TCONS_00054914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054914
Unique NameTCONS_00054914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054914 ID=TCONS_00054914|Name=TCONS_00054914|organism=Clytia hemisphaerica|type=transcript|length=1458bp
TACATTCATGATCATTCATTACTTATTCCTTTGTTTTGATACAAGTTCTA
ATACCATATTGTTCTTTCAACTCTTCGTTCTCCTGTTTCAGAGTAAAGTA
GTAAAACATAAAACAAGAAACTGCATACAGCAGAAGCCATGGATGGACTC
TGTCAACTCACCAACAGAACACAAGTGGAAATCCCAGCACCAGACTACGA
AGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAACGCACAACAAC
CTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGCCATGAAAGAA
ATCTCCAAAGATATTAACTTCAGAGCAAAACAaGATCGTCAGCAGCGACC
GGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGCTgccaaaaaac
aacaacaaaaagatcACGAAGAAAACAACGAACTCTTCGCAAAACTAAAA
TCACGATCGCAAGCTATCGATAATGACGAGagacaaaaagaagaagaagc
tcAACGTCCAGAGTTTATGAAAGTCAAATTAAAAAGTGGTCCAAATACTC
CCATAGCGTCTTCATAGATACAAACTCATCACTTGAATTACCCAGGATTC
TCTGTTTGGCGTTGGACTGAAGATGAAACTGGCCTCAGATTGGCTGAATT
TTCCTCCCCTTGTTTTCTGTGAACGGAAATATGTCGGACAAGATACATGT
TGGAACTTTGAAATTTCACAcatttcaaacattttgttttaaagATGGTT
TTATTTGCTCTCGCAATGGACAGAATCTTGGACAGAATCTTCTGTTcgaa
tcttttgttttttagctTTATGTTGTGTTAAGCTAGGATTAATCACAGCT
TTGAGCGCCAACGAAGCTGAAACTCTGTCGGCTAAATAATGCGAGGAATC
GATGAAAAACCAGCGGGGCACAGCTGCAGGGCACTGACCCATAACTGGGT
GGCTCTGTCTAATTTTGATTCTCAGAAGCGATCGACCATTTCAAGATAGT
ACTTGGTACTGGATTTTGGTAAATACTAAAGTAAATACCAGTTACTAAAA
AGGGGGCGGTGGTAGTTAAAACAATTCCTTCTGAAAGTACCCTATGGATT
AGTACCCTGCGGCTGTATCCTTCCCTGtgaaaaaacatgttttttttatt
ctggttttttttcgaagatttaCTGTTCCATCATTGCTGAATAGTTTTAG
TCAAGCACAGTCTAAATATTCATATGTCTATGGTCAAGTGTGATTCTAAC
GAGTTTTAAAGCACTGTTAGTCTTCGCAAACATACTTCCTATGTAAACCT
GAGATGACAGAAGATATATTTCCCTACGAGCGTTCTCCATTTTTGTAGAT
TCTTCAAAATTGTATCGATAAGATttttgtatatatattttttctaataa
agaattaGTTTTAGTACAAAGTAAATCATTATGTAGTTTGAAAATATCtt
actttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_246:127084..131070-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054914 ID=TCONS_00054914|Name=TCONS_00054914|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at scaffold_246:127084..131070- (Clytia hemisphaerica)
TACATTCATGATCATTCATTACTTATTCCTTTGTTTTGATACAAGTTCTA
ATACCATATTGTTCTTTCAACTCTTCGTTCTCCTGTTTCAGAGTAAAGTA
GTAAAACATAAAACAAGAAACTGCATACAGCAGAAGCCATGGATGGACTC
TGTCAACTCACCAACAGAACACAAGGTAACGATTAATGATTCATTTTTTN
ACAGCAGAAGCCATGGATGGACTCTGTCAACTCACCAACAGAACACAAGG
TAACACTTTCACCAAAAATACAAGCAGTAAACATTAAAGTGTTTGAATAA
TGTGAACGCCTTGAACCGGATTTAAGAGGTGTCCGCTTTTTGATGAAGCC
TTCAACATTTGTTCCGCGTATTGAGTGTCTGCTATAGAGAGAATGCAGGA
ATCTTGATGTAACTGACCAATTGAATTTATGTTGCGATGAACTCTGGTAA
CCTTTTGAGTTTGTTAAAGATTATTTTTAGACTTTTTTTGTATCAACATC
TAGAATATGAAACTTATTTGGGAGAACGTGGTTGACAAGAATTTTTTAAT
CCTTCAAACTGATAAGATTATCATAGTCATAATAAAATGGGGGCCATTTT
ATTCTTGATGACGTCACAGATCTGATGAATGTATCAACCAAAACGTCGAC
AAGCGATAATGTAATAAAAATATTTTCAGAATGATAAAATAGATTTTTCT
