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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054791 ID=TCONS_00054791|Name=TCONS_00054791|organism=Clytia hemisphaerica|type=transcript|length=931bp
AGGCtttacaaaataagattttaaagtATAACAAATTAGCTACGATACAA
AACTACTACAAAGAAATCACGAGCATCTCTAGTTATTTACAcagtttttg
tcaataattAACTCAAATGGGGGGAATGCCACGGATCCCCTTATTCTATT
ATTATATTCTATTAAAACATGATTTTCAAAGCTGGTAGCAAAAAGATATA
GCCGATAAAGGTAAATCTCCTATACATAGGATTTAAAGCCACTTATTCCC
AAGGAAGTTGCGCGGTCAATATGATTTttacaaacgccggattgaaagta
aaatttactgCATGGTTACGAAAAAGGTAGGAtgcgaaaacaaaagaaac
ttgATTCaactagattcaatccgtcgtccgAGTCACGGTGTAAATTTCAA
GGCATCACTTTCTCTTGTGTGGGAAGGGTTGAAGATTTGGCTCTAGCATT
CGGCTGAATTTCATTGACCAATAGCCATTTTTGGATTAAAGCTGTcattt
ataaaaatttgaaattagaaattttccttCCCTCTTTTGCTATCTTAATG
ATTCTAGCTATCACAATTAATAGAGAAACAGTAAAAGTATGGAAGGGGCA
AGAAGCTGATAGATAGCCGAAAGACCAACAGCTGATGATGGTTTAGGTTT
TATTGACGTGTCTTTGTAGACTAATGTCAAGTTATCATTCTCCTGCACTT
GGTAACAAGATATTCCGACTGGAGATTGCTTTCCATTGATGTCAAACATC
CAGTATAGATTTTCAGATTGGTTGTTTTTCACGTCACAAACTTCAGTAAC
AAAAGCTCCAAAATCTCCCGTGGTGTATTCGAAGTTGTAACATGGTGTTG
AATTTGTGTTACCAAGTTTGAATGCATTGATAGCGTAATACCAATCATCA
AATGTAAGGTGTAATGGAGCTGGATCTGTTT Run BLAST on NCBI transcript from alignment at scaffold_245:766234..767899+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054791 ID=TCONS_00054791|Name=TCONS_00054791|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at scaffold_245:766234..767899+ (Clytia hemisphaerica)
AGGCtttacaaaataagattttaaagtATAACAAATTAGCTACGATACAA
AACTACTACAAAGAAATCACGAGCATCTCTAGTTATTTACAcagtttttg
tcaataattAACTCAAATGGGGGGAATGCCACGGATCCCCTTATTCTATT
ATTATATTCTATTAAAACATGATTTTCAAAGCTGGTAGCAAAAAGATATA
GCCGATAAAGGTAAATCTCCTATACATAGGATTTAAAGCCACTTATTCCC
AAGGAAGTTGCGCGGTCAATATGATTTttacaaacgccggattgaaagta
aaatttactgCATGGTTACGAAAAAGGTAGGAtgcgaaaacaaaagaaac
ttgATTCaactagattcaatccgtcgtccgAGTCACGGTGTAAATTTCAA
GGCATCACTTTCTCTTGTGTGGGAAGGGTTGAAGATTTGGCTCTAGCATT
CGGCTGAATTTCATTGACCAATAGCCATTTTTGGATTAAAGCTGTcattt
ataaaaatttgaaattagaaattttccttCCCTCTTTTGCTATCTTAATG
ATTCTAGCTATCACAATTAATAGAGAAACAGTAAAAGTATGGAAGGGGCA
AGAAGCTGATAGATAGCCGAAAGACCAACAGCTGATGATGGTTTAGGTTT
TATTGACGTGTCTTTGTAGACTAATGTCAAGTTATCATTCTCCTGCACTT
GGTAACAAGATATTCCGACTGGAGATTGCTTTCCATTGATGTCAAACATC
CAGTATAGATTTTCAGATTGGTTGTTTTTCACGTCACAAACTTCAGTAAC
AAAAGCTCCAAAATCTCCCGTGGTGTATTCGAAGTTGTAACATGGTGTTG
TATTTGTGTTTCCAAGTTTGAATGCATTGATAGCGTAATACCAATCATCA
AATGTGACATTTAATGGAGCTGGATCTGGTTTGTCGATTGCTTCAAACTG
CACTCGAAGTGTTGCTGGGATTTTCTAGAAATCGGTGAAAACTTTTAGCT
TTAGGAATTTATTGGAAGCATTGCGAAAATTAATattcaaaatacttttt
atCAATAGGCATCATAAATGCCAAAATAATATCCAGAATAGAATCAATAA
ATCATGGTTAATATTCTTCCTCCAAAGTTTCTACTGTCTGGCAGACTTTT
GGTTTGTAATTCTCATTCATTATCAGTATCTCAGTCATTGAGGCAAATTG
AATGGCATTCCTTgttacaaaaataaactttgttttaaaaatagataacC
GAAGAAGGAAGATGACCAATCTATTTTGTTAATTTGAACCATGTTCTTAA
AAGTTAGGCGAAGCACTTTCACTATGTAGACTCGGACAAGTTTTAAGAAA
GTAATACAACTTACTTTCGAAGGTGGTTGTGGCTTATGTTGTACATGTTT
ATAAACCAATGTCAAATTATCATTGCCTTgaactttgagacaagaaactC
CAACTGGTGCTTCTATCCCATTCACCAAAAACATCCAATTCAAATTGGCT
GTGAAGTTGTTTTTCACGCCACAAACTTCAGTGATGAAAGCTCCAAAATC
GCTTGTTGTGTATTCGAAGTTGTAACATGGTGTTGAATTTGTGTTACCAA
GTTTGAATGCATTGATAGCGTAATACCAATCATCAAATGTAAGGTGTAAT
GGAGCTGGATCTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054791-exon-scaffold_245-1491911889:766234..767074 | TCONS_00054791-exon-scaffold_245-1491911889:766234..767074 | Clytia hemisphaerica | exon |
| TCONS_00054791-exon-scaffold_245-1510915933:766234..767074 | TCONS_00054791-exon-scaffold_245-1510915933:766234..767074 | Clytia hemisphaerica | exon |
| TCONS_00054791-exon-scaffold_245-1575043694:766234..767074 | TCONS_00054791-exon-scaffold_245-1575043694:766234..767074 | Clytia hemisphaerica | exon |
| TCONS_00054791-exon-scaffold_245-1491911889:767810..767899 | TCONS_00054791-exon-scaffold_245-1491911889:767810..767899 | Clytia hemisphaerica | exon |
| TCONS_00054791-exon-scaffold_245-1510915933:767810..767899 | TCONS_00054791-exon-scaffold_245-1510915933:767810..767899 | Clytia hemisphaerica | exon |
| TCONS_00054791-exon-scaffold_245-1575043694:767810..767899 | TCONS_00054791-exon-scaffold_245-1575043694:767810..767899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:766234..767899 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027954 | DUF4430 |
Blast
The following BLAST results are available for this feature:
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