TCONS_00054913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054913
Unique NameTCONS_00054913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054913 ID=TCONS_00054913|Name=TCONS_00054913|organism=Clytia hemisphaerica|type=transcript|length=1332bp
ACAGCAGAAGCCATGGATGGACTCTGTCAACTCACCAACAGAACACAAGT
GGAAATCCCAGCACCAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTG
ATTACAACCAAAACGCACAACAACCTGTCACAAAGTCCTACATCCGCAAC
AATATGTCTGATGCCATGAAAGAAATCTCCAAAGATATTAACTTCAGAGC
AAAACAaGATCGTCAGCAGCGACCGGAATTCTTAGCCAAACAACATCAAC
TGAAATCGAGTGCTgccaaaaaacaacaacaaaaagatcACGAAGAAAAC
AACGAACTCTTCGCAAAACTAAAATCACGATCGCAAGCTATCGATAATGA
CGAGagacaaaaagaagaagaagctcAACGTCCAGAGTTTATGAAAGTCA
AATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGATACAAACT
CATCACTTGAATTACCCAGGATTCTCTGTTTGGCGTTGGACTGAAGATGA
AACTGGCCTCAGATTGGCTGAATTTTCCTCCCCTTGTTTTCTGTGAACGG
AAATATGTCGGACAAGATACATGTTGGAACTTTGAAATTTCACAcatttc
aaacattttgttttaaagATGGTTTTATTTGCTCTCGCAATGGACAGAAT
CTTGGACAGAATCTTCTGTTcgaatcttttgttttttagctTTATGTTGT
GTTAAGCTAGGATTAATCACAGCTTTGAGCGCCAACGAAGCTGAAACTCT
GTCGGCTAAATAATGCGAGGAATCGATGAAAAACCAGCGGGGCACAGCTG
CAGGGCACTGACCCATAACTGGGTGGCTCTGTCTAATTTTGATTCTCAGA
AGCGATCGACCATTTCAAGATAGTACTTGGTACTGGATTTTGGTAAATAC
TAAAGTAAATACCAGTTACTAAAAAGGGGGCGGTGGTAGTTAAAACAATT
CCTTCTGAAAGTACCCTATGGATTAGTACCCTGCGGCTGTATCCTTCCCT
GtgaaaaaacatgttttttttattctggttttttttcgaagatttaCTGT
TCCATCATTGCTGAATAGTTTTAGTCAAGCACAGTCTAAATATTCATATG
TCTATGGTCAAGTGTGATTCTAACGAGTTTTAAAGCACTGTTAGTCTTCG
CAAACATACTTCCTATGTAAACCTGAGATGACAGAAGATATATTTCCCTA
CGAGCGTTCTCCATTTTTGTAGATTCTTCAAAATTGTATCGATAAGATtt
ttgtatatatattttttctaataaagaattaGTTTTAGTACAAAGTAAAT
CATTATGTAGTTTGAAAATATCttactttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_246:127084..130870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054913 ID=TCONS_00054913|Name=TCONS_00054913|organism=Clytia hemisphaerica|type=transcript|length=3787bp|location=Sequence derived from alignment at scaffold_246:127084..130870- (Clytia hemisphaerica)
ACAGCAGAAGCCATGGATGGACTCTGTCAACTCACCAACAGAACACAAGG
TAACACTTTCACCAAAAATACAAGCAGTAAACATTAAAGTGTTTGAATAA
TGTGAACGCCTTGAACCGGATTTAAGAGGTGTCCGCTTTTTGATGAAGCC
TTCAACATTTGTTCCGCGTATTGAGTGTCTGCTATAGAGAGAATGCAGGA
ATCTTGATGTAACTGACCAATTGAATTTATGTTGCGATGAACTCTGGTAA
CCTTTTGAGTTTGTTAAAGATTATTTTTAGACTTTTTTTGTATCAACATC
TAGAATATGAAACTTATTTGGGAGAACGTGGTTGACAAGAATTTTTTAAT
CCTTCAAACTGATAAGATTATCATAGTCATAATAAAATGGGGGCCATTTT
ATTCTTGATGACGTCACAGATCTGATGAATGTATCAACCAAAACGTCGAC
AAGCGATAATGTAATAAAAATATTTTCAGAATGATAAAATAGATTTTTCT
TACATAGCCTGACAGATCATTTATTGTAATTGATTTTTAAACCTTTTTCT
CATGAAATTGCTGACAAATACTTTACAAAACCTCAGATAAAGTTATACAA
AGTCGTTTCGAGCTTTTAAAGAAAGAGTTGTAGTTTTGGACGTAACAACA
ATGGCTCAAAAACAGCATCGAGGTACTAAATCTGTTTTGTTTGTTTAGTA