TACATAGCCTGACAGATCATTTATTGTAATTGATTTTTAAACCTTTTTCT
CATGAAATTGCTGACAAATACTTTACAAAACCTCAGATAAAGTTATACAA
AGTCGTTTCGAGCTTTTAAAGAAAGAGTTGTAGTTTTGGACGTAACAACA
ATGGCTCAAAAACAGCATCGAGGTACTAAATCTGTTTTGTTTGTTTAGTA
TCTTTCTTATAATGAAAATAGTTCCATATCCATGAGTAAAGGTTTTAGTT
CAGCCAATTTATAATCAAGGTCAAAGAAAATCTCTTCAGACAGCTTGAGA
GGAATTCCTTGGCATATTTTACGTAATTTTATTCATCATTTGATCCGTTT
TTTATTGAGGGATTTAGAATAAGTGAATGATGGGGAACACATTTTCCAGT
TGCTTTGTTTCCCATTCAGCCTCTTTTTCTTTCATATTTTATTTACCAGT
TTATCAGTTTGAAACTTCTTCTTCAAAATAAGGAAAAAGAAAGAAAATTT
AGGAAAAGGAAATCTTTCATACAAAATTCCTTAATTATTTAAAGGAGAGT
GTGTTAGGATTTCCAAGGGATATACTTTATTATAGTCTCACCTCTCACTA
TATGAGATTCACTTGATGAAAGTTTTGAATGGAAATGGATGAAAATCTTA
TAACACTTTCTTTTTCGTCTTGATGTGTTTAAATCTTATTCGTTCTGTAA
ATCTTCTTCTTTGAACATGTGAATAATTAGTAGTTTCAAGTATTGTTTGT
TGTCAAGAGATTACCGGGTGATTAATCAGTAATTGGCAATTTCCTTCTTC
ATCTAATTACAAGGCAGTAGAAAGATAATTAGAAGCATCCATGTATGTTT
AAAATTCTTCGTAGCTTTACTACTCGTTTGAAGTGTTTACATGTTTGATC
AGATATTTACGAGAAAAATCAATAAGATAGAAAAGTCGAGAAGAATTTGA
TGGGAAATGATAGATCTAAATCTAACCATATTTAGTTTAGCTAATAGAAG
AGGATTTTTATGTTGAAATTAATTTTCGATGCGTTTGTTCCTATTTCGTA
GTTTTTTAAAAGTTGCCACCGTAGGTTACATGGACATGGCAAGGCTTCAT
GATGTATACTGTCATAAATTTGCCTCCAAGTTCGTCACTAAATGACGTTA
ATGATGATATAAAGGACAGCTCTTTACTTTGTGACTGCTTTTTAAAATAA
TTCTTGATAAAAAGCTGGTATTTTGCTATGAATGACTTATCAGAATCAAA
GGCAGTTTGAAATCCAGGAGTCTAATGTCATGTTTTTGGTTGTTCTGTTG
TTGTTTTTGTCATTGTATACCTGAAATAAATTTCTCATGAGAGTCATGTT
TCTCAATGCTTTCTTTATATATCATGATTGTGAAAGATCCTTAAGTTGAA
AATTTATCAAAGTTTATTTCCAATTCATAGAGAGTATAGATGCAGTATTT
AGTTTTGTTGAGATGGTTATATTTTGTTTTGAGTGTAGATTAAATGTGCA
ACTCTGAAGCTCGATTTGATTACCTCTGCCTTGAGCCTGTATATTGTTCT
TCATAGTTCGCTATATTCTCTTATTTCAGTGGAAATCCCAGCACCAGACT
ACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAACGCACAA
CAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGCCATGAA
AGAAATCTCCAAAGATATTAACTTCAGAGCAAAACAGTAAGTGTCGTTTA
CTTATGAAATTTAAAGGAAGAAAAATATGGACAAATTTAGTAAACTCTAG
ACCCTAAATGTGTGGTTTTTGTATACTTAGAGAAACTTACAGATGAAAAG
TCTGGATGACTGCAATTTGGATTTTAGACGCTTATACCTTTGATCTTAGG
GTGGAGAATCGTTCCAATAAAATAGTGACAATAGCATATTTCTTACCATG
AAATCTTCAAATAAACTCTTCCTTGTTTTGTTATTTTTCAGAGATCGTCA
GCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGCTG
CCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCGCA
AAACTAAAATCACGATCGCAAGCTATCGATAATGTATGTCTTTGATAAAT
TTTCTCATCTATTTCGTAGTAAGCCTCATAAGCTATCGTATACACGTGTT
AACTTATAAATCCCTTAAGAGACTAAAGGCACCTCATTGAAAGTGTTAAT
AATCTATTTCGCATTTGAGTACCTCAACAACATTTCTCTATTCTCATTTT
CAGGACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAA
AGTCAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGATAC
AAACTCATCACTTGAATTACCCAGGATTCTCTGTTTGGCGTTGGACTGAA
GATGAAACTGGCCTCAGATTGGCTGAATTTTCCTCCCCTTGTTTTCTGTG
AACGGAAATATGTCGGACAAGATACATGTTGGAACTTTGAAATTTCACAC
ATTTCAAACATTTTGTTTTAAAGATGGTTTTATTTGCTCTCGCAATGGAC
AGAATCTTGGACAGAATCTTCTGTTCGAATCTTTTGTTTTTTAGCTTTAT
GTTGTGTTAAGCTAGGATTAATCACAGCTTTGAGCGCCAACGAAGCTGAA
