCT
TTTTGGAGTACCATACCAGACTGGTGACGATGGCAAATCCCCATGACATA
AGGATGAGACCTAAAGAACGTTTGTTTTGGTTCTTAGATGCTGACGTAAT
TGTGACGTAATCAGCTTGAGCCAAAAGAAAATTATGAGAAATGGATAGCA
GTACTGAGCAGAATAGGATAGCGTAAGCCAAGTTGGAGCAGTAATGCATA
TGTAGAATAAATCCCATTGCACAGTGTAAATTAACGAAAGAAAAACTgat
caaaatttctttatagACAATCTTCATTCTCTTGATATTCCAGGTTGCCA
AGATTGAGATGAAACTAATAGCGGCTCCAGAGATGTAAATGGCATAACAA
GTTGTCTTCCAAGCTTCTGTTTTACCATAGTCGCACAATGTCTGTTCTGC
AGTTGATTGAAATGTTTTGTCAATGGTTTTGTTATCTAGAACTGCTGCCG
TACTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034509XLOC_034509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054786-exon-scaffold_245-1491911889:701318..702169TCONS_00054786-exon-scaffold_245-1491911889:701318..702169Clytia hemisphaericaexon
TCONS_00054786-exon-scaffold_245-1510915933:701318..702169TCONS_00054786-exon-scaffold_245-1510915933:701318..702169Clytia hemisphaericaexon
TCONS_00054786-exon-scaffold_245-1575043694:701318..702169TCONS_00054786-exon-scaffold_245-1575043694:701318..702169Clytia hemisphaericaexon
TCONS_00054786-exon-scaffold_245-1491911889:702224..702724TCONS_00054786-exon-scaffold_245-1491911889:702224..702724Clytia hemisphaericaexon
TCONS_00054786-exon-scaffold_245-1510915933:702224..702724TCONS_00054786-exon-scaffold_245-1510915933:702224..702724Clytia hemisphaericaexon
TCONS_00054786-exon-scaffold_245-1575043694:702224..702724TCONS_00054786-exon-scaffold_245-1575043694:702224..702724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:701318..702724 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.031012	0	0.0351134	0	0	0	0	0.0373266	0	0	0.125677	0.0413077	0	0	0	0.0377957	0.419051	0.715856	0.0329665	0	1.61915	1.49177	0.604482	1.35774	1.06548	1.54524	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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