TCTTTCTTATAATGAAAATAGTTCCATATCCATGAGTAAAGGTTTTAGTT
CAGCCAATTTATAATCAAGGTCAAAGAAAATCTCTTCAGACAGCTTGAGA
GGAATTCCTTGGCATATTTTACGTAATTTTATTCATCATTTGATCCGTTT
TTTATTGAGGGATTTAGAATAAGTGAATGATGGGGAACACATTTTCCAGT
TGCTTTGTTTCCCATTCAGCCTCTTTTTCTTTCATATTTTATTTACCAGT
TTATCAGTTTGAAACTTCTTCTTCAAAATAAGGAAAAAGAAAGAAAATTT
AGGAAAAGGAAATCTTTCATACAAAATTCCTTAATTATTTAAAGGAGAGT
GTGTTAGGATTTCCAAGGGATATACTTTATTATAGTCTCACCTCTCACTA
TATGAGATTCACTTGATGAAAGTTTTGAATGGAAATGGATGAAAATCTTA
TAACACTTTCTTTTTCGTCTTGATGTGTTTAAATCTTATTCGTTCTGTAA
ATCTTCTTCTTTGAACATGTGAATAATTAGTAGTTTCAAGTATTGTTTGT
TGTCAAGAGATTACCGGGTGATTAATCAGTAATTGGCAATTTCCTTCTTC
ATCTAATTACAAGGCAGTAGAAAGATAATTAGAAGCATCCATGTATGTTT
AAAATTCTTCGTAGCTTTACTACTCGTTTGAAGTGTTTACATGTTTGATC
AGATATTTACGAGAAAAATCAATAAGATAGAAAAGTCGAGAAGAATTTGA
TGGGAAATGATAGATCTAAATCTAACCATATTTAGTTTAGCTAATAGAAG
AGGATTTTTATGTTGAAATTAATTTTCGATGCGTTTGTTCCTATTTCGTA
GTTTTTTAAAAGTTGCCACCGTAGGTTACATGGACATGGCAAGGCTTCAT
GATGTATACTGTCATAAATTTGCCTCCAAGTTCGTCACTAAATGACGTTA
ATGATGATATAAAGGACAGCTCTTTACTTTGTGACTGCTTTTTAAAATAA
TTCTTGATAAAAAGCTGGTATTTTGCTATGAATGACTTATCAGAATCAAA
GGCAGTTTGAAATCCAGGAGTCTAATGTCATGTTTTTGGTTGTTCTGTTG
TTGTTTTTGTCATTGTATACCTGAAATAAATTTCTCATGAGAGTCATGTT
TCTCAATGCTTTCTTTATATATCATGATTGTGAAAGATCCTTAAGTTGAA
AATTTATCAAAGTTTATTTCCAATTCATAGAGAGTATAGATGCAGTATTT
AGTTTTGTTGAGATGGTTATATTTTGTTTTGAGTGTAGATTAAATGTGCA
ACTCTGAAGCTCGATTTGATTACCTCTGCCTTGAGCCTGTATATTGTTCT
TCATAGTTCGCTATATTCTCTTATTTCAGTGGAAATCCCAGCACCAGACT
ACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAACGCACAA
CAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGCCATGAA
AGAAATCTCCAAAGATATTAACTTCAGAGCAAAACAGTAAGTGTCGTTTA
CTTATGAAATTTAAAGGAAGAAAAATATGGACAAATTTAGTAAACTCTAG
ACCCTAAATGTGTGGTTTTTGTATACTTAGAGAAACTTACAGATGAAAAG
TCTGGATGACTGCAATTTGGATTTTAGACGCTTATACCTTTGATCTTAGG
GTGGAGAATCGTTCCAATAAAATAGTGACAATAGCATATTTCTTACCATG
AAATCTTCAAATAAACTCTTCCTTGTTTTGTTATTTTTCAGAGATCGTCA
GCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGCTG
CCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCGCA
AAACTAAAATCACGATCGCAAGCTATCGATAATGTATGTCTTTGATAAAT
TTTCTCATCTATTTCGTAGTAAGCCTCATAAGCTATCGTATACACGTGTT
AACTTATAAATCCCTTAAGAGACTAAAGGCACCTCATTGAAAGTGTTAAT
AATCTATTTCGCATTTGAGTACCTCAACAACATTTCTCTATTCTCATTTT
CAGGACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAA
AGTCAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGATAC
AAACTCATCACTTGAATTACCCAGGATTCTCTGTTTGGCGTTGGACTGAA
GATGAAACTGGCCTCAGATTGGCTGAATTTTCCTCCCCTTGTTTTCTGTG
AACGGAAATATGTCGGACAAGATACATGTTGGAACTTTGAAATTTCACAC
ATTTCAAACATTTTGTTTTAAAGATGGTTTTATTTGCTCTCGCAATGGAC
AGAATCTTGGACAGAATCTTCTGTTCGAATCTTTTGTTTTTTAGCTTTAT
GTTGTGTTAAGCTAGGATTAATCACAGCTTTGAGCGCCAACGAAGCTGAA
ACTCTGTCGGCTAAATAATGCGAGGAATCGATGAAAAACCAGCGGGGCAC
AGCTGCAGGGCACTGACCCATAACTGGGTGGCTCTGTCTAATTTTGATTC