ACTCTGTCGGCTAAATAATGCGAGGAATCGATGAAAAACCAGCGGGGCAC
AGCTGCAGGGCACTGACCCATAACTGGGTGGCTCTGTCTAATTTTGATTC
TCAGAAGCGATCGACCATTTCAAGATAGTACTTGGTACTGGATTTTGGTA
AATACTAAAGTAAATACCAGTTACTAAAAAGGGGGCGGTGGTAGTTAAAA
CAATTCCTTCTGAAAGTACCCTATGGATTAGTACCCTGCGGCTGTATCCT
TCCCTGTGAAAAAACATGTTTTTTTTATTCTGGTTTTTTTTCGAAGATTT
ACTGTTCCATCATTGCTGAATAGTTTTAGTCAAGCACAGTCTAAATATTC
ATATGTCTATGGTCAAGTGTGATTCTAACGAGTTTTAAAGCACTGTTAGT
CTTCGCAAACATACTTCCTATGTAAACCTGAGATGACAGAAGATATATTT
CCCTACGAGCGTTCTCCATTTTTGTAGATTCTTCAAAATTGTATCGATAA
GATTTTTGTATATATATTTTTTCTAATAAAGAATTAGTTTTAGTACAAAG
TAAATCATTATGTAGTTTGAAAATATCTTACTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034602XLOC_034602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054914-exon-scaffold_246-1575043694:130896..131070TCONS_00054914-exon-scaffold_246-1575043694:130896..131070Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1575043694:128635..128791TCONS_00054914-exon-scaffold_246-1575043694:128635..128791Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1575043694:128238..128379TCONS_00054914-exon-scaffold_246-1575043694:128238..128379Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1575043694:127084..128067TCONS_00054914-exon-scaffold_246-1575043694:127084..128067Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1510915933:130896..131070TCONS_00054914-exon-scaffold_246-1510915933:130896..131070Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1510915933:128635..128791TCONS_00054914-exon-scaffold_246-1510915933:128635..128791Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1510915933:128238..128379TCONS_00054914-exon-scaffold_246-1510915933:128238..128379Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1510915933:127084..128067TCONS_00054914-exon-scaffold_246-1510915933:127084..128067Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1491911889:130896..131070TCONS_00054914-exon-scaffold_246-1491911889:130896..131070Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1491911889:128635..128791TCONS_00054914-exon-scaffold_246-1491911889:128635..128791Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1491911889:128238..128379TCONS_00054914-exon-scaffold_246-1491911889:128238..128379Clytia hemisphaericaexon
TCONS_00054914-exon-scaffold_246-1491911889:127084..128067TCONS_00054914-exon-scaffold_246-1491911889:127084..128067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:127084..131070 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3873	14.9103	29.159	31.1598	4.17531	1.29254	11.5861	15.0194	3.94505	3.51793	4.02356	8.64744	15.9399	19.2424	19.0974	19.4308	15.3841	10.8682	16.8196	28.3199	19.1083	14.1571	13.2104	11.3679	42.9503	37.9486	18.8768	7.75991	17.9529	17.0578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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