TCAGAAGCGATCGACCATTTCAAGATAGTACTTGGTACTGGATTTTGGTA
AATACTAAAGTAAATACCAGTTACTAAAAAGGGGGCGGTGGTAGTTAAAA
CAATTCCTTCTGAAAGTACCCTATGGATTAGTACCCTGCGGCTGTATCCT
TCCCTGTGAAAAAACATGTTTTTTTTATTCTGGTTTTTTTTCGAAGATTT
ACTGTTCCATCATTGCTGAATAGTTTTAGTCAAGCACAGTCTAAATATTC
ATATGTCTATGGTCAAGTGTGATTCTAACGAGTTTTAAAGCACTGTTAGT
CTTCGCAAACATACTTCCTATGTAAACCTGAGATGACAGAAGATATATTT
CCCTACGAGCGTTCTCCATTTTTGTAGATTCTTCAAAATTGTATCGATAA
GATTTTTGTATATATATTTTTTCTAATAAAGAATTAGTTTTAGTACAAAG
TAAATCATTATGTAGTTTGAAAATATCTTACTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034602XLOC_034602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054913-exon-scaffold_246-1575043694:130822..130870TCONS_00054913-exon-scaffold_246-1575043694:130822..130870Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1575043694:128635..128791TCONS_00054913-exon-scaffold_246-1575043694:128635..128791Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1575043694:128238..128379TCONS_00054913-exon-scaffold_246-1575043694:128238..128379Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1575043694:127084..128067TCONS_00054913-exon-scaffold_246-1575043694:127084..128067Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1510915933:130822..130870TCONS_00054913-exon-scaffold_246-1510915933:130822..130870Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1510915933:128635..128791TCONS_00054913-exon-scaffold_246-1510915933:128635..128791Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1510915933:128238..128379TCONS_00054913-exon-scaffold_246-1510915933:128238..128379Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1510915933:127084..128067TCONS_00054913-exon-scaffold_246-1510915933:127084..128067Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1491911889:130822..130870TCONS_00054913-exon-scaffold_246-1491911889:130822..130870Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1491911889:128635..128791TCONS_00054913-exon-scaffold_246-1491911889:128635..128791Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1491911889:128238..128379TCONS_00054913-exon-scaffold_246-1491911889:128238..128379Clytia hemisphaericaexon
TCONS_00054913-exon-scaffold_246-1491911889:127084..128067TCONS_00054913-exon-scaffold_246-1491911889:127084..128067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:127084..130870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.56822e-09	0	4.2878e-07	0	8.16588e-07	1.32018e-06	4.35546	2.05904	11.8338	5.08537	0.324025	8.04987	0	0	8.46451	11.9727	0.467787	7.42817	3.01589e-08	4.74614	12.3944	17.316	2.61409	10.6472	0	6.65962e-07	33.821	28.5037	8.26467	12.0657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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